Wall clock time and date at job start Sun Mar 29 2020 23:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00228 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99783 * 359.97438 * 7 5 4 10 10 H 1.48489 * 109.47262 * 90.00178 * 9 7 5 11 11 H 1.48509 * 109.46916 * 210.00229 * 9 7 5 12 12 H 1.48493 * 109.47108 * 329.99715 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47230 * 179.97438 * 16 15 14 18 18 N 1.46490 * 109.47380 * 180.02562 * 17 16 15 19 19 C 1.34434 * 126.82611 * 124.99921 * 18 17 16 20 20 N 1.30831 * 108.07975 * 179.97438 * 19 18 17 21 21 C 1.33241 * 109.82984 * 0.02562 * 20 19 18 22 22 N 1.30720 * 108.94657 * 359.75283 * 21 20 19 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 27 27 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 28 28 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 31 31 H 1.00892 * 111.00581 * 56.04080 * 14 13 2 32 32 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 33 33 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 34 34 H 1.08993 * 109.47074 * 300.00164 * 16 15 14 35 35 H 1.09004 * 109.46404 * 60.00223 * 16 15 14 36 36 H 1.09003 * 109.46967 * 300.00534 * 17 16 15 37 37 H 1.09003 * 109.46940 * 60.00052 * 17 16 15 38 38 H 1.07996 * 125.96072 * 0.02562 * 19 18 17 39 39 H 1.08001 * 125.53047 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 1.6447 0.2773 4.7994 9 14 2.9634 -1.9883 3.9028 10 1 4.4168 -1.6850 3.8781 11 1 2.6160 -2.6420 5.1903 12 1 2.6287 -2.8994 2.7790 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 6 2.1973 -0.5003 -6.1614 18 7 1.7925 0.2827 -7.3315 19 6 2.5947 0.7572 -8.3002 20 7 1.8519 1.4018 -9.1631 21 6 0.5762 1.3611 -8.7805 22 7 0.4886 0.6825 -7.6667 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6053 -1.7198 1.2952 27 1 3.1263 -0.7995 1.2056 28 1 1.8926 -0.0452 5.6800 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 1.9882 0.9872 -2.3967 32 1 3.2128 -0.7038 -3.6399 33 1 1.6922 -1.6246 -3.7300 34 1 0.6157 0.2678 -4.9162 35 1 2.1361 1.1891 -4.8264 36 1 3.2843 -0.5768 -6.1341 37 1 1.7642 -1.4986 -6.2243 38 1 3.6654 0.6281 -8.3569 39 1 -0.2516 1.8123 -9.3073 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602542775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:03 Heat of formation + Delta-G solvation = 71.045055 kcal Electronic energy + Delta-G solvation = -17564.221560 eV Core-core repulsion = 14736.147657 eV Total energy + Delta-G solvation = -2828.073903 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.32563 -37.51299 -35.76741 -33.91630 -32.18309 -31.49852 -30.58614 -27.55652 -26.31145 -24.48626 -22.54838 -22.28397 -21.84549 -21.33935 -19.11032 -17.63634 -16.78477 -16.35075 -15.78594 -15.44087 -14.76381 -14.60583 -14.29797 -14.12040 -13.94969 -13.41485 -12.92913 -12.63982 -12.36658 -11.99829 -11.90773 -11.74892 -11.59706 -11.16013 -10.96597 -10.70265 -10.41397 -10.30847 -10.09911 -10.00393 -9.93863 -9.67983 -9.43832 -9.07602 -8.52855 -8.29853 -6.02999 -4.00092 1.33327 1.98437 2.67624 3.29458 3.37322 3.40623 3.92646 4.00590 4.26082 4.45405 4.54016 4.64694 4.78637 4.94451 5.02792 5.12156 5.30377 5.38099 5.53504 5.65732 5.77940 5.92684 5.94683 5.99236 6.12874 6.26580 6.38205 6.47218 6.56285 6.82488 7.01270 7.11257 7.18767 7.26878 7.43805 7.51278 7.77324 7.81531 8.56391 9.02749 9.59706 11.10461 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.058479 B = 0.002816 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.686776 B = 9941.699324 C =10204.269446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.686 5.686 15 C 0.062 3.938 16 C -0.129 4.129 17 C 0.130 3.870 18 N -0.376 5.376 19 C 0.251 3.749 20 N -0.551 5.551 21 C 0.194 3.806 22 N -0.313 5.313 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.016 0.984 27 H 0.008 0.992 28 H 0.262 0.738 29 H 0.024 0.976 30 H 0.067 0.933 31 H 0.339 0.661 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.218 0.782 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 -2.021 -24.677 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.317 5.317 15 C -0.069 4.069 16 C -0.167 4.167 17 C 0.007 3.993 18 N -0.167 5.167 19 C -0.046 4.046 20 N -0.278 5.278 21 C -0.109 4.109 22 N -0.141 5.141 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.234 0.766 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.036 -2.343 -24.353 24.550 hybrid contribution 1.788 -0.726 0.415 1.974 sum 3.824 -3.069 -23.938 24.435 Atomic orbital electron populations 1.21600 0.95197 1.00667 1.00745 1.21013 0.96440 0.99003 0.92859 0.92228 1.19616 0.95327 0.96266 0.93500 1.21130 1.35326 1.09549 0.89091 0.90820 1.25035 0.95738 0.96903 0.95964 1.69912 1.47165 1.39326 0.98015 0.86799 0.80544 0.84540 0.77499 1.20461 1.21452 1.19085 1.22189 0.97080 0.97800 0.89597 1.60457 1.64090 1.05853 1.01310 1.21828 0.97150 0.98327 0.89558 1.21827 1.03887 0.99275 0.91726 1.21863 1.00764 0.94540 0.82105 1.50621 1.05030 1.40806 1.20226 1.26083 0.99501 0.93429 0.85619 1.70535 1.03058 1.24368 1.29829 1.26039 0.95064 0.97420 0.92383 1.78094 0.98781 1.19590 1.17639 0.94206 0.92196 0.93691 0.96595 0.97420 0.92814 0.95756 0.91461 0.84304 0.95355 0.90825 0.89335 0.91468 0.88055 0.89024 0.76603 0.76735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.07 -1.43 2.48 -90.62 -0.22 -1.66 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 4 C -0.01 -0.22 3.52 -27.89 -0.10 -0.31 16 5 C -0.51 -14.44 8.96 -34.44 -0.31 -14.75 16 6 H 0.07 2.23 7.30 -52.48 -0.38 1.85 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 9 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.06 0.96 5.07 -3.82 -0.02 0.94 16 14 N -0.69 -8.83 5.96 -113.78 -0.68 -9.51 16 15 C 0.06 0.59 5.68 -3.82 -0.02 0.57 16 16 C -0.13 -1.08 5.69 -26.73 -0.15 -1.24 16 17 C 0.13 0.82 6.55 -4.05 -0.03 0.79 16 18 N -0.38 -3.27 3.69 -62.64 -0.23 -3.51 16 19 C 0.25 1.92 12.63 -90.65 -1.14 0.78 16 20 N -0.55 -5.57 11.19 -15.83 -0.18 -5.75 16 21 C 0.19 1.88 13.03 -91.81 -1.20 0.69 16 22 N -0.31 -3.46 12.57 29.29 0.37 -3.10 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 25 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 27 H 0.01 0.18 7.57 -51.92 -0.39 -0.22 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.34 4.19 8.73 -39.30 -0.34 3.85 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.34 8.09 -51.93 -0.42 -0.08 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.22 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.22 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -33.69 324.85 -9.17 -42.86 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.49 Total: -1.29 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -2.96 Total: -14.46 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.06 Total: -49.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.69 -9.17 -42.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602542775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.902 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds