Wall clock time and date at job start Sun Mar 29 2020 23:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30834 * 125.95986 * 2 1 4 4 C 1.33234 * 109.82747 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.52779 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47212 * 90.00492 * 5 4 3 7 7 N 1.46900 * 109.47059 * 180.02562 * 6 5 4 8 8 C 1.46897 * 110.99727 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.46940 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47448 * 304.99654 * 9 8 7 11 11 C 1.53001 * 109.47080 * 65.00472 * 9 8 7 12 12 C 1.53002 * 109.46893 * 184.99774 * 9 8 7 13 13 C 1.50706 * 109.47153 * 174.99718 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 N 1.30715 * 108.94868 * 0.26815 * 4 3 2 22 22 N 1.34428 * 125.96127 * 180.02562 * 2 1 3 23 23 H 0.96997 * 126.82084 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.46743 * 90.00579 * 1 2 3 25 25 H 1.09000 * 109.46933 * 209.99982 * 1 2 3 26 26 H 1.08999 * 109.47370 * 330.00622 * 1 2 3 27 27 H 1.09008 * 109.46884 * 330.00441 * 5 4 3 28 28 H 1.08999 * 109.47507 * 210.01225 * 5 4 3 29 29 H 1.08995 * 109.46999 * 60.00043 * 6 5 4 30 30 H 1.09003 * 109.46925 * 300.00280 * 6 5 4 31 31 H 1.00902 * 110.99874 * 303.95251 * 7 6 5 32 32 H 1.08997 * 109.47423 * 60.00043 * 8 7 6 33 33 H 1.09001 * 109.47481 * 299.99662 * 8 7 6 34 34 H 1.09000 * 109.46932 * 180.02562 * 11 9 8 35 35 H 1.09001 * 109.46866 * 299.99538 * 11 9 8 36 36 H 1.09000 * 109.47309 * 59.99633 * 11 9 8 37 37 H 1.09004 * 109.47178 * 55.00508 * 12 9 8 38 38 H 1.08993 * 109.47411 * 295.00191 * 12 9 8 39 39 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6236 -0.0013 6 6 5.1380 1.9401 1.4409 7 7 6.2898 2.8519 1.4402 8 6 6.7031 3.1791 2.8114 9 6 7.9027 4.1278 2.7698 10 1 8.6973 3.6829 2.1709 11 6 7.4786 5.4592 2.1464 12 6 8.4109 4.3699 4.1925 13 6 9.6650 5.2042 4.1428 14 1 10.0597 5.5295 3.1916 15 6 10.3084 5.5521 5.3114 16 7 9.8248 5.1604 6.4700 17 14 11.8625 6.5868 5.2498 18 1 12.3525 6.8267 6.6310 19 1 12.9046 5.8689 4.4725 20 1 11.5658 7.8871 4.5970 21 7 3.6194 -0.6168 -0.0067 22 7 2.2964 -1.0881 -0.0005 23 1 2.0093 -2.0146 -0.0006 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 4.4698 2.5471 -0.5151 28 1 5.5740 1.1510 -0.5156 29 1 5.4054 1.0168 1.9547 30 1 4.3012 2.4128 1.9552 31 1 7.0580 2.4636 0.9136 32 1 6.9816 2.2646 3.3349 33 1 5.8769 3.6602 3.3349 34 1 8.3334 6.1349 2.1163 35 1 7.1165 5.2867 1.1328 36 1 6.6840 5.9041 2.7453 37 1 8.6294 3.4137 4.6679 38 1 7.6477 4.8951 4.7665 39 1 9.0177 4.6234 6.5021 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602599785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:27 Heat of formation + Delta-G solvation = 28.721027 kcal Electronic energy + Delta-G solvation = -17627.220188 eV Core-core repulsion = 14797.310978 eV Total energy + Delta-G solvation = -2829.909210 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.20127 -38.66507 -36.53293 -34.86319 -33.67227 -33.39656 -30.97319 -28.83841 -28.33671 -26.71848 -24.84897 -23.52513 -22.37846 -21.49122 -20.84548 -18.91557 -18.83187 -17.05101 -16.71911 -16.16173 -15.98355 -15.61813 -15.41523 -15.26469 -14.63008 -14.26037 -13.88731 -13.73725 -13.69030 -13.45131 -13.20114 -12.89144 -12.80937 -12.76366 -12.51204 -12.25830 -11.94444 -11.84891 -11.56475 -11.32550 -11.13608 -11.11270 -10.59678 -10.51238 -10.48235 -9.45179 -8.64718 -6.33567 0.52161 1.53471 1.62464 1.68032 1.75101 1.81217 2.59114 2.86000 3.19601 3.32118 3.60185 3.92219 3.96917 4.10690 4.17382 4.27947 4.42391 4.48945 4.62309 4.68551 4.76256 4.80231 4.88978 4.93261 4.97454 5.05755 5.09609 5.21885 5.33291 5.36044 5.38929 5.49760 5.66174 5.91160 6.08929 6.17273 6.23279 6.42633 6.62808 7.04274 7.47718 8.75984 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.058731 B = 0.002834 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.632739 B = 9877.874791 C = 9948.887389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.286 3.714 3 N -0.573 5.573 4 C 0.224 3.776 5 C -0.017 4.017 6 C 0.078 3.922 7 N -0.678 5.678 8 C 0.077 3.923 9 C -0.068 4.068 10 H 0.057 0.943 11 C -0.113 4.113 12 C 0.014 3.986 13 C -0.604 4.604 14 H 0.054 0.946 15 C -0.045 4.045 16 N -0.943 5.943 17 Si 1.117 2.883 18 H -0.286 1.286 19 H -0.268 1.268 20 H -0.268 1.268 21 N -0.345 5.345 22 N -0.477 5.477 23 H 0.455 0.545 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.348 0.652 32 H 0.017 0.983 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.033 0.967 37 H -0.019 1.019 38 H -0.014 1.014 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.928 -12.520 -15.974 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 N -0.304 5.304 4 C -0.059 4.059 5 C -0.057 4.057 6 C -0.053 4.053 7 N -0.310 5.310 8 C -0.052 4.052 9 C -0.087 4.087 10 H 0.075 0.925 11 C -0.170 4.170 12 C -0.023 4.023 13 C -0.642 4.642 14 H 0.073 0.927 15 C -0.241 4.241 16 N -0.581 5.581 17 Si 0.938 3.062 18 H -0.211 1.211 19 H -0.193 1.193 20 H -0.193 1.193 21 N -0.175 5.175 22 N -0.197 5.197 23 H 0.304 0.696 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.167 0.833 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.000 1.000 38 H 0.004 0.996 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.607 -11.296 -15.131 25.818 hybrid contribution -1.084 -2.352 -0.131 2.593 sum -18.691 -13.647 -15.262 27.723 Atomic orbital electron populations 1.20659 0.80020 1.06513 1.06179 1.25315 0.98356 0.82034 0.93458 1.70393 1.01752 1.31288 1.26932 1.24363 0.93904 0.90238 0.97373 1.19825 0.91456 0.96887 0.97495 1.21688 0.93982 0.93880 0.95705 1.60391 1.10061 1.46747 1.13779 1.21856 0.97168 0.96902 0.89312 1.20903 0.95357 0.96225 0.96169 0.92500 1.21489 0.99532 0.95817 1.00209 1.19208 0.95179 0.94222 0.93699 1.22441 1.11293 1.35306 0.95111 0.92742 1.27446 1.05911 0.98710 0.92056 1.70918 1.23246 1.36638 1.27338 0.82944 0.71849 0.75316 0.76092 1.21126 1.19343 1.19344 1.77930 0.98789 1.12628 1.28188 1.47926 1.03312 1.11037 1.57411 0.69610 0.87046 0.86930 0.88295 0.87819 0.88466 0.95968 0.91714 0.83349 0.96493 0.92077 0.94329 0.90940 0.94776 1.00034 0.99590 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.29 4.68 8.24 138.23 1.14 5.82 16 3 N -0.57 -13.94 11.19 -179.73 -2.01 -15.95 16 4 C 0.22 5.68 7.39 138.63 1.03 6.71 16 5 C -0.02 -0.38 6.10 29.85 0.18 -0.20 16 6 C 0.08 2.06 5.67 86.30 0.49 2.55 16 7 N -0.68 -19.55 5.96 -513.89 -3.06 -22.61 16 8 C 0.08 2.75 5.07 86.31 0.44 3.19 16 9 C -0.07 -2.84 2.48 -10.79 -0.03 -2.87 16 10 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 11 C -0.11 -4.46 8.89 71.98 0.64 -3.82 16 12 C 0.01 0.78 3.76 29.85 0.11 0.89 16 13 C -0.60 -35.09 8.41 25.60 0.22 -34.88 16 14 H 0.05 3.06 7.06 -2.91 -0.02 3.04 16 15 C -0.04 -2.67 5.46 84.65 0.46 -2.21 16 16 N -0.94 -60.40 13.65 21.45 0.29 -60.10 16 17 Si 1.12 51.48 29.90 68.60 2.05 53.53 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 N -0.35 -8.46 12.80 -51.34 -0.66 -9.12 16 22 N -0.48 -7.70 7.45 -50.70 -0.38 -8.08 16 23 H 0.46 3.58 8.96 -213.10 -1.91 1.67 16 24 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 28 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.35 9.09 8.73 -89.69 -0.78 8.30 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.04 1.62 6.95 -2.39 -0.02 1.60 16 35 H 0.07 2.45 7.75 -2.39 -0.02 2.43 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H -0.02 -1.07 8.01 -2.39 -0.02 -1.09 16 38 H -0.01 -0.82 8.00 -2.39 -0.02 -0.84 16 39 H 0.25 16.46 7.22 -92.71 -0.67 15.79 16 Total: -1.00 -76.00 326.49 0.11 -75.88 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -1.55 Total: 10.89 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 5.42 Total: -24.44 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -5.81 Total: -115.86 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -76.00 0.11 -75.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602599785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.603 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds