Wall clock time and date at job start Sun Mar 29 2020 23:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47062 * 2 1 4 4 N 1.46904 * 109.47481 * 119.99917 * 2 1 3 5 5 C 1.46894 * 111.00128 * 274.99961 * 4 2 1 6 6 C 1.52998 * 109.47326 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.46992 * 305.00689 * 6 5 4 8 8 C 1.53008 * 109.46634 * 65.00414 * 6 5 4 9 9 C 1.52999 * 109.47433 * 185.00014 * 6 5 4 10 10 C 1.50699 * 109.47266 * 175.00364 * 9 6 5 11 11 H 1.07997 * 119.99746 * 0.02562 * 10 9 6 12 12 C 1.37875 * 120.00130 * 180.02562 * 10 9 6 13 13 N 1.31514 * 120.00061 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00019 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46899 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.46964 * 119.99718 * 14 12 10 17 17 H 1.48504 * 109.46764 * 239.99949 * 14 12 10 18 18 C 1.50701 * 109.47090 * 240.00104 * 2 1 3 19 19 N 1.33241 * 125.52704 * 285.02391 * 18 2 1 20 20 C 1.30834 * 109.82716 * 179.97438 * 19 18 2 21 21 N 1.34428 * 108.08033 * 0.02562 * 20 19 18 22 22 C 1.46495 * 126.82196 * 180.02562 * 21 20 19 23 23 N 1.30718 * 125.52476 * 105.02689 * 18 2 1 24 24 H 1.09007 * 109.46846 * 300.00111 * 1 2 3 25 25 H 1.08998 * 109.47172 * 59.99423 * 1 2 3 26 26 H 1.08998 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.00898 * 110.99415 * 38.95377 * 4 2 1 28 28 H 1.08995 * 109.47257 * 300.00005 * 5 4 2 29 29 H 1.09007 * 109.47435 * 59.99631 * 5 4 2 30 30 H 1.08996 * 109.46763 * 180.02562 * 8 6 5 31 31 H 1.09005 * 109.46968 * 299.99758 * 8 6 5 32 32 H 1.08995 * 109.47115 * 59.99633 * 8 6 5 33 33 H 1.09004 * 109.46948 * 295.00256 * 9 6 5 34 34 H 1.08997 * 109.46956 * 55.00237 * 9 6 5 35 35 H 0.96995 * 120.00185 * 180.02562 * 13 12 10 36 36 H 1.08001 * 125.95511 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47356 * 89.97562 * 22 21 20 38 38 H 1.09000 * 109.47160 * 209.97493 * 22 21 20 39 39 H 1.08999 * 109.47474 * 329.97332 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5952 -0.5331 3.5744 7 1 1.9693 -1.4081 3.7499 8 6 4.0388 -0.9789 3.3327 9 6 2.5430 0.3850 4.7972 10 6 2.9309 -0.3942 6.0274 11 1 3.1893 -1.4395 5.9452 12 6 2.9560 0.2275 7.2578 13 7 2.6418 1.5007 7.3577 14 14 3.4376 -0.7381 8.7826 15 1 3.7436 -2.1410 8.4038 16 1 4.6369 -0.1193 9.4021 17 1 2.3144 -0.7219 9.7540 18 6 2.0323 -0.7104 -1.2305 19 7 2.0253 -2.0292 -1.4202 20 6 2.5312 -2.3115 -2.5933 21 7 2.8782 -1.1564 -3.1869 22 6 3.4826 -0.9970 -4.5118 23 7 2.5455 -0.1326 -2.2848 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.4496 -1.4979 1.4100 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6164 2.5526 30 1 4.4039 -1.5176 4.2070 31 1 4.0760 -1.6330 2.4615 32 1 4.6646 -0.1039 3.1570 33 1 3.2366 1.2144 4.6587 34 1 1.5316 0.7733 4.9170 35 1 2.6597 1.9382 8.2232 36 1 2.6493 -3.3001 -3.0117 37 1 2.6964 -0.8920 -5.2595 38 1 4.1123 -0.1073 -4.5193 39 1 4.0887 -1.8731 -4.7425 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602627872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:11 Heat of formation + Delta-G solvation = 73.712299 kcal Electronic energy + Delta-G solvation = -18186.199370 eV Core-core repulsion = 15358.241128 eV Total energy + Delta-G solvation = -2827.958242 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.08886 -37.40050 -34.99179 -33.65751 -32.17517 -31.21632 -29.34581 -27.28484 -26.66024 -25.15565 -23.47038 -22.38548 -21.83683 -20.14286 -18.94124 -17.06051 -16.30082 -16.07925 -15.45229 -14.89521 -14.66385 -14.40616 -14.09550 -13.67223 -13.39517 -13.27501 -12.67595 -12.53873 -12.14312 -11.91113 -11.81709 -11.43008 -11.30124 -11.21286 -10.81761 -10.69210 -10.22351 -10.20582 -9.96719 -9.82237 -9.63231 -9.56224 -9.06195 -8.88030 -8.27687 -8.03543 -5.92418 -3.92978 1.55871 2.20378 2.93353 3.36033 3.43443 3.48075 4.04217 4.24725 4.49939 4.56482 4.74133 4.78296 5.02996 5.05384 5.23043 5.37789 5.43544 5.65823 5.75837 5.85890 5.98841 6.09279 6.23139 6.27303 6.37474 6.50208 6.64637 6.72468 6.78728 7.09822 7.27359 7.27793 7.42738 7.74554 7.78784 7.92900 8.08613 8.11958 8.53102 9.13804 9.70182 11.19233 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.045780 B = 0.003555 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.468157 B = 7874.418011 C = 8109.113652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.176 3.824 3 H 0.097 0.903 4 N -0.673 5.673 5 C 0.065 3.935 6 C -0.081 4.081 7 H 0.055 0.945 8 C -0.122 4.122 9 C 0.027 3.973 10 C -0.510 4.510 11 H 0.057 0.943 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.251 3.749 19 N -0.525 5.525 20 C 0.247 3.753 21 N -0.391 5.391 22 C 0.099 3.901 23 N -0.322 5.322 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.348 0.652 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.258 0.742 36 H 0.216 0.784 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.227 -5.656 -23.375 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.063 3.937 3 H 0.115 0.885 4 N -0.305 5.305 5 C -0.064 4.064 6 C -0.100 4.100 7 H 0.073 0.927 8 C -0.180 4.180 9 C -0.010 4.010 10 C -0.548 4.548 11 H 0.075 0.925 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.033 4.033 19 N -0.252 5.252 20 C -0.050 4.050 21 N -0.183 5.183 22 C -0.043 4.043 23 N -0.151 5.151 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.167 0.833 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.232 0.768 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.550 -4.896 -23.347 23.861 hybrid contribution -0.490 -0.566 0.723 1.041 sum -1.040 -5.462 -22.624 23.297 Atomic orbital electron populations 1.22431 0.95433 1.02952 1.02599 1.19638 0.92641 0.96258 0.85200 0.88491 1.60323 1.57146 1.09965 1.03056 1.22215 0.99124 0.95152 0.89873 1.21191 0.96293 0.98702 0.93853 0.92682 1.21583 0.96318 1.00087 0.99992 1.19128 0.96935 0.94338 0.90648 1.21292 1.44917 0.96592 0.92032 0.92496 1.25022 0.95688 0.94881 0.99032 1.69977 1.49473 1.10023 1.24293 0.86582 0.78063 0.80304 0.83346 1.19737 1.21142 1.21153 1.24204 0.95780 0.88507 0.94766 1.70377 1.23561 1.15334 1.15879 1.26052 0.95554 0.93372 0.90063 1.50362 1.47369 1.04979 1.15563 1.21880 0.98639 1.04668 0.79130 1.78018 1.23098 1.11778 1.02174 0.91152 0.92336 0.91642 0.83313 0.91518 0.95384 0.92845 0.93919 0.94288 0.96564 0.96862 0.93213 0.76791 0.90516 0.89170 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.14 37.15 0.34 -1.80 16 2 C 0.18 2.52 3.13 -68.86 -0.22 2.30 16 3 H 0.10 1.40 7.80 -51.92 -0.40 1.00 16 4 N -0.67 -10.72 5.68 -107.95 -0.61 -11.33 16 5 C 0.06 1.15 4.87 -3.83 -0.02 1.13 16 6 C -0.08 -1.71 2.48 -90.62 -0.22 -1.94 16 7 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 8 C -0.12 -2.51 8.89 37.16 0.33 -2.18 16 9 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 10 C -0.51 -14.53 8.41 -34.44 -0.29 -14.82 16 11 H 0.06 1.59 7.06 -52.49 -0.37 1.22 16 12 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 14 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 C 0.25 3.72 6.99 -156.85 -1.10 2.62 16 19 N -0.53 -7.39 11.18 -11.97 -0.13 -7.52 16 20 C 0.25 2.52 12.66 -90.65 -1.15 1.37 16 21 N -0.39 -4.11 4.04 -69.45 -0.28 -4.39 16 22 C 0.10 0.51 11.53 59.84 0.69 1.20 16 23 N -0.32 -4.64 12.70 32.42 0.41 -4.22 16 24 H 0.07 0.85 7.45 -51.93 -0.39 0.46 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 27 H 0.35 5.44 8.47 -39.29 -0.33 5.11 16 28 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 29 H 0.03 0.49 7.44 -51.93 -0.39 0.10 16 30 H 0.05 1.16 6.95 -51.93 -0.36 0.79 16 31 H 0.04 0.81 7.75 -51.93 -0.40 0.41 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.22 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -34.34 326.35 -8.26 -42.60 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.42 Total: -0.40 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.85 Total: -10.05 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.12 Total: -54.09 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.34 -8.26 -42.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602627872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.316 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds