Wall clock time and date at job start Sun Mar 29 2020 23:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47302 * 2 1 4 4 N 1.40441 * 126.81913 * 89.97942 * 3 2 1 5 5 C 1.30720 * 106.79068 * 180.02562 * 4 3 2 6 6 N 1.33234 * 108.94479 * 0.24000 * 5 4 3 7 7 C 1.30832 * 109.83313 * 359.58957 * 6 5 4 8 8 C 1.50694 * 125.96616 * 180.19297 * 7 6 5 9 9 N 1.46906 * 109.47374 * 270.24776 * 8 7 6 10 10 C 1.46901 * 110.99920 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46945 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47341 * 304.99989 * 11 10 9 13 13 C 1.53004 * 109.47530 * 64.99810 * 11 10 9 14 14 C 1.53003 * 109.47293 * 184.99902 * 11 10 9 15 15 C 1.50697 * 109.47170 * 175.00123 * 14 11 10 16 16 H 1.08003 * 120.00221 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00073 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00021 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99715 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47189 * 90.00504 * 19 17 15 21 21 H 1.48497 * 109.47072 * 210.00640 * 19 17 15 22 22 H 1.48499 * 109.47256 * 330.00187 * 19 17 15 23 23 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46792 * 300.00449 * 1 2 3 25 25 H 1.09000 * 109.46804 * 59.99937 * 1 2 3 26 26 H 1.09004 * 109.46799 * 240.00037 * 2 1 3 27 27 H 1.08998 * 109.46680 * 120.00596 * 2 1 3 28 28 H 1.08002 * 125.52440 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.47419 * 30.24859 * 8 7 6 30 30 H 1.09000 * 109.47317 * 150.24577 * 8 7 6 31 31 H 1.00903 * 110.99862 * 303.95511 * 9 8 7 32 32 H 1.09007 * 109.47156 * 299.99883 * 10 9 8 33 33 H 1.09000 * 109.47349 * 60.00328 * 10 9 8 34 34 H 1.09000 * 109.46612 * 300.00486 * 13 11 10 35 35 H 1.09000 * 109.46662 * 59.99763 * 13 11 10 36 36 H 1.08993 * 109.47235 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.46743 * 295.00088 * 14 11 10 38 38 H 1.09002 * 109.46840 * 54.99805 * 14 11 10 39 39 H 0.97003 * 119.99613 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2986 2.1748 1.1243 5 6 2.7077 3.3329 0.6766 6 7 2.6944 3.3108 -0.6555 7 6 2.2870 2.1409 -1.0761 8 6 2.1393 1.7200 -2.5155 9 7 0.7851 2.0438 -2.9840 10 6 0.6042 1.6461 -4.3865 11 6 -0.8145 1.9991 -4.8377 12 1 -1.5356 1.5422 -4.1599 13 6 -0.9916 3.5188 -4.8217 14 6 -1.0442 1.4738 -6.2562 15 6 -2.4779 1.7124 -6.6543 16 1 -3.1575 2.1906 -5.9644 17 6 -2.9223 1.3195 -7.8989 18 7 -4.1737 1.5273 -8.2461 19 14 -1.7471 0.4918 -9.0919 20 1 -1.7880 -0.9784 -8.8874 21 1 -2.1511 0.8092 -10.4852 22 1 -0.3678 0.9869 -8.8517 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.0039 4.1728 1.2875 29 1 2.8711 2.2493 -3.1258 30 1 2.3055 0.6460 -2.5990 31 1 0.0867 1.6165 -2.3943 32 1 1.3254 2.1747 -5.0100 33 1 0.7595 0.5715 -4.4825 34 1 -0.8279 3.8930 -3.8111 35 1 -0.2705 3.9757 -5.4995 36 1 -2.0024 3.7702 -5.1427 37 1 -0.3832 1.9956 -6.9483 38 1 -0.8316 0.4052 -6.2867 39 1 -4.4862 1.2511 -9.1219 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602638227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:17 Heat of formation + Delta-G solvation = 74.623574 kcal Electronic energy + Delta-G solvation = -18414.008506 eV Core-core repulsion = 15586.089779 eV Total energy + Delta-G solvation = -2827.918726 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.23911 -37.25812 -35.35966 -34.31302 -32.25817 -31.14232 -30.37445 -27.77693 -26.60977 -24.53001 -24.19218 -22.06961 -21.91363 -20.44348 -19.15328 -17.32551 -16.77780 -16.07312 -15.77459 -15.30823 -14.72048 -14.43376 -14.24606 -14.00132 -13.45975 -13.27996 -13.06369 -12.79592 -12.50248 -12.28068 -11.94007 -11.75160 -11.69481 -11.49196 -10.96706 -10.74944 -10.42762 -10.07536 -9.95659 -9.89321 -9.80719 -9.68933 -9.43396 -9.09164 -8.53210 -8.42306 -6.03340 -4.00596 1.42281 2.09085 2.82941 3.29316 3.37686 3.40662 3.86398 4.16834 4.29830 4.45149 4.57374 4.61399 4.72404 4.84115 5.16007 5.24452 5.29890 5.35772 5.42253 5.54185 5.63552 5.75136 5.95088 6.15283 6.22732 6.31515 6.34356 6.54259 6.61307 6.79985 6.96821 7.04583 7.15727 7.23389 7.33955 7.46005 7.80682 8.00525 8.55685 9.02407 9.59246 11.10088 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035670 B = 0.004011 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.786178 B = 6979.656089 C = 7137.412854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 N -0.376 5.376 4 N -0.324 5.324 5 C 0.196 3.804 6 N -0.528 5.528 7 C 0.287 3.713 8 C 0.136 3.864 9 N -0.675 5.675 10 C 0.062 3.938 11 C -0.073 4.073 12 H 0.059 0.941 13 C -0.126 4.126 14 C -0.009 4.009 15 C -0.514 4.514 16 H 0.074 0.926 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.216 0.784 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.337 0.663 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.017 0.983 38 H 0.008 0.992 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.709 -3.367 15.597 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 N -0.168 5.168 4 N -0.152 5.152 5 C -0.107 4.107 6 N -0.255 5.255 7 C 0.010 3.990 8 C 0.004 3.996 9 N -0.308 5.308 10 C -0.066 4.066 11 C -0.092 4.092 12 H 0.077 0.923 13 C -0.183 4.183 14 C -0.046 4.046 15 C -0.552 4.552 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.101 0.899 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.232 0.768 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.026 0.974 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.750 -2.728 15.855 21.163 hybrid contribution 0.347 -1.561 -0.676 1.736 sum 14.098 -4.289 15.179 21.155 Atomic orbital electron populations 1.22229 0.93411 1.03696 1.03623 1.21816 0.95912 0.77627 1.04728 1.50508 1.49252 1.13010 1.04004 1.78006 1.23806 1.05048 1.08348 1.25975 0.98068 0.96035 0.90594 1.70499 1.24234 1.19580 1.11180 1.24264 0.95110 0.87273 0.92311 1.20409 0.94698 0.98647 0.85849 1.60504 1.01495 1.64234 1.04609 1.22266 1.00178 0.97493 0.86703 1.21014 0.92395 0.97085 0.98709 0.92273 1.21608 1.01865 0.94936 0.99904 1.19613 0.97992 0.95205 0.91835 1.21121 0.94064 1.39198 1.00781 0.90833 1.25031 0.94898 0.95586 0.98058 1.69915 1.15221 1.48078 1.21166 0.86808 0.82118 0.79975 0.80527 1.20473 1.21460 1.19022 0.89898 0.91348 0.91657 0.88576 0.88348 0.76761 0.87269 0.93218 0.84383 0.90766 0.95323 0.93653 0.93990 0.92179 0.96453 0.97368 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 37.16 0.38 -0.93 16 2 C 0.12 0.93 7.02 -4.04 -0.03 0.91 16 3 N -0.38 -4.26 3.64 -58.34 -0.21 -4.47 16 4 N -0.32 -4.11 12.70 29.29 0.37 -3.74 16 5 C 0.20 2.37 13.03 -91.81 -1.20 1.17 16 6 N -0.53 -7.37 11.19 -11.97 -0.13 -7.50 16 7 C 0.29 3.57 7.50 -155.70 -1.17 2.41 16 8 C 0.14 1.49 6.01 -4.98 -0.03 1.46 16 9 N -0.68 -8.83 5.94 -115.06 -0.68 -9.51 16 10 C 0.06 0.91 5.07 -3.83 -0.02 0.89 16 11 C -0.07 -1.37 2.48 -90.62 -0.22 -1.59 16 12 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.13 -2.38 8.89 37.16 0.33 -2.05 16 14 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 15 C -0.51 -14.23 8.96 -34.44 -0.31 -14.54 16 16 H 0.07 2.20 7.30 -52.48 -0.38 1.82 16 17 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.57 6.33 -51.93 -0.33 0.25 16 26 H 0.10 0.56 7.11 -51.93 -0.37 0.19 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.22 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.43 7.13 -51.93 -0.37 0.06 16 31 H 0.34 4.23 6.91 -39.29 -0.27 3.96 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 37 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 38 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -32.81 319.57 -8.42 -41.23 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.22 Total: 0.14 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.46 Total: -10.79 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.12 Total: -52.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.81 -8.42 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602638227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.853 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds