Wall clock time and date at job start Sun Mar 29 2020 23:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47302 * 2 1 4 4 N 1.40441 * 126.81913 * 89.97942 * 3 2 1 5 5 C 1.30720 * 106.79068 * 180.02562 * 4 3 2 6 6 N 1.33234 * 108.94479 * 0.24000 * 5 4 3 7 7 C 1.30832 * 109.83313 * 359.58957 * 6 5 4 8 8 C 1.50694 * 125.96616 * 180.19297 * 7 6 5 9 9 N 1.46906 * 109.47374 * 270.24776 * 8 7 6 10 10 C 1.46901 * 110.99920 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46945 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47341 * 304.99989 * 11 10 9 13 13 C 1.53004 * 109.47530 * 64.99810 * 11 10 9 14 14 C 1.53003 * 109.47293 * 184.99902 * 11 10 9 15 15 C 1.50697 * 109.47170 * 175.00123 * 14 11 10 16 16 H 1.08003 * 120.00221 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00073 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00021 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99715 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47189 * 90.00504 * 19 17 15 21 21 H 1.48497 * 109.47072 * 210.00640 * 19 17 15 22 22 H 1.48499 * 109.47256 * 330.00187 * 19 17 15 23 23 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46792 * 300.00449 * 1 2 3 25 25 H 1.09000 * 109.46804 * 59.99937 * 1 2 3 26 26 H 1.09004 * 109.46799 * 240.00037 * 2 1 3 27 27 H 1.08998 * 109.46680 * 120.00596 * 2 1 3 28 28 H 1.08002 * 125.52440 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.47419 * 30.24859 * 8 7 6 30 30 H 1.09000 * 109.47317 * 150.24577 * 8 7 6 31 31 H 1.00903 * 110.99862 * 303.95511 * 9 8 7 32 32 H 1.09007 * 109.47156 * 299.99883 * 10 9 8 33 33 H 1.09000 * 109.47349 * 60.00328 * 10 9 8 34 34 H 1.09000 * 109.46612 * 300.00486 * 13 11 10 35 35 H 1.09000 * 109.46662 * 59.99763 * 13 11 10 36 36 H 1.08993 * 109.47235 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.46743 * 295.00088 * 14 11 10 38 38 H 1.09002 * 109.46840 * 54.99805 * 14 11 10 39 39 H 0.97003 * 119.99613 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2986 2.1748 1.1243 5 6 2.7077 3.3329 0.6766 6 7 2.6944 3.3108 -0.6555 7 6 2.2870 2.1409 -1.0761 8 6 2.1393 1.7200 -2.5155 9 7 0.7851 2.0438 -2.9840 10 6 0.6042 1.6461 -4.3865 11 6 -0.8145 1.9991 -4.8377 12 1 -1.5356 1.5422 -4.1599 13 6 -0.9916 3.5188 -4.8217 14 6 -1.0442 1.4738 -6.2562 15 6 -2.4779 1.7124 -6.6543 16 1 -3.1575 2.1906 -5.9644 17 6 -2.9223 1.3195 -7.8989 18 7 -4.1737 1.5273 -8.2461 19 14 -1.7471 0.4918 -9.0919 20 1 -1.7880 -0.9784 -8.8874 21 1 -2.1511 0.8092 -10.4852 22 1 -0.3678 0.9869 -8.8517 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.0039 4.1728 1.2875 29 1 2.8711 2.2493 -3.1258 30 1 2.3055 0.6460 -2.5990 31 1 0.0867 1.6165 -2.3943 32 1 1.3254 2.1747 -5.0100 33 1 0.7595 0.5715 -4.4825 34 1 -0.8279 3.8930 -3.8111 35 1 -0.2705 3.9757 -5.4995 36 1 -2.0024 3.7702 -5.1427 37 1 -0.3832 1.9956 -6.9483 38 1 -0.8316 0.4052 -6.2867 39 1 -4.4862 1.2511 -9.1219 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602638227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:17 Heat of formation + Delta-G solvation = 53.368433 kcal Electronic energy + Delta-G solvation = -18414.930198 eV Core-core repulsion = 15586.089779 eV Total energy + Delta-G solvation = -2828.840419 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.10652 -38.49542 -36.27096 -35.60336 -34.13533 -32.24018 -31.15158 -29.50680 -27.82926 -25.83113 -24.98616 -23.64688 -22.80808 -21.36509 -20.61066 -18.91549 -18.07365 -17.02312 -16.72862 -16.38870 -16.07513 -15.68472 -15.46889 -14.99129 -14.79518 -14.48896 -14.16318 -13.93912 -13.72025 -13.50928 -13.21782 -12.95929 -12.81494 -12.74547 -12.36607 -12.17551 -12.06709 -11.77305 -11.42968 -11.24383 -11.04213 -10.99649 -10.75492 -10.70118 -10.58586 -9.40172 -8.22814 -6.25392 0.54488 1.34436 1.38916 1.42009 1.53284 1.92281 2.41111 3.00906 3.12924 3.35334 3.51819 3.83186 3.99433 4.00616 4.13973 4.26797 4.30316 4.45267 4.49577 4.55826 4.74628 4.78719 4.87288 4.93885 4.96808 5.13776 5.14674 5.33279 5.41983 5.43014 5.47493 5.57071 5.72227 5.75548 5.80623 5.98496 6.31859 6.38672 6.83012 7.12359 7.38264 8.94143 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035670 B = 0.004011 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.786178 B = 6979.656089 C = 7137.412854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.373 5.373 4 N -0.345 5.345 5 C 0.189 3.811 6 N -0.561 5.561 7 C 0.280 3.720 8 C 0.140 3.860 9 N -0.686 5.686 10 C 0.076 3.924 11 C -0.069 4.069 12 H 0.050 0.950 13 C -0.118 4.118 14 C -0.006 4.006 15 C -0.519 4.519 16 H 0.031 0.969 17 C -0.001 4.001 18 N -0.957 5.957 19 Si 0.950 3.050 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.243 1.243 23 H 0.105 0.895 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.121 0.879 27 H 0.110 0.890 28 H 0.242 0.758 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.340 0.660 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.021 0.979 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.227 -4.945 15.716 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.007 4.007 3 N -0.165 5.165 4 N -0.174 5.174 5 C -0.113 4.113 6 N -0.289 5.289 7 C 0.003 3.997 8 C 0.009 3.991 9 N -0.320 5.320 10 C -0.052 4.052 11 C -0.088 4.088 12 H 0.068 0.932 13 C -0.175 4.175 14 C -0.044 4.044 15 C -0.557 4.557 16 H 0.049 0.951 17 C -0.197 4.197 18 N -0.598 5.598 19 Si 0.773 3.227 20 H -0.191 1.191 21 H -0.217 1.217 22 H -0.166 1.166 23 H 0.123 0.877 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.139 0.861 27 H 0.128 0.872 28 H 0.258 0.742 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.159 0.841 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.282 -4.320 16.004 23.235 hybrid contribution -0.525 -1.029 -0.611 1.306 sum 15.757 -5.349 15.393 22.668 Atomic orbital electron populations 1.22198 0.93459 1.04683 1.02154 1.22167 0.95815 0.76165 1.06582 1.50727 1.48551 1.13868 1.03353 1.77951 1.24414 1.05565 1.09421 1.26558 0.97587 0.96710 0.90442 1.70476 1.25442 1.20813 1.12192 1.24465 0.95009 0.87238 0.93003 1.20456 0.93228 1.00516 0.84913 1.60363 1.02835 1.64886 1.03870 1.21973 0.96888 0.98667 0.87665 1.20883 0.95324 0.96297 0.96343 0.93162 1.21510 0.99754 0.95636 1.00606 1.19565 0.94458 0.96123 0.94262 1.21480 0.96177 1.37965 1.00091 0.95064 1.26038 0.96694 0.96581 1.00367 1.70088 1.17714 1.50086 1.21930 0.85667 0.80441 0.79247 0.77323 1.19109 1.21653 1.16613 0.87684 0.92994 0.92854 0.86073 0.87182 0.74158 0.87136 0.90097 0.84076 0.90268 0.93432 0.92309 0.93588 0.95666 0.96158 0.96025 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 71.98 0.74 -1.48 16 2 C 0.11 1.44 7.02 86.38 0.61 2.05 16 3 N -0.37 -7.73 3.64 -338.48 -1.23 -8.96 16 4 N -0.35 -8.34 12.70 -61.24 -0.78 -9.11 16 5 C 0.19 4.37 13.03 180.77 2.36 6.72 16 6 N -0.56 -14.95 11.19 -191.78 -2.15 -17.09 16 7 C 0.28 6.40 7.50 138.22 1.04 7.43 16 8 C 0.14 2.65 6.01 85.55 0.51 3.16 16 9 N -0.69 -16.13 5.94 -517.93 -3.08 -19.21 16 10 C 0.08 2.01 5.07 86.30 0.44 2.45 16 11 C -0.07 -2.51 2.48 -10.79 -0.03 -2.54 16 12 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 13 C -0.12 -4.43 8.89 71.98 0.64 -3.79 16 14 C -0.01 -0.27 3.52 29.85 0.10 -0.17 16 15 C -0.52 -29.23 8.96 25.60 0.23 -29.00 16 16 H 0.03 1.96 7.30 -2.91 -0.02 1.94 16 17 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 18 N -0.96 -60.09 13.96 21.45 0.30 -59.79 16 19 Si 0.95 43.34 27.47 68.60 1.88 45.22 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 23 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.85 6.33 -2.39 -0.02 0.83 16 26 H 0.12 0.94 7.11 -2.39 -0.02 0.92 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.24 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.08 1.04 7.13 -2.39 -0.02 1.03 16 31 H 0.34 7.77 6.91 -89.69 -0.62 7.15 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 2.02 7.75 -2.39 -0.02 2.00 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.02 1.08 6.95 -2.39 -0.02 1.07 16 37 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 38 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 39 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.37 319.57 2.40 -69.96 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.35 Total: 13.74 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 7.10 Total: -14.76 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -6.93 Total: -114.16 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -72.37 2.40 -69.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602638227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.331 kcal (2) G-P(sol) polarization free energy of solvation -72.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds