Wall clock time and date at job start Sun Mar 29 2020 23:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46881 * 2 1 4 4 C 1.53008 * 109.47069 * 240.00509 * 2 1 3 5 5 C 1.50702 * 109.46984 * 64.99507 * 4 2 1 6 6 H 1.07998 * 120.00156 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99553 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00121 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99864 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47223 * 89.99973 * 9 7 5 11 11 H 1.48499 * 109.47239 * 209.99930 * 9 7 5 12 12 H 1.48497 * 109.47357 * 330.00090 * 9 7 5 13 13 C 1.52998 * 109.47444 * 120.00240 * 2 1 3 14 14 N 1.46903 * 109.46800 * 295.00227 * 13 2 1 15 15 C 1.46900 * 110.99496 * 180.02562 * 14 13 2 16 16 H 1.08993 * 109.47621 * 34.99370 * 15 14 13 17 17 C 1.53005 * 109.46771 * 274.99623 * 15 14 13 18 18 C 1.50702 * 109.46879 * 155.00413 * 15 14 13 19 19 N 1.30825 * 125.96432 * 45.03354 * 18 15 14 20 20 C 1.33251 * 109.82850 * 179.97438 * 19 18 15 21 21 N 1.30709 * 108.94310 * 0.02562 * 20 19 18 22 22 N 1.34434 * 125.95434 * 224.99659 * 18 15 14 23 23 C 1.46499 * 126.82568 * 359.76629 * 22 18 15 24 24 H 1.09007 * 109.47342 * 60.00076 * 1 2 3 25 25 H 1.09000 * 109.46761 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47067 * 299.99517 * 1 2 3 27 27 H 1.08996 * 109.46523 * 184.99844 * 4 2 1 28 28 H 1.08998 * 109.46613 * 304.99787 * 4 2 1 29 29 H 0.96999 * 120.00085 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47100 * 175.00275 * 13 2 1 31 31 H 1.09000 * 109.46999 * 54.99554 * 13 2 1 32 32 H 1.00898 * 110.99825 * 303.94806 * 14 13 2 33 33 H 1.09006 * 109.47040 * 180.02562 * 17 15 14 34 34 H 1.09009 * 109.47200 * 300.00227 * 17 15 14 35 35 H 1.08993 * 109.47094 * 60.00287 * 17 15 14 36 36 H 1.07997 * 125.52448 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.46920 * 90.00102 * 23 22 18 38 38 H 1.08999 * 109.47205 * 209.99603 * 23 22 18 39 39 H 1.08998 * 109.47316 * 330.00276 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8513 9 14 1.4986 0.5631 -5.2497 10 1 2.5646 1.5419 -5.5825 11 1 1.3108 -0.3707 -6.3890 12 1 0.2279 1.2853 -4.9870 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6266 3.6670 16 1 3.0896 -1.0976 3.4737 17 6 1.1142 -1.6920 4.0942 18 6 2.2764 0.3927 4.7668 19 7 1.4143 1.3288 5.0700 20 6 1.8702 2.0486 6.0945 21 7 3.0344 1.5786 6.4585 22 7 3.3199 0.4982 5.6078 23 6 4.5148 -0.3489 5.6351 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1263 -0.7993 -1.2056 28 1 1.6054 -1.7197 -1.2953 29 1 2.9227 -1.8419 -4.7319 30 1 3.1264 -0.7994 1.2055 31 1 1.6054 -1.7198 1.2951 32 1 1.9882 0.9872 2.3966 33 1 1.4660 -2.1844 5.0008 34 1 0.1503 -1.2209 4.2876 35 1 1.0052 -2.4292 3.2988 36 1 1.3609 2.8851 6.5496 37 1 5.2775 0.0776 4.9834 38 1 4.8976 -0.4046 6.6541 39 1 4.2587 -1.3498 5.2879 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602648221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:17 Heat of formation + Delta-G solvation = 74.729979 kcal Electronic energy + Delta-G solvation = -18424.362456 eV Core-core repulsion = 15596.448343 eV Total energy + Delta-G solvation = -2827.914112 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.25896 -37.43692 -34.88553 -34.15549 -32.38641 -30.94332 -29.42864 -27.51918 -26.77259 -25.39919 -23.58828 -22.36322 -21.83646 -20.03215 -19.08755 -17.24976 -16.31059 -16.17798 -15.79769 -15.13760 -14.58218 -14.30892 -14.14897 -13.72954 -13.37693 -13.32377 -12.88967 -12.56245 -12.19201 -12.10255 -11.94999 -11.60659 -11.36350 -11.18306 -10.85648 -10.72787 -10.26840 -10.25143 -10.06524 -9.87666 -9.71366 -9.68669 -9.14542 -8.95710 -8.32424 -8.23756 -5.97495 -3.98279 1.42212 2.09666 2.84980 3.33765 3.40186 3.44062 3.88200 4.09739 4.35673 4.49555 4.65555 4.78900 4.88521 5.08515 5.13645 5.28117 5.38633 5.58237 5.68522 5.76365 5.82270 6.10519 6.13086 6.23121 6.30827 6.40887 6.53025 6.58716 6.71799 7.00543 7.17697 7.22058 7.29380 7.53883 7.69192 7.84885 8.00633 8.02766 8.47088 9.08072 9.65233 11.14078 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037251 B = 0.003823 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.479530 B = 7321.400915 C = 7424.986077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.062 3.938 14 N -0.664 5.664 15 C 0.166 3.834 16 H 0.060 0.940 17 C -0.134 4.134 18 C 0.278 3.722 19 N -0.518 5.518 20 C 0.196 3.804 21 N -0.326 5.326 22 N -0.382 5.382 23 C 0.093 3.907 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.012 0.988 28 H 0.017 0.983 29 H 0.259 0.741 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.345 0.655 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.217 0.783 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 0.610 19.093 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.066 4.066 14 N -0.297 5.297 15 C 0.053 3.947 16 H 0.077 0.923 17 C -0.193 4.193 18 C 0.001 3.999 19 N -0.245 5.245 20 C -0.107 4.107 21 N -0.154 5.154 22 N -0.173 5.173 23 C -0.050 4.050 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.164 0.836 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.403 0.521 19.438 19.495 hybrid contribution 0.980 0.561 -0.993 1.504 sum 2.383 1.083 18.444 18.629 Atomic orbital electron populations 1.21594 0.95469 1.00629 1.00391 1.21196 0.96256 0.98890 0.93689 0.92816 1.19125 0.95829 0.95620 0.90418 1.21244 1.34558 1.08267 0.90964 0.92524 1.25012 0.95347 0.95076 0.99089 1.69962 1.39200 1.21244 1.23364 0.86632 0.78967 0.79810 0.82839 1.20797 1.21310 1.19833 1.22302 0.97099 0.98004 0.89198 1.60600 1.63544 1.05783 0.99814 1.20048 0.98203 0.90316 0.86109 0.92261 1.21778 0.99685 0.97180 1.00665 1.24537 0.84518 0.96636 0.94252 1.70550 1.29800 1.07722 1.16431 1.26046 0.91015 1.00023 0.93607 1.78022 1.18848 1.02109 1.16462 1.50333 1.17280 1.24696 1.24994 1.21981 0.84655 0.93378 1.04937 0.92797 0.94131 0.93608 0.97004 0.96468 0.93125 0.95673 0.91043 0.83639 0.93052 0.90674 0.90906 0.76657 0.90077 0.88857 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.63 2.48 -90.62 -0.22 -1.85 16 3 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.01 4.87 -3.82 -0.02 0.99 16 14 N -0.66 -9.55 5.75 -107.95 -0.62 -10.17 16 15 C 0.17 1.97 2.90 -68.86 -0.20 1.77 16 16 H 0.06 0.62 6.80 -51.93 -0.35 0.26 16 17 C -0.13 -1.47 9.40 37.16 0.35 -1.12 16 18 C 0.28 3.53 6.47 -155.69 -1.01 2.52 16 19 N -0.52 -7.28 11.18 -11.97 -0.13 -7.41 16 20 C 0.20 2.39 13.03 -91.81 -1.20 1.19 16 21 N -0.33 -4.19 12.70 29.29 0.37 -3.82 16 22 N -0.38 -4.42 4.04 -65.10 -0.26 -4.68 16 23 C 0.09 0.66 11.11 59.85 0.66 1.33 16 24 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.81 7.75 -51.93 -0.40 0.41 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.40 8.05 -51.93 -0.42 -0.01 16 31 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 32 H 0.34 5.17 8.35 -39.29 -0.33 4.84 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 36 H 0.22 1.79 8.06 -52.49 -0.42 1.36 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.49 7.39 -51.93 -0.38 0.10 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -32.41 324.02 -8.19 -40.60 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.33 Total: -0.29 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.81 Total: -9.72 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.09 Total: -52.13 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.41 -8.19 -40.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602648221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.334 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds