Wall clock time and date at job start Sun Mar 29 2020 23:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46881 * 2 1 4 4 C 1.53008 * 109.47069 * 240.00509 * 2 1 3 5 5 C 1.50702 * 109.46984 * 64.99507 * 4 2 1 6 6 H 1.07998 * 120.00156 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99553 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00121 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99864 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47223 * 89.99973 * 9 7 5 11 11 H 1.48499 * 109.47239 * 209.99930 * 9 7 5 12 12 H 1.48497 * 109.47357 * 330.00090 * 9 7 5 13 13 C 1.52998 * 109.47444 * 120.00240 * 2 1 3 14 14 N 1.46903 * 109.46800 * 295.00227 * 13 2 1 15 15 C 1.46900 * 110.99496 * 180.02562 * 14 13 2 16 16 H 1.08993 * 109.47621 * 34.99370 * 15 14 13 17 17 C 1.53005 * 109.46771 * 274.99623 * 15 14 13 18 18 C 1.50702 * 109.46879 * 155.00413 * 15 14 13 19 19 N 1.30825 * 125.96432 * 45.03354 * 18 15 14 20 20 C 1.33251 * 109.82850 * 179.97438 * 19 18 15 21 21 N 1.30709 * 108.94310 * 0.02562 * 20 19 18 22 22 N 1.34434 * 125.95434 * 224.99659 * 18 15 14 23 23 C 1.46499 * 126.82568 * 359.76629 * 22 18 15 24 24 H 1.09007 * 109.47342 * 60.00076 * 1 2 3 25 25 H 1.09000 * 109.46761 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47067 * 299.99517 * 1 2 3 27 27 H 1.08996 * 109.46523 * 184.99844 * 4 2 1 28 28 H 1.08998 * 109.46613 * 304.99787 * 4 2 1 29 29 H 0.96999 * 120.00085 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47100 * 175.00275 * 13 2 1 31 31 H 1.09000 * 109.46999 * 54.99554 * 13 2 1 32 32 H 1.00898 * 110.99825 * 303.94806 * 14 13 2 33 33 H 1.09006 * 109.47040 * 180.02562 * 17 15 14 34 34 H 1.09009 * 109.47200 * 300.00227 * 17 15 14 35 35 H 1.08993 * 109.47094 * 60.00287 * 17 15 14 36 36 H 1.07997 * 125.52448 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.46920 * 90.00102 * 23 22 18 38 38 H 1.08999 * 109.47205 * 209.99603 * 23 22 18 39 39 H 1.08998 * 109.47316 * 330.00276 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8513 9 14 1.4986 0.5631 -5.2497 10 1 2.5646 1.5419 -5.5825 11 1 1.3108 -0.3707 -6.3890 12 1 0.2279 1.2853 -4.9870 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6266 3.6670 16 1 3.0896 -1.0976 3.4737 17 6 1.1142 -1.6920 4.0942 18 6 2.2764 0.3927 4.7668 19 7 1.4143 1.3288 5.0700 20 6 1.8702 2.0486 6.0945 21 7 3.0344 1.5786 6.4585 22 7 3.3199 0.4982 5.6078 23 6 4.5148 -0.3489 5.6351 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1263 -0.7993 -1.2056 28 1 1.6054 -1.7197 -1.2953 29 1 2.9227 -1.8419 -4.7319 30 1 3.1264 -0.7994 1.2055 31 1 1.6054 -1.7198 1.2951 32 1 1.9882 0.9872 2.3966 33 1 1.4660 -2.1844 5.0008 34 1 0.1503 -1.2209 4.2876 35 1 1.0052 -2.4292 3.2988 36 1 1.3609 2.8851 6.5496 37 1 5.2775 0.0776 4.9834 38 1 4.8976 -0.4046 6.6541 39 1 4.2587 -1.3498 5.2879 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602648221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:16 Heat of formation + Delta-G solvation = 54.267524 kcal Electronic energy + Delta-G solvation = -18425.249775 eV Core-core repulsion = 15596.448343 eV Total energy + Delta-G solvation = -2828.801431 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.15257 -38.70389 -36.38116 -35.01949 -34.27523 -32.13424 -30.51078 -28.68369 -28.22019 -26.79482 -25.03934 -23.66656 -22.86121 -21.12160 -20.53848 -18.50729 -18.04528 -17.05546 -16.92696 -16.49970 -16.06419 -15.59989 -15.34586 -14.88508 -14.46038 -14.19269 -14.07585 -13.94444 -13.52806 -13.39149 -13.15404 -13.00419 -12.75609 -12.72848 -12.46820 -12.25549 -12.12980 -11.92174 -11.45002 -11.05456 -11.00667 -10.94481 -10.74314 -10.55138 -10.50311 -9.38476 -8.15439 -6.23471 0.52246 1.33054 1.41717 1.42243 1.53391 1.92907 2.43920 3.00637 3.07097 3.18402 3.62602 3.79391 4.11057 4.14750 4.22488 4.32133 4.41008 4.50314 4.57020 4.59715 4.73939 4.89728 4.95398 4.98743 5.06064 5.26308 5.33443 5.34941 5.45565 5.50966 5.56154 5.59752 5.73815 5.85015 5.92709 6.04076 6.32853 6.35683 6.92391 7.10304 7.44533 8.96409 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037251 B = 0.003823 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.479530 B = 7321.400915 C = 7424.986077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.048 0.952 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.077 3.923 14 N -0.667 5.667 15 C 0.168 3.832 16 H 0.081 0.919 17 C -0.129 4.129 18 C 0.270 3.730 19 N -0.549 5.549 20 C 0.190 3.810 21 N -0.346 5.346 22 N -0.380 5.380 23 C 0.081 3.919 24 H 0.033 0.967 25 H 0.039 0.961 26 H 0.063 0.937 27 H -0.011 1.011 28 H -0.005 1.005 29 H 0.262 0.738 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.341 0.659 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.244 0.756 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 0.873 19.835 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.190 1.190 13 C -0.051 4.051 14 N -0.300 5.300 15 C 0.056 3.944 16 H 0.098 0.902 17 C -0.188 4.188 18 C -0.007 4.007 19 N -0.277 5.277 20 C -0.112 4.112 21 N -0.174 5.174 22 N -0.171 5.171 23 C -0.060 4.060 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.007 0.993 28 H 0.013 0.987 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.260 0.740 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.445 0.780 20.199 20.266 hybrid contribution 1.010 0.464 -1.169 1.613 sum 2.454 1.244 19.030 19.228 Atomic orbital electron populations 1.21482 0.94792 1.00537 1.00249 1.21001 0.96672 0.98261 0.93338 0.93346 1.19007 0.94240 0.94796 0.92373 1.21652 1.34324 1.08498 0.92238 0.92418 1.25881 0.95334 0.96054 1.02426 1.70082 1.40345 1.22815 1.24218 0.85570 0.78952 0.78457 0.78830 1.20031 1.20883 1.18957 1.21992 0.97032 0.97701 0.88409 1.60516 1.63906 1.05535 1.00015 1.20120 0.99424 0.90173 0.84727 0.90168 1.21742 0.98636 0.96782 1.01649 1.24549 0.84878 0.96658 0.94605 1.70515 1.31023 1.08674 1.17461 1.26632 0.90944 1.00474 0.93176 1.77970 1.19308 1.02819 1.17307 1.50579 1.17863 1.24469 1.24229 1.22364 0.83561 0.93845 1.06187 0.94749 0.94174 0.91769 0.99259 0.98687 0.92967 0.95438 0.90611 0.84025 0.91016 0.92336 0.90739 0.73989 0.89206 0.87633 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.07 -2.93 2.48 -10.79 -0.03 -2.96 16 3 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -29.72 8.41 25.60 0.22 -29.50 16 6 H 0.06 3.16 7.06 -2.91 -0.02 3.14 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 9 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.08 2.43 4.87 86.30 0.42 2.85 16 14 N -0.67 -18.19 5.75 -495.44 -2.85 -21.04 16 15 C 0.17 3.65 2.90 44.17 0.13 3.78 16 16 H 0.08 1.44 6.80 -2.39 -0.02 1.42 16 17 C -0.13 -2.57 9.40 71.98 0.68 -1.89 16 18 C 0.27 6.43 6.47 138.23 0.89 7.33 16 19 N -0.55 -14.79 11.18 -191.77 -2.14 -16.93 16 20 C 0.19 4.40 13.03 180.76 2.36 6.75 16 21 N -0.35 -8.39 12.70 -61.24 -0.78 -9.17 16 22 N -0.38 -8.09 4.04 -359.87 -1.45 -9.54 16 23 C 0.08 0.96 11.11 127.77 1.42 2.38 16 24 H 0.03 1.41 6.95 -2.38 -0.02 1.40 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 2.20 7.75 -2.39 -0.02 2.18 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.03 0.85 8.05 -2.39 -0.02 0.83 16 31 H 0.08 2.33 7.44 -2.39 -0.02 2.31 16 32 H 0.34 9.82 8.35 -89.70 -0.75 9.07 16 33 H 0.07 1.12 8.14 -2.38 -0.02 1.11 16 34 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.07 1.46 7.45 -2.39 -0.02 1.44 16 36 H 0.24 3.68 8.06 -2.91 -0.02 3.65 16 37 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 0.84 7.39 -2.39 -0.02 0.83 16 Total: -1.00 -69.37 324.02 2.68 -66.68 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.28 Total: 12.24 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 7.32 Total: -12.62 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -6.94 Total: -112.74 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.37 2.68 -66.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602648221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.952 kcal (2) G-P(sol) polarization free energy of solvation -69.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds