Wall clock time and date at job start Sun Mar 29 2020 23:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 5 5 C 1.50708 * 109.47042 * 65.00504 * 4 2 1 6 6 H 1.08004 * 119.99423 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47520 * 119.99783 * 9 7 5 12 12 H 1.48505 * 109.46905 * 239.99703 * 9 7 5 13 13 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 14 14 N 1.46901 * 109.46916 * 294.99594 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47224 * 325.00460 * 15 14 13 17 17 C 1.53002 * 109.47102 * 85.00132 * 15 14 13 18 18 C 1.50702 * 109.47206 * 205.00135 * 15 14 13 19 19 N 1.30835 * 125.95922 * 315.02888 * 18 15 14 20 20 C 1.33242 * 109.82855 * 180.02562 * 19 18 15 21 21 N 1.30715 * 108.94205 * 359.97438 * 20 19 18 22 22 N 1.34424 * 125.95896 * 134.71669 * 18 15 14 23 23 C 1.46493 * 126.82633 * 0.02562 * 22 18 15 24 24 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 26 26 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 27 27 H 1.09008 * 109.47139 * 185.00096 * 4 2 1 28 28 H 1.09001 * 109.47414 * 305.00040 * 4 2 1 29 29 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46889 * 174.99975 * 13 2 1 31 31 H 1.08995 * 109.47384 * 54.99615 * 13 2 1 32 32 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 33 33 H 1.08996 * 109.46950 * 299.99914 * 17 15 14 34 34 H 1.09003 * 109.46813 * 60.00077 * 17 15 14 35 35 H 1.08999 * 109.47105 * 180.02562 * 17 15 14 36 36 H 1.07994 * 125.52813 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.47246 * 90.00412 * 23 22 18 38 38 H 1.09004 * 109.47463 * 209.99796 * 23 22 18 39 39 H 1.08998 * 109.47614 * 330.00178 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 2.6753 -1.5195 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 0.7424 1.7743 -4.8434 11 1 2.7170 0.9664 -5.9965 12 1 0.6440 -0.2859 -6.1184 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1257 -0.6265 3.6672 16 1 2.0823 -1.7074 3.5335 17 6 3.5692 -0.2049 3.9491 18 6 1.2504 -0.2283 4.8276 19 7 0.8444 0.9846 5.1030 20 6 0.0874 0.9698 6.1994 21 7 0.0005 -0.2584 6.6385 22 7 0.7458 -1.0583 5.7569 23 6 0.9387 -2.5082 5.8368 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.1263 -0.7996 -1.2055 28 1 1.6053 -1.7199 -1.2950 29 1 2.9226 -1.8425 -4.7317 30 1 3.1262 -0.7995 1.2056 31 1 1.6052 -1.7198 1.2953 32 1 1.9882 0.9873 2.3966 33 1 4.2022 -0.4929 3.1098 34 1 3.6125 0.8760 4.0828 35 1 3.9213 -0.6979 4.8552 36 1 -0.3793 1.8324 6.6515 37 1 1.8218 -2.7248 6.4381 38 1 0.0638 -2.9663 6.2983 39 1 1.0741 -2.9127 4.8338 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602648224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:26 Heat of formation + Delta-G solvation = 72.886156 kcal Electronic energy + Delta-G solvation = -18431.757196 eV Core-core repulsion = 15603.763129 eV Total energy + Delta-G solvation = -2827.994067 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.12605 -37.52714 -34.90946 -34.08268 -32.37936 -30.93033 -29.26159 -27.41888 -26.74009 -25.33940 -23.70231 -22.43041 -21.82866 -20.12593 -19.05281 -17.20920 -16.30104 -16.11861 -15.18275 -15.06470 -14.81263 -14.43572 -14.23535 -13.57279 -13.41273 -13.34758 -12.87922 -12.68736 -12.41077 -12.15761 -11.67114 -11.54444 -11.45915 -11.33965 -10.86571 -10.75814 -10.28802 -10.27367 -9.98866 -9.76430 -9.71754 -9.60637 -9.14441 -8.95463 -8.33204 -8.22966 -5.98022 -3.98744 1.55791 2.20356 2.95824 3.32578 3.40364 3.44851 3.99357 4.25227 4.42232 4.49951 4.65657 4.83971 4.90253 4.94209 5.16229 5.26741 5.38232 5.51476 5.58251 5.67213 5.81936 5.96447 6.13667 6.21113 6.37502 6.41542 6.52590 6.67652 6.70482 6.98706 7.16621 7.19637 7.28296 7.57835 7.69022 7.84175 8.02270 8.11192 8.46601 9.07839 9.64925 11.13572 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041345 B = 0.003814 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.072932 B = 7340.058280 C = 7532.319303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.671 5.671 15 C 0.162 3.838 16 H 0.095 0.905 17 C -0.176 4.176 18 C 0.301 3.699 19 N -0.529 5.529 20 C 0.197 3.803 21 N -0.331 5.331 22 N -0.383 5.383 23 C 0.095 3.905 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.259 0.741 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.352 0.648 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.215 0.785 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -0.828 18.992 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.303 5.303 15 C 0.048 3.952 16 H 0.113 0.887 17 C -0.236 4.236 18 C 0.024 3.976 19 N -0.256 5.256 20 C -0.106 4.106 21 N -0.159 5.159 22 N -0.174 5.174 23 C -0.048 4.048 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.172 0.828 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.231 0.769 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.295 -1.233 19.356 19.439 hybrid contribution 0.722 0.410 -0.977 1.282 sum -0.573 -0.824 18.379 18.407 Atomic orbital electron populations 1.21592 0.95700 1.00468 1.00313 1.21196 0.96039 0.99089 0.93735 0.92560 1.19129 0.95915 0.95551 0.90423 1.21283 1.34444 1.08291 0.90950 0.92466 1.25011 0.95341 0.95089 0.99103 1.69971 1.39245 1.21284 1.23256 0.86581 0.78249 0.80182 0.83283 1.19709 1.21115 1.21112 1.22247 0.97520 0.97527 0.89105 1.60361 1.63753 1.06371 0.99840 1.19907 0.89683 0.99241 0.86348 0.88710 1.22456 0.95461 1.03106 1.02540 1.24367 0.95197 0.85881 0.92177 1.70453 1.17600 1.20995 1.16543 1.25954 0.97053 0.95257 0.92337 1.78000 1.17846 1.03848 1.16195 1.50226 1.37822 1.08729 1.20589 1.21947 1.03705 0.74885 1.04250 0.94301 0.93864 0.92717 0.96861 0.96579 0.93181 0.95201 0.91534 0.82808 0.90753 0.91095 0.92289 0.76895 0.90339 0.88986 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.15 0.33 -2.07 16 2 C -0.08 -1.62 2.48 -90.62 -0.22 -1.84 16 3 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.18 8.41 -34.44 -0.29 -14.47 16 6 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.02 4.87 -3.82 -0.02 1.00 16 14 N -0.67 -9.46 5.68 -107.94 -0.61 -10.07 16 15 C 0.16 1.88 2.96 -68.86 -0.20 1.67 16 16 H 0.09 0.96 6.46 -51.93 -0.34 0.63 16 17 C -0.18 -1.76 9.14 37.16 0.34 -1.42 16 18 C 0.30 3.93 6.83 -155.70 -1.06 2.86 16 19 N -0.53 -7.57 11.18 -11.97 -0.13 -7.71 16 20 C 0.20 2.50 13.03 -91.81 -1.20 1.30 16 21 N -0.33 -4.42 12.70 29.29 0.37 -4.05 16 22 N -0.38 -4.61 4.04 -65.10 -0.26 -4.87 16 23 C 0.09 0.71 11.29 59.84 0.68 1.38 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.78 7.75 -51.92 -0.40 0.38 16 26 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 27 H 0.01 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.03 0.46 7.44 -51.93 -0.39 0.08 16 31 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 32 H 0.35 5.01 8.47 -39.29 -0.33 4.67 16 33 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 34 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.21 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.56 6.97 -51.93 -0.36 0.20 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -32.69 323.64 -8.21 -40.90 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.29 Total: -0.15 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.87 Total: -9.55 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.10 Total: -52.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.69 -8.21 -40.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602648224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.789 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds