Wall clock time and date at job start Sun Mar 29 2020 23:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 5 5 C 1.50708 * 109.47042 * 65.00504 * 4 2 1 6 6 H 1.08004 * 119.99423 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47520 * 119.99783 * 9 7 5 12 12 H 1.48505 * 109.46905 * 239.99703 * 9 7 5 13 13 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 14 14 N 1.46901 * 109.46916 * 294.99594 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47224 * 325.00460 * 15 14 13 17 17 C 1.53002 * 109.47102 * 85.00132 * 15 14 13 18 18 C 1.50702 * 109.47206 * 205.00135 * 15 14 13 19 19 N 1.30835 * 125.95922 * 315.02888 * 18 15 14 20 20 C 1.33242 * 109.82855 * 180.02562 * 19 18 15 21 21 N 1.30715 * 108.94205 * 359.97438 * 20 19 18 22 22 N 1.34424 * 125.95896 * 134.71669 * 18 15 14 23 23 C 1.46493 * 126.82633 * 0.02562 * 22 18 15 24 24 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 26 26 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 27 27 H 1.09008 * 109.47139 * 185.00096 * 4 2 1 28 28 H 1.09001 * 109.47414 * 305.00040 * 4 2 1 29 29 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46889 * 174.99975 * 13 2 1 31 31 H 1.08995 * 109.47384 * 54.99615 * 13 2 1 32 32 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 33 33 H 1.08996 * 109.46950 * 299.99914 * 17 15 14 34 34 H 1.09003 * 109.46813 * 60.00077 * 17 15 14 35 35 H 1.08999 * 109.47105 * 180.02562 * 17 15 14 36 36 H 1.07994 * 125.52813 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.47246 * 90.00412 * 23 22 18 38 38 H 1.09004 * 109.47463 * 209.99796 * 23 22 18 39 39 H 1.08998 * 109.47614 * 330.00178 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 2.6753 -1.5195 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 0.7424 1.7743 -4.8434 11 1 2.7170 0.9664 -5.9965 12 1 0.6440 -0.2859 -6.1184 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1257 -0.6265 3.6672 16 1 2.0823 -1.7074 3.5335 17 6 3.5692 -0.2049 3.9491 18 6 1.2504 -0.2283 4.8276 19 7 0.8444 0.9846 5.1030 20 6 0.0874 0.9698 6.1994 21 7 0.0005 -0.2584 6.6385 22 7 0.7458 -1.0583 5.7569 23 6 0.9387 -2.5082 5.8368 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.1263 -0.7996 -1.2055 28 1 1.6053 -1.7199 -1.2950 29 1 2.9226 -1.8425 -4.7317 30 1 3.1262 -0.7995 1.2056 31 1 1.6052 -1.7198 1.2953 32 1 1.9882 0.9873 2.3966 33 1 4.2022 -0.4929 3.1098 34 1 3.6125 0.8760 4.0828 35 1 3.9213 -0.6979 4.8552 36 1 -0.3793 1.8324 6.6515 37 1 1.8218 -2.7248 6.4381 38 1 0.0638 -2.9663 6.2983 39 1 1.0741 -2.9127 4.8338 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602648224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:25 Heat of formation + Delta-G solvation = 52.295320 kcal Electronic energy + Delta-G solvation = -18432.650081 eV Core-core repulsion = 15603.763129 eV Total energy + Delta-G solvation = -2828.886952 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.04231 -38.75704 -36.41585 -34.95330 -34.27359 -32.10802 -30.36366 -28.62524 -28.13891 -26.73318 -25.00290 -23.89233 -22.81314 -21.22823 -20.48631 -18.50921 -18.01774 -17.00046 -16.59282 -16.19619 -16.04695 -15.87853 -15.39670 -14.72182 -14.41457 -14.35926 -14.07576 -13.98567 -13.65525 -13.37346 -13.14785 -12.99377 -12.77011 -12.60186 -12.52128 -12.27080 -12.18981 -11.95284 -11.46803 -11.05871 -10.95664 -10.92708 -10.65117 -10.50516 -10.48280 -9.35182 -8.15163 -6.22970 0.63539 1.41002 1.41598 1.42495 1.54703 2.00954 2.44229 3.08444 3.18819 3.27046 3.67375 3.79745 4.06527 4.11543 4.21048 4.37938 4.38949 4.51247 4.55980 4.63881 4.73941 4.77862 4.92470 4.99840 5.05634 5.17495 5.30922 5.35220 5.49267 5.52837 5.53810 5.59805 5.81181 5.85592 5.93340 6.06891 6.35367 6.43289 6.93190 7.18239 7.45110 8.96827 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041345 B = 0.003814 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.072932 B = 7340.058280 C = 7532.319303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.080 3.920 14 N -0.676 5.676 15 C 0.164 3.836 16 H 0.113 0.887 17 C -0.168 4.168 18 C 0.292 3.708 19 N -0.558 5.558 20 C 0.189 3.811 21 N -0.352 5.352 22 N -0.383 5.383 23 C 0.083 3.917 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.034 0.966 27 H -0.008 1.008 28 H -0.007 1.007 29 H 0.261 0.739 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.351 0.649 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.241 0.759 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -0.699 19.697 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.049 4.049 14 N -0.308 5.308 15 C 0.051 3.949 16 H 0.131 0.869 17 C -0.228 4.228 18 C 0.014 3.986 19 N -0.286 5.286 20 C -0.113 4.113 21 N -0.180 5.180 22 N -0.174 5.174 23 C -0.058 4.058 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.010 0.990 28 H 0.011 0.989 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.257 0.743 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.444 -1.118 20.082 20.165 hybrid contribution 0.764 0.334 -1.142 1.413 sum -0.680 -0.785 18.940 18.969 Atomic orbital electron populations 1.21475 0.95252 1.00233 1.00073 1.21002 0.96245 0.98613 0.93440 0.92881 1.19009 0.94415 0.94661 0.92343 1.21685 1.34161 1.08491 0.92239 0.92423 1.25872 0.95356 0.96067 1.02414 1.70086 1.40400 1.22837 1.24135 0.85527 0.78061 0.78937 0.79315 1.18842 1.20520 1.20649 1.21925 0.97610 0.97113 0.88224 1.60235 1.64245 1.06296 1.00044 1.20003 0.90174 0.99963 0.84734 0.86926 1.22372 0.94360 1.02641 1.03402 1.24509 0.95433 0.85991 0.92651 1.70424 1.18559 1.22099 1.17500 1.26547 0.96764 0.96020 0.91999 1.77941 1.18610 1.04345 1.17117 1.50491 1.36955 1.10023 1.19909 1.22326 1.05024 0.72599 1.05810 0.94502 0.92247 0.94641 0.98963 0.98886 0.92988 0.94695 0.91225 0.82927 0.90470 0.92007 0.90697 0.74272 0.88264 0.88305 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.33 8.89 71.98 0.64 -3.69 16 2 C -0.07 -2.91 2.48 -10.80 -0.03 -2.94 16 3 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -29.48 8.41 25.60 0.22 -29.27 16 6 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 9 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.08 2.45 4.87 86.30 0.42 2.87 16 14 N -0.68 -17.99 5.68 -495.42 -2.81 -20.80 16 15 C 0.16 3.47 2.96 44.17 0.13 3.60 16 16 H 0.11 1.96 6.46 -2.39 -0.02 1.95 16 17 C -0.17 -3.02 9.14 71.98 0.66 -2.36 16 18 C 0.29 7.11 6.83 138.23 0.94 8.05 16 19 N -0.56 -15.32 11.18 -191.78 -2.14 -17.46 16 20 C 0.19 4.58 13.03 180.76 2.36 6.93 16 21 N -0.35 -8.93 12.70 -61.25 -0.78 -9.71 16 22 N -0.38 -8.51 4.04 -359.88 -1.45 -9.97 16 23 C 0.08 1.04 11.29 127.77 1.44 2.48 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 2.07 7.75 -2.38 -0.02 2.05 16 26 H 0.03 1.46 6.95 -2.39 -0.02 1.44 16 27 H -0.01 -0.44 8.14 -2.38 -0.02 -0.45 16 28 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.03 1.04 7.44 -2.39 -0.02 1.02 16 31 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 32 H 0.35 9.54 8.47 -89.69 -0.76 8.78 16 33 H 0.08 1.36 7.45 -2.39 -0.02 1.34 16 34 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.24 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 1.01 6.97 -2.39 -0.02 0.99 16 Total: -1.00 -69.77 323.64 2.77 -67.00 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.27 Total: 12.46 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 7.37 Total: -12.02 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -6.90 Total: -113.78 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.77 2.77 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602648224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.300 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds