Wall clock time and date at job start Sun Mar 29 2020 23:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46739 * 2 1 4 4 C 1.52999 * 109.47128 * 119.99927 * 2 1 3 5 5 C 1.50700 * 109.46860 * 295.00115 * 4 2 1 6 6 H 1.08000 * 120.00417 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99767 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99765 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00005 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46932 * 90.00271 * 9 7 5 11 11 H 1.48494 * 109.47211 * 210.00016 * 9 7 5 12 12 H 1.48504 * 109.47222 * 330.00323 * 9 7 5 13 13 C 1.52998 * 109.46983 * 240.00075 * 2 1 3 14 14 N 1.46900 * 109.47034 * 64.99967 * 13 2 1 15 15 C 1.46903 * 111.00153 * 66.04747 * 14 13 2 16 16 C 1.46910 * 110.99900 * 189.99562 * 14 13 2 17 17 C 1.50693 * 109.46977 * 169.99822 * 16 14 13 18 18 N 1.30520 * 126.34765 * 269.95705 * 17 16 14 19 19 N 1.28595 * 109.67181 * 180.02562 * 18 17 16 20 20 C 1.30528 * 109.67405 * 0.02562 * 19 18 17 21 21 N 1.35492 * 107.30462 * 359.97438 * 20 19 18 22 22 C 1.46500 * 126.97538 * 180.26181 * 21 20 19 23 23 H 1.08998 * 109.47252 * 300.00097 * 1 2 3 24 24 H 1.09006 * 109.47484 * 59.99833 * 1 2 3 25 25 H 1.09000 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47110 * 55.00155 * 4 2 1 27 27 H 1.09003 * 109.47021 * 175.00452 * 4 2 1 28 28 H 0.97001 * 119.99922 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47472 * 304.99554 * 13 2 1 30 30 H 1.09005 * 109.46933 * 184.99611 * 13 2 1 31 31 H 1.08998 * 109.46970 * 183.95361 * 15 14 13 32 32 H 1.08996 * 109.46512 * 303.95082 * 15 14 13 33 33 H 1.08999 * 109.47036 * 63.94827 * 15 14 13 34 34 H 1.09005 * 109.46637 * 49.99826 * 16 14 13 35 35 H 1.09000 * 109.47028 * 290.00293 * 16 14 13 36 36 H 1.07996 * 126.34178 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.47396 * 269.68188 * 22 21 20 38 38 H 1.08996 * 109.47334 * 29.68564 * 22 21 20 39 39 H 1.09003 * 109.46770 * 149.68395 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4765 6 1 1.0806 0.9746 2.3756 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5192 3.8512 9 14 1.4987 0.5629 5.2496 10 1 0.1711 0.0956 5.7231 11 1 2.5077 0.3521 6.3185 12 1 1.4249 2.0082 4.9166 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0375 -2.4456 15 6 2.3340 1.3375 -2.4894 16 6 1.9124 -0.7357 -3.6672 17 6 1.2829 -0.0397 -4.8463 18 7 0.0727 -0.2254 -5.2984 19 7 -0.1303 0.5337 -6.3164 20 6 0.9414 1.2378 -6.5602 21 7 1.8688 0.8941 -5.6341 22 6 3.2270 1.4282 -5.5068 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6054 -1.7197 1.2951 27 1 3.1263 -0.7994 1.2056 28 1 2.9221 -1.8425 4.7318 29 1 1.6054 -1.7197 -1.2952 30 1 3.1263 -0.7994 -1.2056 31 1 1.9759 1.9072 -3.3469 32 1 2.1239 1.8892 -1.5732 33 1 3.4088 1.1805 -2.5807 34 1 1.4857 -1.7334 -3.5638 35 1 2.9882 -0.8151 -3.8239 36 1 1.0655 1.9608 -7.3527 37 1 3.9136 0.8187 -6.0941 38 1 3.2493 2.4550 -5.8719 39 1 3.5284 1.4084 -4.4595 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602662241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:54 Heat of formation + Delta-G solvation = 78.986663 kcal Electronic energy + Delta-G solvation = -18695.704509 eV Core-core repulsion = 15867.974980 eV Total energy + Delta-G solvation = -2827.729529 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.20626 -38.06694 -35.32054 -34.41441 -32.20390 -30.96612 -28.30944 -27.19246 -27.13483 -26.30793 -23.87326 -22.44370 -21.98167 -20.43452 -18.93778 -17.29583 -16.85742 -16.31634 -15.61785 -15.10362 -15.01822 -14.80516 -14.33797 -13.82735 -13.65222 -13.20383 -13.02746 -12.52359 -12.40702 -11.90775 -11.65401 -11.51749 -11.37996 -11.30324 -10.83010 -10.76297 -10.42112 -10.34379 -10.29898 -10.27937 -9.63041 -9.39862 -9.12009 -8.97588 -8.33300 -8.21172 -5.98428 -3.99364 1.65849 2.30403 2.82579 3.33038 3.39392 3.42363 4.00930 4.20023 4.32812 4.42207 4.48193 4.65635 4.79520 4.94100 5.17519 5.31317 5.35816 5.37894 5.50256 5.62296 5.72389 5.86901 5.94437 6.03360 6.13274 6.37125 6.49262 6.66712 6.69347 6.96560 7.04950 7.15843 7.26121 7.32118 7.67693 7.83782 8.01673 8.45740 8.69121 9.06886 9.64138 11.13122 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.046577 B = 0.003909 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.014909 B = 7161.246720 C = 7248.322337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.062 3.938 14 N -0.530 5.530 15 C 0.016 3.984 16 C 0.138 3.862 17 C 0.194 3.806 18 N -0.279 5.279 19 N -0.299 5.299 20 C 0.142 3.858 21 N -0.477 5.477 22 C 0.061 3.939 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.017 0.983 27 H 0.012 0.988 28 H 0.259 0.741 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.216 0.784 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 5.783 -19.111 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.254 5.254 15 C -0.132 4.132 16 C 0.008 3.992 17 C -0.074 4.074 18 N -0.119 5.119 19 N -0.138 5.138 20 C -0.145 4.145 21 N -0.169 5.169 22 C -0.082 4.082 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.043 0.957 34 H 0.128 0.872 35 H 0.068 0.932 36 H 0.232 0.768 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.283 5.210 -19.089 19.918 hybrid contribution 2.070 1.015 0.863 2.462 sum 4.353 6.225 -18.225 19.745 Atomic orbital electron populations 1.21590 0.95523 1.00774 1.00234 1.21240 0.96185 0.98972 0.93498 0.92591 1.19128 0.95841 0.95671 0.90377 1.21226 1.34589 1.08300 0.90956 0.92587 1.25011 0.95303 0.95098 0.99076 1.69961 1.39089 1.21257 1.23375 0.86636 0.78269 0.80418 0.82939 1.20671 1.21339 1.19939 1.22398 0.97773 0.97490 0.88825 1.61952 1.58494 1.03863 1.01127 1.22635 0.95231 0.92119 1.03181 1.20424 0.96999 0.97052 0.84721 1.24798 0.91822 0.93839 0.96969 1.74295 1.12115 1.19165 1.06353 1.74277 1.21707 1.06902 1.10941 1.26381 0.86603 1.04047 0.97513 1.46246 1.14352 1.31887 1.24430 1.22329 0.79707 1.00636 1.05490 0.92782 0.93874 0.93991 0.96443 0.96959 0.93097 0.90657 0.94902 0.92601 0.89794 0.95669 0.87166 0.93196 0.76783 0.89990 0.88865 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.08 -1.59 2.26 -90.62 -0.20 -1.80 16 3 H 0.06 1.12 6.26 -51.93 -0.33 0.79 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.19 8.41 -34.44 -0.29 -14.48 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.06 1.00 4.35 -3.82 -0.02 0.99 16 14 N -0.53 -7.55 4.21 -244.37 -1.03 -8.58 16 15 C 0.02 0.20 7.80 60.07 0.47 0.67 16 16 C 0.14 1.68 5.20 -4.97 -0.03 1.65 16 17 C 0.19 2.53 6.65 -154.99 -1.03 1.50 16 18 N -0.28 -4.55 12.21 32.79 0.40 -4.15 16 19 N -0.30 -4.47 12.21 29.69 0.36 -4.11 16 20 C 0.14 1.46 12.74 -89.94 -1.15 0.31 16 21 N -0.48 -4.67 2.78 -122.69 -0.34 -5.01 16 22 C 0.06 0.33 10.16 59.85 0.61 0.93 16 23 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 24 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.07 1.23 7.93 -51.93 -0.41 0.81 16 30 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.06 0.64 5.83 -51.93 -0.30 0.34 16 32 H 0.08 1.16 6.21 -51.93 -0.32 0.84 16 33 H 0.02 0.27 7.16 -51.93 -0.37 -0.11 16 34 H 0.11 1.35 7.93 -51.93 -0.41 0.94 16 35 H 0.05 0.49 7.85 -51.93 -0.41 0.08 16 36 H 0.22 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.10 0.56 4.68 -51.93 -0.24 0.32 16 LS Contribution 312.73 15.07 4.71 4.71 Total: -1.00 -33.87 312.73 -7.73 -41.60 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -6.02 Total: -4.76 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.53 Total: -10.29 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.13 Total: -47.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.87 -7.73 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602662241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.582 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds