Wall clock time and date at job start Sun Mar 29 2020 23:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46739 * 2 1 4 4 C 1.52999 * 109.47128 * 119.99927 * 2 1 3 5 5 C 1.50700 * 109.46860 * 295.00115 * 4 2 1 6 6 H 1.08000 * 120.00417 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99767 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99765 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00005 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46932 * 90.00271 * 9 7 5 11 11 H 1.48494 * 109.47211 * 210.00016 * 9 7 5 12 12 H 1.48504 * 109.47222 * 330.00323 * 9 7 5 13 13 C 1.52998 * 109.46983 * 240.00075 * 2 1 3 14 14 N 1.46900 * 109.47034 * 64.99967 * 13 2 1 15 15 C 1.46903 * 111.00153 * 66.04747 * 14 13 2 16 16 C 1.46910 * 110.99900 * 189.99562 * 14 13 2 17 17 C 1.50693 * 109.46977 * 169.99822 * 16 14 13 18 18 N 1.30520 * 126.34765 * 269.95705 * 17 16 14 19 19 N 1.28595 * 109.67181 * 180.02562 * 18 17 16 20 20 C 1.30528 * 109.67405 * 0.02562 * 19 18 17 21 21 N 1.35492 * 107.30462 * 359.97438 * 20 19 18 22 22 C 1.46500 * 126.97538 * 180.26181 * 21 20 19 23 23 H 1.08998 * 109.47252 * 300.00097 * 1 2 3 24 24 H 1.09006 * 109.47484 * 59.99833 * 1 2 3 25 25 H 1.09000 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47110 * 55.00155 * 4 2 1 27 27 H 1.09003 * 109.47021 * 175.00452 * 4 2 1 28 28 H 0.97001 * 119.99922 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47472 * 304.99554 * 13 2 1 30 30 H 1.09005 * 109.46933 * 184.99611 * 13 2 1 31 31 H 1.08998 * 109.46970 * 183.95361 * 15 14 13 32 32 H 1.08996 * 109.46512 * 303.95082 * 15 14 13 33 33 H 1.08999 * 109.47036 * 63.94827 * 15 14 13 34 34 H 1.09005 * 109.46637 * 49.99826 * 16 14 13 35 35 H 1.09000 * 109.47028 * 290.00293 * 16 14 13 36 36 H 1.07996 * 126.34178 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.47396 * 269.68188 * 22 21 20 38 38 H 1.08996 * 109.47334 * 29.68564 * 22 21 20 39 39 H 1.09003 * 109.46770 * 149.68395 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4765 6 1 1.0806 0.9746 2.3756 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5192 3.8512 9 14 1.4987 0.5629 5.2496 10 1 0.1711 0.0956 5.7231 11 1 2.5077 0.3521 6.3185 12 1 1.4249 2.0082 4.9166 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0375 -2.4456 15 6 2.3340 1.3375 -2.4894 16 6 1.9124 -0.7357 -3.6672 17 6 1.2829 -0.0397 -4.8463 18 7 0.0727 -0.2254 -5.2984 19 7 -0.1303 0.5337 -6.3164 20 6 0.9414 1.2378 -6.5602 21 7 1.8688 0.8941 -5.6341 22 6 3.2270 1.4282 -5.5068 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6054 -1.7197 1.2951 27 1 3.1263 -0.7994 1.2056 28 1 2.9221 -1.8425 4.7318 29 1 1.6054 -1.7197 -1.2952 30 1 3.1263 -0.7994 -1.2056 31 1 1.9759 1.9072 -3.3469 32 1 2.1239 1.8892 -1.5732 33 1 3.4088 1.1805 -2.5807 34 1 1.4857 -1.7334 -3.5638 35 1 2.9882 -0.8151 -3.8239 36 1 1.0655 1.9608 -7.3527 37 1 3.9136 0.8187 -6.0941 38 1 3.2493 2.4550 -5.8719 39 1 3.5284 1.4084 -4.4595 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602662241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:54 Heat of formation + Delta-G solvation = 57.691236 kcal Electronic energy + Delta-G solvation = -18696.627948 eV Core-core repulsion = 15867.974980 eV Total energy + Delta-G solvation = -2828.652968 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.07488 -39.29332 -36.47996 -35.70623 -34.10322 -32.05891 -29.06821 -29.01851 -27.94976 -27.70733 -25.55220 -23.48681 -23.24302 -21.35106 -20.52407 -18.52163 -18.01788 -17.63827 -16.67052 -16.49325 -16.19362 -15.93044 -15.72315 -15.07830 -14.47134 -14.34901 -14.21377 -13.97016 -13.55232 -13.31205 -13.17170 -12.79875 -12.72626 -12.56697 -12.50995 -12.46740 -12.20539 -12.00290 -11.36731 -11.28805 -11.07720 -11.04861 -10.94498 -10.50833 -10.28797 -9.29361 -8.15877 -6.24119 0.83853 1.41115 1.42094 1.52479 1.62460 1.89117 2.43285 2.97956 3.17971 3.33334 3.72475 3.88375 3.96648 4.09262 4.19966 4.35629 4.36220 4.47470 4.52483 4.53944 4.65308 4.72012 4.86628 4.89177 4.94099 4.97542 5.07576 5.19441 5.29846 5.47421 5.51026 5.56726 5.81298 5.91189 5.93863 6.03315 6.07396 6.33713 6.91740 7.43916 7.78665 8.96022 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.046577 B = 0.003909 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.014909 B = 7161.246720 C = 7248.322337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 H 0.057 0.943 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.075 3.925 14 N -0.544 5.544 15 C 0.019 3.981 16 C 0.142 3.858 17 C 0.186 3.814 18 N -0.331 5.331 19 N -0.353 5.353 20 C 0.163 3.837 21 N -0.471 5.471 22 C 0.054 3.946 23 H 0.036 0.964 24 H 0.056 0.944 25 H 0.035 0.965 26 H -0.009 1.009 27 H -0.008 1.008 28 H 0.262 0.738 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.262 0.738 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 7.580 -20.311 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.052 4.052 14 N -0.269 5.269 15 C -0.128 4.128 16 C 0.013 3.987 17 C -0.083 4.083 18 N -0.171 5.171 19 N -0.191 5.191 20 C -0.126 4.126 21 N -0.162 5.162 22 C -0.087 4.087 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.009 0.991 27 H 0.011 0.989 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.278 0.722 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.320 7.025 -20.306 21.741 hybrid contribution 1.801 0.492 1.153 2.195 sum 5.121 7.516 -19.152 21.202 Atomic orbital electron populations 1.21472 0.95396 1.00287 0.99927 1.21030 0.96098 0.98731 0.93092 0.92422 1.19004 0.94383 0.94642 0.92381 1.21633 1.34296 1.08530 0.92180 0.92390 1.25887 0.95290 0.96075 1.02442 1.70086 1.40297 1.22867 1.24217 0.85568 0.77945 0.79352 0.78925 1.20182 1.20844 1.18826 1.22067 0.97849 0.96945 0.88340 1.61794 1.59480 1.04564 1.01078 1.22633 0.96568 0.90935 1.02712 1.20398 0.98557 0.96272 0.83509 1.24767 0.91481 0.94670 0.97408 1.74175 1.14255 1.20954 1.07753 1.74161 1.24391 1.08776 1.11817 1.27226 0.85224 1.02758 0.97347 1.46457 1.15678 1.30725 1.23320 1.22690 0.77524 1.02592 1.05912 0.94501 0.92547 0.94565 0.99093 0.98944 0.92962 0.91040 0.94287 0.91511 0.91583 0.93371 0.87909 0.90314 0.72199 0.87983 0.85924 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.51 8.89 71.98 0.64 -3.87 16 2 C -0.07 -2.82 2.26 -10.80 -0.02 -2.84 16 3 H 0.06 2.29 6.26 -2.39 -0.01 2.27 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.60 8.41 25.60 0.22 -29.38 16 6 H 0.06 3.16 7.06 -2.91 -0.02 3.14 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 9 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 13 C 0.08 2.40 4.35 86.30 0.38 2.78 16 14 N -0.54 -14.76 4.21 -927.03 -3.90 -18.66 16 15 C 0.02 0.43 7.80 127.69 1.00 1.43 16 16 C 0.14 3.24 5.20 85.55 0.44 3.68 16 17 C 0.19 4.60 6.65 137.98 0.92 5.52 16 18 N -0.33 -10.76 12.21 -50.16 -0.61 -11.37 16 19 N -0.35 -10.29 12.21 -59.99 -0.73 -11.02 16 20 C 0.16 2.90 12.74 180.11 2.30 5.20 16 21 N -0.47 -7.83 2.78 -542.09 -1.51 -9.33 16 22 C 0.05 0.34 10.16 127.77 1.30 1.64 16 23 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 24 H 0.06 2.07 7.75 -2.38 -0.02 2.05 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 30 H 0.04 1.19 8.12 -2.38 -0.02 1.17 16 31 H 0.07 1.35 5.83 -2.39 -0.01 1.34 16 32 H 0.07 1.73 6.21 -2.39 -0.01 1.71 16 33 H 0.05 0.86 7.16 -2.39 -0.02 0.85 16 34 H 0.10 2.47 7.93 -2.38 -0.02 2.45 16 35 H 0.08 1.33 7.85 -2.39 -0.02 1.31 16 36 H 0.26 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.09 0.71 4.68 -2.39 -0.01 0.70 16 Total: -1.00 -75.52 312.73 4.34 -71.18 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.03 Total: 2.54 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 7.75 Total: -13.51 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -6.47 Total: -106.57 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -75.52 4.34 -71.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602662241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.874 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds