Wall clock time and date at job start Sun Mar 29 2020 23:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47194 * 2 1 4 4 C 1.53002 * 109.46942 * 239.99868 * 2 1 3 5 5 C 1.50689 * 109.47299 * 65.00510 * 4 2 1 6 6 H 1.08004 * 120.00214 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00022 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00275 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00002 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47545 * 89.99658 * 9 7 5 11 11 H 1.48507 * 109.46926 * 209.99413 * 9 7 5 12 12 H 1.48499 * 109.46992 * 329.98853 * 9 7 5 13 13 C 1.53000 * 109.46976 * 120.00137 * 2 1 3 14 14 N 1.46901 * 109.47174 * 185.08276 * 13 2 1 15 15 C 1.46896 * 111.00115 * 75.28527 * 14 13 2 16 16 C 1.46904 * 110.99501 * 199.24273 * 14 13 2 17 17 C 1.50704 * 109.46732 * 169.99722 * 16 14 13 18 18 N 1.30524 * 126.34386 * 269.68889 * 17 16 14 19 19 N 1.28596 * 109.66721 * 179.82628 * 18 17 16 20 20 C 1.30510 * 109.67808 * 0.44450 * 19 18 17 21 21 N 1.35496 * 107.30972 * 359.73091 * 20 19 18 22 22 C 1.46494 * 126.98697 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47528 * 294.57811 * 1 2 3 24 24 H 1.08995 * 109.47498 * 174.57071 * 1 2 3 25 25 H 1.09003 * 109.46815 * 54.57193 * 1 2 3 26 26 H 1.09005 * 109.46492 * 185.00345 * 4 2 1 27 27 H 1.09002 * 109.46923 * 304.99528 * 4 2 1 28 28 H 0.96998 * 120.00142 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46689 * 305.07697 * 13 2 1 30 30 H 1.08995 * 109.47209 * 65.07545 * 13 2 1 31 31 H 1.08995 * 109.47403 * 62.73075 * 15 14 13 32 32 H 1.09004 * 109.46514 * 182.73055 * 15 14 13 33 33 H 1.08994 * 109.47167 * 302.72517 * 15 14 13 34 34 H 1.08995 * 109.46755 * 289.99346 * 16 14 13 35 35 H 1.08998 * 109.47672 * 49.99617 * 16 14 13 36 36 H 1.08000 * 126.35180 * 179.73453 * 20 19 18 37 37 H 1.08998 * 109.47434 * 270.00232 * 22 21 20 38 38 H 1.09001 * 109.46987 * 30.00522 * 22 21 20 39 39 H 1.09000 * 109.47228 * 149.99861 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9742 -2.3757 7 6 1.9924 -0.4024 -3.7282 8 7 2.6755 -1.5195 -3.8511 9 14 1.4990 0.5628 -5.2496 10 1 2.5650 1.5414 -5.5824 11 1 1.3112 -0.3711 -6.3889 12 1 0.2282 1.2850 -4.9871 13 6 2.0399 -0.7213 1.2492 14 7 3.5038 -0.6160 1.3122 15 6 3.9172 0.7294 1.7329 16 6 4.0676 -1.6418 2.1999 17 6 5.5672 -1.6649 2.0519 18 7 6.2504 -2.3934 1.2116 19 7 7.5063 -2.1580 1.3564 20 6 7.6820 -1.2758 2.3020 21 7 6.4564 -0.9375 2.7705 22 6 6.1540 0.0196 3.8375 23 1 -0.3634 0.4274 0.9345 24 1 -0.3634 -1.0230 -0.0972 25 1 -0.3633 0.5957 -0.8374 26 1 3.1263 -0.7995 -1.2055 27 1 1.6053 -1.7199 -1.2951 28 1 2.9227 -1.8424 -4.7317 29 1 1.6042 -0.2626 2.1369 30 1 1.7527 -1.7718 1.2049 31 1 3.5495 0.9241 2.7403 32 1 5.0053 0.7943 1.7244 33 1 3.5038 1.4679 1.0461 34 1 3.8080 -1.4107 3.2329 35 1 3.6611 -2.6171 1.9324 36 1 8.6287 -0.8872 2.6472 37 1 6.1356 -0.4988 4.7961 38 1 6.9200 0.7947 3.8581 39 1 5.1812 0.4751 3.6521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602662242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:57 Heat of formation + Delta-G solvation = 82.799762 kcal Electronic energy + Delta-G solvation = -18975.597419 eV Core-core repulsion = 16148.033239 eV Total energy + Delta-G solvation = -2827.564180 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.01869 -37.93673 -35.18344 -34.29370 -32.07603 -30.87524 -28.16664 -27.11737 -26.97441 -26.39532 -23.36756 -22.28204 -22.15072 -20.32139 -18.87122 -17.15504 -16.70473 -16.20486 -15.47757 -15.02181 -14.96227 -14.62824 -14.29707 -13.64985 -13.41733 -13.16862 -12.91329 -12.49138 -12.28481 -11.81509 -11.62794 -11.35118 -11.31265 -11.25863 -10.82380 -10.79660 -10.32845 -10.21629 -10.15726 -10.14347 -9.62272 -9.16064 -9.02735 -8.80630 -8.18434 -7.97466 -5.80219 -3.81715 1.83329 2.45863 3.03942 3.41464 3.47723 3.49740 4.14835 4.32031 4.44547 4.57135 4.59643 4.74137 4.90654 5.00821 5.29160 5.35447 5.44309 5.54518 5.61876 5.69214 5.78575 5.95694 6.00060 6.07776 6.22233 6.25860 6.33779 6.47693 6.84888 6.96008 7.00826 7.24307 7.30010 7.43073 7.91528 8.13414 8.29379 8.63382 8.90521 9.26474 9.80202 11.30595 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.005502 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.500084 B = 5087.956626 C = 5802.864219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.035 3.965 5 C -0.516 4.516 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.890 5.890 9 Si 0.884 3.116 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.066 3.934 14 N -0.521 5.521 15 C 0.022 3.978 16 C 0.142 3.858 17 C 0.192 3.808 18 N -0.270 5.270 19 N -0.296 5.296 20 C 0.140 3.860 21 N -0.480 5.480 22 C 0.064 3.936 23 H 0.027 0.973 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.010 0.990 28 H 0.258 0.742 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.111 0.889 36 H 0.215 0.785 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 4.365 19.611 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.002 4.002 5 C -0.554 4.554 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.530 5.530 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.061 4.061 14 N -0.245 5.245 15 C -0.127 4.127 16 C 0.012 3.988 17 C -0.076 4.076 18 N -0.109 5.109 19 N -0.136 5.136 20 C -0.147 4.147 21 N -0.172 5.172 22 C -0.079 4.079 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.129 0.871 36 H 0.232 0.768 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.140 3.169 17.918 18.908 hybrid contribution -0.600 1.752 0.919 2.068 sum 4.540 4.921 18.837 19.991 Atomic orbital electron populations 1.21694 0.96299 1.01358 0.99567 1.21217 0.94169 0.99183 0.95534 0.92700 1.19059 0.97588 0.94460 0.89140 1.21274 1.34562 1.08162 0.91409 0.93122 1.24997 0.95516 0.95055 0.98834 1.69983 1.38847 1.21052 1.23107 0.86736 0.78713 0.79914 0.83426 1.20921 1.21387 1.20113 1.22337 0.84292 1.01534 0.97919 1.61747 1.11331 1.02162 1.49249 1.22597 1.00410 0.91601 0.98050 1.20411 0.84088 0.99269 0.95045 1.24783 0.95358 0.94232 0.93202 1.74374 0.97510 1.20939 1.18127 1.74301 1.10216 1.14316 1.14743 1.26367 0.90253 1.00427 0.97681 1.46241 1.07290 1.33723 1.29972 1.22269 1.04581 0.92168 0.88919 0.95404 0.93389 0.91969 0.94776 0.97192 0.93215 0.95831 0.90893 0.96204 0.92409 0.90082 0.93630 0.87126 0.76848 0.90189 0.88993 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.91 37.16 0.33 -2.07 16 2 C -0.08 -1.65 2.39 -90.62 -0.22 -1.86 16 3 H 0.05 1.12 6.71 -51.93 -0.35 0.77 16 4 C 0.03 0.91 4.39 -27.89 -0.12 0.78 16 5 C -0.52 -14.81 8.48 -34.45 -0.29 -15.10 16 6 H 0.05 1.41 7.06 -52.48 -0.37 1.04 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -28.08 13.29 55.43 0.74 -27.34 16 9 Si 0.88 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.07 1.07 4.39 -3.82 -0.02 1.06 16 14 N -0.52 -8.47 4.06 -244.37 -0.99 -9.46 16 15 C 0.02 0.29 7.83 60.06 0.47 0.76 16 16 C 0.14 1.96 5.18 -4.97 -0.03 1.94 16 17 C 0.19 2.95 6.65 -154.98 -1.03 1.92 16 18 N -0.27 -5.24 12.21 32.80 0.40 -4.84 16 19 N -0.30 -5.24 12.21 29.69 0.36 -4.87 16 20 C 0.14 1.72 12.74 -89.95 -1.15 0.58 16 21 N -0.48 -5.52 2.77 -122.69 -0.34 -5.86 16 22 C 0.06 0.40 10.14 59.84 0.61 1.01 16 23 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.23 7.12 -51.93 -0.37 0.86 16 26 H 0.03 1.00 7.62 -51.93 -0.40 0.60 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 29 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 30 H 0.07 1.19 7.74 -51.93 -0.40 0.79 16 31 H 0.02 0.21 7.23 -51.93 -0.38 -0.17 16 32 H 0.06 0.76 5.73 -51.93 -0.30 0.47 16 33 H 0.08 1.21 6.70 -51.93 -0.35 0.86 16 34 H 0.05 0.48 7.83 -51.93 -0.41 0.07 16 35 H 0.11 1.58 7.83 -51.93 -0.41 1.17 16 36 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.61 4.73 -51.93 -0.25 0.36 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -36.50 313.34 -7.72 -44.22 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -6.05 Total: -4.55 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -1.54 Total: -9.40 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.17 Total: -52.37 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.50 -7.72 -44.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602662242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.023 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds