Wall clock time and date at job start Sun Mar 29 2020 23:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47194 * 2 1 4 4 C 1.53002 * 109.46942 * 239.99868 * 2 1 3 5 5 C 1.50689 * 109.47299 * 65.00510 * 4 2 1 6 6 H 1.08004 * 120.00214 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00022 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00275 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00002 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47545 * 89.99658 * 9 7 5 11 11 H 1.48507 * 109.46926 * 209.99413 * 9 7 5 12 12 H 1.48499 * 109.46992 * 329.98853 * 9 7 5 13 13 C 1.53000 * 109.46976 * 120.00137 * 2 1 3 14 14 N 1.46901 * 109.47174 * 185.08276 * 13 2 1 15 15 C 1.46896 * 111.00115 * 75.28527 * 14 13 2 16 16 C 1.46904 * 110.99501 * 199.24273 * 14 13 2 17 17 C 1.50704 * 109.46732 * 169.99722 * 16 14 13 18 18 N 1.30524 * 126.34386 * 269.68889 * 17 16 14 19 19 N 1.28596 * 109.66721 * 179.82628 * 18 17 16 20 20 C 1.30510 * 109.67808 * 0.44450 * 19 18 17 21 21 N 1.35496 * 107.30972 * 359.73091 * 20 19 18 22 22 C 1.46494 * 126.98697 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47528 * 294.57811 * 1 2 3 24 24 H 1.08995 * 109.47498 * 174.57071 * 1 2 3 25 25 H 1.09003 * 109.46815 * 54.57193 * 1 2 3 26 26 H 1.09005 * 109.46492 * 185.00345 * 4 2 1 27 27 H 1.09002 * 109.46923 * 304.99528 * 4 2 1 28 28 H 0.96998 * 120.00142 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46689 * 305.07697 * 13 2 1 30 30 H 1.08995 * 109.47209 * 65.07545 * 13 2 1 31 31 H 1.08995 * 109.47403 * 62.73075 * 15 14 13 32 32 H 1.09004 * 109.46514 * 182.73055 * 15 14 13 33 33 H 1.08994 * 109.47167 * 302.72517 * 15 14 13 34 34 H 1.08995 * 109.46755 * 289.99346 * 16 14 13 35 35 H 1.08998 * 109.47672 * 49.99617 * 16 14 13 36 36 H 1.08000 * 126.35180 * 179.73453 * 20 19 18 37 37 H 1.08998 * 109.47434 * 270.00232 * 22 21 20 38 38 H 1.09001 * 109.46987 * 30.00522 * 22 21 20 39 39 H 1.09000 * 109.47228 * 149.99861 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9742 -2.3757 7 6 1.9924 -0.4024 -3.7282 8 7 2.6755 -1.5195 -3.8511 9 14 1.4990 0.5628 -5.2496 10 1 2.5650 1.5414 -5.5824 11 1 1.3112 -0.3711 -6.3889 12 1 0.2282 1.2850 -4.9871 13 6 2.0399 -0.7213 1.2492 14 7 3.5038 -0.6160 1.3122 15 6 3.9172 0.7294 1.7329 16 6 4.0676 -1.6418 2.1999 17 6 5.5672 -1.6649 2.0519 18 7 6.2504 -2.3934 1.2116 19 7 7.5063 -2.1580 1.3564 20 6 7.6820 -1.2758 2.3020 21 7 6.4564 -0.9375 2.7705 22 6 6.1540 0.0196 3.8375 23 1 -0.3634 0.4274 0.9345 24 1 -0.3634 -1.0230 -0.0972 25 1 -0.3633 0.5957 -0.8374 26 1 3.1263 -0.7995 -1.2055 27 1 1.6053 -1.7199 -1.2951 28 1 2.9227 -1.8424 -4.7317 29 1 1.6042 -0.2626 2.1369 30 1 1.7527 -1.7718 1.2049 31 1 3.5495 0.9241 2.7403 32 1 5.0053 0.7943 1.7244 33 1 3.5038 1.4679 1.0461 34 1 3.8080 -1.4107 3.2329 35 1 3.6611 -2.6171 1.9324 36 1 8.6287 -0.8872 2.6472 37 1 6.1356 -0.4988 4.7961 38 1 6.9200 0.7947 3.8581 39 1 5.1812 0.4751 3.6521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602662242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:56 Heat of formation + Delta-G solvation = 58.067819 kcal Electronic energy + Delta-G solvation = -18976.669877 eV Core-core repulsion = 16148.033239 eV Total energy + Delta-G solvation = -2828.636638 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.06384 -39.20580 -36.43422 -35.66302 -34.10784 -32.07024 -29.10747 -29.00342 -27.87137 -27.72514 -25.19297 -23.68323 -23.24225 -21.35752 -20.48806 -18.48288 -18.01521 -17.64776 -16.66542 -16.46245 -16.17328 -15.92952 -15.67017 -14.92008 -14.45772 -14.31986 -14.11519 -13.80988 -13.68156 -13.38380 -13.03281 -12.80035 -12.72655 -12.58813 -12.48588 -12.44136 -12.21158 -11.94867 -11.43158 -11.25062 -11.04812 -10.90280 -10.88252 -10.46552 -10.29885 -9.12068 -8.09401 -6.19196 0.85443 1.38829 1.40762 1.51226 1.64466 1.91483 2.44941 3.05614 3.23103 3.35926 3.72993 3.88198 3.97689 4.14330 4.22660 4.37381 4.38778 4.47681 4.54292 4.59731 4.65541 4.74889 4.80883 4.89856 4.91747 4.97618 5.04904 5.21219 5.34539 5.48527 5.54591 5.68602 5.92518 6.01644 6.05654 6.15821 6.21590 6.39053 7.01689 7.48466 7.81380 9.01999 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.005502 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.500084 B = 5087.956626 C = 5802.864219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 H 0.053 0.947 4 C 0.045 3.955 5 C -0.527 4.527 6 H 0.059 0.941 7 C -0.006 4.006 8 N -0.936 5.936 9 Si 0.957 3.043 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.076 3.924 14 N -0.561 5.561 15 C 0.027 3.973 16 C 0.148 3.852 17 C 0.186 3.814 18 N -0.340 5.340 19 N -0.358 5.358 20 C 0.162 3.838 21 N -0.471 5.471 22 C 0.055 3.945 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.042 0.958 26 H -0.008 1.008 27 H -0.024 1.024 28 H 0.258 0.742 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.265 0.735 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 6.855 22.180 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.071 0.929 4 C 0.008 3.992 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.203 4.203 8 N -0.578 5.578 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.183 1.183 13 C -0.051 4.051 14 N -0.286 5.286 15 C -0.121 4.121 16 C 0.018 3.982 17 C -0.084 4.084 18 N -0.180 5.180 19 N -0.197 5.197 20 C -0.127 4.127 21 N -0.162 5.162 22 C -0.086 4.086 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.011 0.989 27 H -0.006 1.006 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.280 0.720 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.563 5.690 20.521 21.779 hybrid contribution -0.362 1.016 0.201 1.097 sum 4.202 6.706 20.722 22.182 Atomic orbital electron populations 1.21609 0.94651 1.00989 1.01048 1.21062 0.95525 0.98498 0.94404 0.92883 1.18852 0.94804 0.93375 0.92135 1.21756 1.33893 1.08385 0.92486 0.92259 1.25979 0.95525 0.96079 1.02721 1.70161 1.40562 1.23186 1.23849 0.85568 0.78988 0.78365 0.78836 1.20311 1.21161 1.18297 1.22125 0.84821 1.00829 0.97288 1.61541 1.11360 1.04014 1.51734 1.22559 1.00285 0.89569 0.99674 1.20392 0.83078 0.97897 0.96808 1.24932 0.96178 0.94234 0.93075 1.74226 0.98856 1.23924 1.21013 1.74143 1.10013 1.17572 1.17979 1.27247 0.92057 0.98015 0.95375 1.46470 1.06133 1.33458 1.30131 1.22705 1.05729 0.92044 0.88110 0.91049 0.94040 0.93927 0.98908 1.00554 0.93343 0.91672 0.91701 0.92029 0.92577 0.92149 0.89181 0.88849 0.71964 0.87658 0.86115 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 8.91 71.98 0.64 -3.75 16 2 C -0.08 -3.02 2.39 -10.79 -0.03 -3.04 16 3 H 0.05 2.12 6.71 -2.39 -0.02 2.11 16 4 C 0.05 2.50 4.39 29.85 0.13 2.63 16 5 C -0.53 -31.00 8.48 25.60 0.22 -30.78 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 8 N -0.94 -61.50 13.29 21.45 0.28 -61.21 16 9 Si 0.96 46.69 29.54 68.60 2.03 48.72 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 13 C 0.08 2.37 4.39 86.30 0.38 2.75 16 14 N -0.56 -17.84 4.06 -927.06 -3.76 -21.60 16 15 C 0.03 0.66 7.83 127.69 1.00 1.66 16 16 C 0.15 3.95 5.18 85.56 0.44 4.39 16 17 C 0.19 5.67 6.65 137.98 0.92 6.59 16 18 N -0.34 -13.87 12.21 -50.15 -0.61 -14.48 16 19 N -0.36 -13.02 12.21 -59.99 -0.73 -13.75 16 20 C 0.16 3.72 12.74 180.11 2.30 6.02 16 21 N -0.47 -9.77 2.77 -542.08 -1.50 -11.27 16 22 C 0.05 0.44 10.14 127.77 1.30 1.74 16 23 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.63 7.12 -2.39 -0.02 1.61 16 26 H -0.01 -0.47 7.62 -2.38 -0.02 -0.49 16 27 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 28 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 29 H 0.07 1.51 8.00 -2.38 -0.02 1.49 16 30 H 0.06 2.10 7.74 -2.39 -0.02 2.08 16 31 H 0.06 0.99 7.23 -2.39 -0.02 0.98 16 32 H 0.06 1.38 5.73 -2.39 -0.01 1.36 16 33 H 0.06 1.73 6.70 -2.39 -0.02 1.71 16 34 H 0.09 1.56 7.83 -2.39 -0.02 1.54 16 35 H 0.09 2.75 7.83 -2.39 -0.02 2.73 16 36 H 0.26 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.10 0.79 4.73 -2.39 -0.01 0.78 16 Total: -1.00 -86.64 313.34 4.48 -82.16 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.02 Total: 3.17 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 7.76 Total: -11.73 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -6.32 Total: -122.32 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -86.64 4.48 -82.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602662242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.230 kcal (2) G-P(sol) polarization free energy of solvation -86.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds