Wall clock time and date at job start Sun Mar 29 2020 23:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46731 * 2 1 4 4 C 1.35313 * 125.86677 * 125.29865 * 3 2 1 5 5 C 1.35352 * 106.17359 * 180.18219 * 4 3 2 6 6 C 1.50694 * 126.75552 * 179.84808 * 5 4 3 7 7 N 1.46910 * 109.47067 * 94.71240 * 6 5 4 8 8 C 1.46898 * 111.00101 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47092 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46862 * 55.00713 * 9 8 7 11 11 C 1.52997 * 109.47482 * 295.00148 * 9 8 7 12 12 C 1.53006 * 109.47223 * 174.99860 * 9 8 7 13 13 C 1.50695 * 109.47196 * 185.00102 * 12 9 8 14 14 H 1.07999 * 120.00313 * 0.02562 * 13 12 9 15 15 C 1.37882 * 119.99880 * 179.97438 * 13 12 9 16 16 N 1.31508 * 120.00054 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99981 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47066 * 90.00098 * 17 15 13 19 19 H 1.48493 * 109.47265 * 210.00378 * 17 15 13 20 20 H 1.48503 * 109.47173 * 330.00700 * 17 15 13 21 21 N 1.33778 * 106.49485 * 359.58901 * 5 4 3 22 22 N 1.28631 * 108.88709 * 0.26223 * 21 5 4 23 23 H 1.08992 * 109.47183 * 299.99746 * 1 2 3 24 24 H 1.08999 * 109.47412 * 60.00205 * 1 2 3 25 25 H 1.08999 * 109.46832 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47511 * 240.00046 * 2 1 3 27 27 H 1.08999 * 109.47412 * 119.99795 * 2 1 3 28 28 H 1.07998 * 126.91538 * 0.03617 * 4 3 2 29 29 H 1.09004 * 109.47057 * 334.71833 * 6 5 4 30 30 H 1.08996 * 109.47788 * 214.71175 * 6 5 4 31 31 H 1.00896 * 110.99817 * 56.04942 * 7 6 5 32 32 H 1.09002 * 109.47308 * 60.00022 * 8 7 6 33 33 H 1.09006 * 109.47288 * 300.00665 * 8 7 6 34 34 H 1.09002 * 109.47153 * 59.99783 * 11 9 8 35 35 H 1.09001 * 109.46832 * 299.99974 * 11 9 8 36 36 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 37 37 H 1.09007 * 109.47135 * 305.00448 * 12 9 8 38 38 H 1.08996 * 109.46945 * 64.99955 * 12 9 8 39 39 H 0.97003 * 120.00316 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8799 1.9176 0.8950 5 6 3.0529 3.2081 0.5251 6 6 3.9214 4.2331 1.2077 7 7 5.2371 4.2726 0.5552 8 6 6.1129 5.2627 1.1960 9 6 7.4708 5.2744 0.4911 10 1 7.3252 5.4484 -0.5750 11 6 8.1644 3.9264 0.6979 12 6 8.3394 6.3900 1.0759 13 6 9.6284 6.4817 0.3006 14 1 9.8097 5.8117 -0.5268 15 6 10.5757 7.4218 0.6468 16 7 10.3547 8.2380 1.6540 17 14 12.1732 7.5361 -0.3147 18 1 12.0043 8.4853 -1.4442 19 1 13.2559 8.0185 0.5797 20 1 12.5292 6.1951 -0.8443 21 7 2.3057 3.3931 -0.5690 22 7 1.7052 2.2918 -0.8543 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.3358 1.4174 1.7366 29 1 4.0442 3.9645 2.2569 30 1 3.4509 5.2136 1.1362 31 1 5.1454 4.4562 -0.4327 32 1 6.2508 5.0009 2.2451 33 1 5.6577 6.2506 1.1249 34 1 7.5456 3.1317 0.2813 35 1 8.3100 3.7525 1.7641 36 1 9.1317 3.9346 0.1953 37 1 7.8065 7.3385 1.0086 38 1 8.5587 6.1699 2.1206 39 1 11.0210 8.8997 1.8974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602709674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:42 Heat of formation + Delta-G solvation = 77.602788 kcal Electronic energy + Delta-G solvation = -17824.345291 eV Core-core repulsion = 14996.555753 eV Total energy + Delta-G solvation = -2827.789538 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.33070 -37.01004 -35.72269 -34.09901 -32.18855 -31.13061 -30.68854 -27.05664 -26.21636 -24.95336 -24.22077 -22.18090 -21.95813 -20.78973 -19.05594 -17.50317 -16.62373 -16.28470 -15.47061 -15.11088 -14.83418 -14.56742 -14.23541 -14.05385 -13.37773 -13.14145 -12.75836 -12.66622 -12.28078 -12.13073 -11.93976 -11.51093 -11.44712 -11.31768 -10.89418 -10.82578 -10.68403 -10.25625 -10.22268 -10.17616 -9.65237 -9.37576 -9.05874 -8.90232 -8.28988 -8.08262 -5.93933 -3.94681 1.49733 2.15324 2.45574 3.35945 3.42047 3.45624 4.01785 4.29597 4.35126 4.50261 4.60420 4.66354 4.86371 4.96989 5.06799 5.13539 5.39966 5.41924 5.52654 5.63662 5.74921 5.85342 5.99529 6.09449 6.21081 6.44457 6.44591 6.59747 6.73128 7.05134 7.22270 7.23887 7.38814 7.67426 7.74629 7.90296 8.06706 8.44122 8.51046 9.11737 9.68452 11.17645 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.057703 B = 0.003066 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.126653 B = 9130.882785 C = 9271.225197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.296 5.296 4 C -0.034 4.034 5 C -0.012 4.012 6 C 0.143 3.857 7 N -0.684 5.684 8 C 0.064 3.936 9 C -0.083 4.083 10 H 0.054 0.946 11 C -0.122 4.122 12 C 0.027 3.973 13 C -0.511 4.511 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.265 5.265 22 N -0.089 5.089 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.190 0.810 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.342 0.658 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 -17.140 0.594 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.090 5.090 4 C -0.185 4.185 5 C -0.150 4.150 6 C 0.012 3.988 7 N -0.316 5.316 8 C -0.065 4.065 9 C -0.102 4.102 10 H 0.072 0.928 11 C -0.179 4.179 12 C -0.010 4.010 13 C -0.550 4.550 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.133 5.133 22 N -0.068 5.068 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.207 0.793 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.160 0.840 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.774 -17.229 -0.198 25.482 hybrid contribution 1.153 0.531 0.212 1.287 sum -17.621 -16.698 0.014 24.276 Atomic orbital electron populations 1.22077 0.92765 1.03631 1.04043 1.22072 0.96836 0.76678 1.05267 1.47436 1.30614 1.11918 1.19043 1.23402 0.99592 0.95536 0.99990 1.21967 1.01683 0.94828 0.96500 1.20097 0.87524 0.94092 0.97103 1.60592 1.10200 1.53096 1.07665 1.22172 0.93679 0.91714 0.98891 1.21197 0.92531 0.97531 0.98891 0.92798 1.21583 0.99810 0.96135 1.00410 1.19126 0.93651 0.92084 0.96187 1.21245 1.01682 1.16847 1.15210 0.92587 1.25021 0.98468 0.95855 0.95251 1.69964 1.35180 1.20686 1.27895 0.86632 0.83495 0.78267 0.79838 1.20769 1.21332 1.19913 1.75068 1.08776 1.16004 1.13424 1.78231 1.21094 0.92889 1.14614 0.91762 0.90657 0.89937 0.88335 0.87667 0.79298 0.89503 0.93563 0.83995 0.91386 0.95466 0.94050 0.94164 0.92828 0.96860 0.96523 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.04 37.16 0.37 -0.40 16 2 C 0.11 0.58 7.18 -4.04 -0.03 0.55 16 3 N -0.30 -2.97 3.44 -61.26 -0.21 -3.18 16 4 C -0.03 -0.35 11.50 -17.05 -0.20 -0.54 16 5 C -0.01 -0.15 6.76 -82.78 -0.56 -0.71 16 6 C 0.14 1.85 6.25 -4.97 -0.03 1.82 16 7 N -0.68 -10.37 5.94 -115.06 -0.68 -11.05 16 8 C 0.06 1.11 5.07 -3.83 -0.02 1.09 16 9 C -0.08 -1.71 2.48 -90.62 -0.22 -1.94 16 10 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 11 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 12 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 13 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 14 H 0.06 1.56 7.06 -52.49 -0.37 1.18 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 N -0.27 -4.06 12.41 33.29 0.41 -3.65 16 22 N -0.09 -1.21 12.91 60.35 0.78 -0.44 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 25 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.11 0.26 8.07 -51.93 -0.42 -0.16 16 28 H 0.19 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.34 5.42 8.72 -39.29 -0.34 5.08 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -33.31 327.93 -6.44 -39.75 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.53 Total: -1.88 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -0.87 Total: -14.94 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 1.03 Total: -44.82 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.31 -6.44 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602709674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.348 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds