Wall clock time and date at job start Sun Mar 29 2020 23:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47112 * 2 1 4 4 C 1.52998 * 109.47345 * 120.00774 * 2 1 3 5 5 C 1.50706 * 109.46760 * 294.99461 * 4 2 1 6 6 H 1.07995 * 119.99697 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99588 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00403 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99833 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47058 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47366 * 119.99724 * 9 7 5 12 12 H 1.48499 * 109.46700 * 240.00090 * 9 7 5 13 13 C 1.53008 * 109.46933 * 240.00523 * 2 1 3 14 14 N 1.46897 * 109.47066 * 64.99754 * 13 2 1 15 15 C 1.46900 * 111.00049 * 66.04908 * 14 13 2 16 16 C 1.46903 * 111.00218 * 190.00044 * 14 13 2 17 17 C 1.50701 * 109.47224 * 170.00126 * 16 14 13 18 18 C 1.35351 * 126.74701 * 94.95234 * 17 16 14 19 19 N 1.35322 * 106.16806 * 180.02562 * 18 17 16 20 20 C 1.46502 * 125.86299 * 180.26356 * 19 18 17 21 21 N 1.28714 * 108.26464 * 0.02562 * 19 18 17 22 22 N 1.28629 * 110.17964 * 359.97438 * 21 19 18 23 23 H 1.09001 * 109.47106 * 59.99230 * 1 2 3 24 24 H 1.08995 * 109.47061 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46763 * 299.99615 * 1 2 3 26 26 H 1.08992 * 109.47340 * 54.99777 * 4 2 1 27 27 H 1.08998 * 109.47216 * 174.99993 * 4 2 1 28 28 H 0.97000 * 120.00167 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.46892 * 305.00386 * 13 2 1 30 30 H 1.08997 * 109.47077 * 184.99944 * 13 2 1 31 31 H 1.09001 * 109.47607 * 183.95213 * 15 14 13 32 32 H 1.09003 * 109.47224 * 303.95179 * 15 14 13 33 33 H 1.08999 * 109.47546 * 63.95188 * 15 14 13 34 34 H 1.08999 * 109.46963 * 49.99852 * 16 14 13 35 35 H 1.09001 * 109.46908 * 290.00058 * 16 14 13 36 36 H 1.07991 * 126.91591 * 0.05646 * 18 17 16 37 37 H 1.08997 * 109.47250 * 269.71379 * 20 19 18 38 38 H 1.09003 * 109.47080 * 29.71873 * 20 19 18 39 39 H 1.09006 * 109.46804 * 149.71734 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0569 2.4766 6 1 1.0801 0.9740 2.3757 7 6 1.9934 -0.4020 3.7281 8 7 2.6774 -1.5186 3.8508 9 14 1.4988 0.5623 5.2497 10 1 0.7415 1.7734 4.8436 11 1 0.6454 -0.2874 6.1186 12 1 2.7167 0.9678 5.9962 13 6 2.0400 -0.7212 -1.2494 14 7 1.6513 0.0376 -2.4457 15 6 2.3340 1.3375 -2.4894 16 6 1.9123 -0.7355 -3.6673 17 6 1.2828 -0.0394 -4.8464 18 6 1.8880 0.8246 -5.6945 19 7 0.9449 1.1953 -6.5912 20 6 1.1408 2.1210 -7.7097 21 7 -0.1525 0.5911 -6.2956 22 7 0.0157 -0.1530 -5.2600 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6055 -1.7199 1.2950 27 1 3.1263 -0.7996 1.2054 28 1 2.9247 -1.8416 4.7314 29 1 1.6053 -1.7196 -1.2954 30 1 3.1263 -0.7994 -1.2058 31 1 1.9759 1.9074 -3.3468 32 1 2.1240 1.8893 -1.5732 33 1 3.4088 1.1807 -2.5808 34 1 1.4856 -1.7331 -3.5640 35 1 2.9880 -0.8148 -3.8241 36 1 2.9167 1.1517 -5.6623 37 1 0.9188 3.1371 -7.3836 38 1 2.1750 2.0663 -8.0498 39 1 0.4743 1.8483 -8.5280 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602710968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:49 Heat of formation + Delta-G solvation = 94.161383 kcal Electronic energy + Delta-G solvation = -18380.134687 eV Core-core repulsion = 15553.063183 eV Total energy + Delta-G solvation = -2827.071504 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.31933 -37.86377 -35.04134 -34.22961 -32.20305 -31.10148 -28.40097 -27.24692 -27.03506 -26.15031 -23.73070 -22.15328 -21.94186 -20.65973 -18.77864 -17.31718 -16.82182 -16.31047 -15.29317 -15.17926 -14.94636 -14.33632 -14.31295 -13.75631 -13.49939 -13.35723 -12.74454 -12.48513 -12.31777 -11.78978 -11.68847 -11.47165 -11.30490 -11.17038 -10.80896 -10.78065 -10.66272 -10.23372 -10.21889 -10.13712 -9.53516 -9.35347 -9.04056 -8.88861 -8.28511 -7.97174 -5.93457 -3.94018 1.45978 2.19368 2.47872 3.35113 3.42660 3.47107 4.10088 4.34574 4.36298 4.53042 4.59595 4.75510 4.87184 5.00654 5.30237 5.42418 5.46204 5.54310 5.66021 5.81200 5.87047 6.03284 6.08701 6.13979 6.27187 6.40689 6.48932 6.62231 6.79681 7.09357 7.22515 7.28318 7.40881 7.48423 7.75143 7.91815 8.07578 8.46555 8.52115 9.12712 9.69203 11.18173 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.052863 B = 0.003585 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.543175 B = 7807.603554 C = 7880.141421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.062 3.938 14 N -0.532 5.532 15 C 0.023 3.977 16 C 0.137 3.863 17 C 0.001 3.999 18 C -0.052 4.052 19 N -0.299 5.299 20 C 0.083 3.917 21 N -0.092 5.092 22 N -0.249 5.249 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.258 0.742 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.022 0.978 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.187 0.813 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 6.440 -22.434 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.065 4.065 14 N -0.256 5.256 15 C -0.125 4.125 16 C 0.007 3.993 17 C -0.137 4.137 18 C -0.203 4.203 19 N -0.092 5.092 20 C -0.059 4.059 21 N -0.072 5.072 22 N -0.116 5.116 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.204 0.796 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.156 6.225 -22.696 23.535 hybrid contribution 1.891 0.690 0.998 2.247 sum 1.735 6.915 -21.698 22.839 Atomic orbital electron populations 1.21579 0.95679 1.00630 1.00132 1.21233 0.96058 0.99016 0.93634 0.92605 1.19133 0.95851 0.95630 0.90460 1.21283 1.34293 1.08259 0.90984 0.92540 1.25016 0.95397 0.95108 0.99065 1.69975 1.39268 1.21303 1.23200 0.86589 0.78208 0.80172 0.83361 1.19759 1.21095 1.21177 1.22351 0.97601 0.97344 0.89203 1.61933 1.58474 1.03939 1.01249 1.22426 0.95448 0.91996 1.02642 1.20282 0.96757 0.96654 0.85606 1.21900 0.91371 1.00966 0.99502 1.23381 0.98057 1.04035 0.94840 1.47217 1.08049 1.31713 1.22239 1.22221 1.04596 0.92175 0.86867 1.78330 1.08170 1.07928 1.12746 1.75092 1.16215 1.15551 1.04715 0.93869 0.94120 0.92913 0.96515 0.96961 0.93205 0.91035 0.95152 0.92593 0.90494 0.95951 0.88972 0.93290 0.79619 0.89180 0.88483 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.89 37.16 0.33 -2.19 16 2 C -0.08 -1.68 2.26 -90.62 -0.20 -1.89 16 3 H 0.06 1.18 6.26 -51.93 -0.33 0.85 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.06 1.08 4.35 -3.82 -0.02 1.07 16 14 N -0.53 -8.22 4.21 -244.37 -1.03 -9.25 16 15 C 0.02 0.32 9.13 60.06 0.55 0.87 16 16 C 0.14 1.80 5.53 -4.97 -0.03 1.77 16 17 C 0.00 0.02 5.97 -82.78 -0.49 -0.47 16 18 C -0.05 -0.51 10.56 -17.04 -0.18 -0.69 16 19 N -0.30 -2.96 3.74 -68.05 -0.25 -3.22 16 20 C 0.08 0.34 11.39 59.85 0.68 1.03 16 21 N -0.09 -1.29 13.16 60.35 0.79 -0.50 16 22 N -0.25 -3.96 12.41 33.29 0.41 -3.55 16 23 H 0.04 0.83 7.75 -51.93 -0.40 0.43 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 30 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 32 H 0.08 1.16 6.21 -51.93 -0.32 0.84 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 35 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -34.26 320.31 -5.71 -39.97 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -6.31 Total: -5.54 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 0.13 Total: -13.21 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.66 Total: -42.98 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.26 -5.71 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602710968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.135 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds