Wall clock time and date at job start Sun Mar 29 2020 23:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47112 * 2 1 4 4 C 1.52998 * 109.47345 * 120.00774 * 2 1 3 5 5 C 1.50706 * 109.46760 * 294.99461 * 4 2 1 6 6 H 1.07995 * 119.99697 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99588 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00403 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99833 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47058 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47366 * 119.99724 * 9 7 5 12 12 H 1.48499 * 109.46700 * 240.00090 * 9 7 5 13 13 C 1.53008 * 109.46933 * 240.00523 * 2 1 3 14 14 N 1.46897 * 109.47066 * 64.99754 * 13 2 1 15 15 C 1.46900 * 111.00049 * 66.04908 * 14 13 2 16 16 C 1.46903 * 111.00218 * 190.00044 * 14 13 2 17 17 C 1.50701 * 109.47224 * 170.00126 * 16 14 13 18 18 C 1.35351 * 126.74701 * 94.95234 * 17 16 14 19 19 N 1.35322 * 106.16806 * 180.02562 * 18 17 16 20 20 C 1.46502 * 125.86299 * 180.26356 * 19 18 17 21 21 N 1.28714 * 108.26464 * 0.02562 * 19 18 17 22 22 N 1.28629 * 110.17964 * 359.97438 * 21 19 18 23 23 H 1.09001 * 109.47106 * 59.99230 * 1 2 3 24 24 H 1.08995 * 109.47061 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46763 * 299.99615 * 1 2 3 26 26 H 1.08992 * 109.47340 * 54.99777 * 4 2 1 27 27 H 1.08998 * 109.47216 * 174.99993 * 4 2 1 28 28 H 0.97000 * 120.00167 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.46892 * 305.00386 * 13 2 1 30 30 H 1.08997 * 109.47077 * 184.99944 * 13 2 1 31 31 H 1.09001 * 109.47607 * 183.95213 * 15 14 13 32 32 H 1.09003 * 109.47224 * 303.95179 * 15 14 13 33 33 H 1.08999 * 109.47546 * 63.95188 * 15 14 13 34 34 H 1.08999 * 109.46963 * 49.99852 * 16 14 13 35 35 H 1.09001 * 109.46908 * 290.00058 * 16 14 13 36 36 H 1.07991 * 126.91591 * 0.05646 * 18 17 16 37 37 H 1.08997 * 109.47250 * 269.71379 * 20 19 18 38 38 H 1.09003 * 109.47080 * 29.71873 * 20 19 18 39 39 H 1.09006 * 109.46804 * 149.71734 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0569 2.4766 6 1 1.0801 0.9740 2.3757 7 6 1.9934 -0.4020 3.7281 8 7 2.6774 -1.5186 3.8508 9 14 1.4988 0.5623 5.2497 10 1 0.7415 1.7734 4.8436 11 1 0.6454 -0.2874 6.1186 12 1 2.7167 0.9678 5.9962 13 6 2.0400 -0.7212 -1.2494 14 7 1.6513 0.0376 -2.4457 15 6 2.3340 1.3375 -2.4894 16 6 1.9123 -0.7355 -3.6673 17 6 1.2828 -0.0394 -4.8464 18 6 1.8880 0.8246 -5.6945 19 7 0.9449 1.1953 -6.5912 20 6 1.1408 2.1210 -7.7097 21 7 -0.1525 0.5911 -6.2956 22 7 0.0157 -0.1530 -5.2600 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6055 -1.7199 1.2950 27 1 3.1263 -0.7996 1.2054 28 1 2.9247 -1.8416 4.7314 29 1 1.6053 -1.7196 -1.2954 30 1 3.1263 -0.7994 -1.2058 31 1 1.9759 1.9074 -3.3468 32 1 2.1240 1.8893 -1.5732 33 1 3.4088 1.1807 -2.5808 34 1 1.4856 -1.7331 -3.5640 35 1 2.9880 -0.8148 -3.8241 36 1 2.9167 1.1517 -5.6623 37 1 0.9188 3.1371 -7.3836 38 1 2.1750 2.0663 -8.0498 39 1 0.4743 1.8483 -8.5280 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602710968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:48 Heat of formation + Delta-G solvation = 70.146802 kcal Electronic energy + Delta-G solvation = -18381.176037 eV Core-core repulsion = 15553.063183 eV Total energy + Delta-G solvation = -2828.112854 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.16740 -39.17668 -36.37685 -35.38844 -34.09154 -32.23117 -29.09544 -28.91683 -28.20784 -27.60192 -25.46928 -23.42892 -22.92560 -21.65675 -20.45149 -18.49929 -18.00492 -17.59173 -16.70877 -16.38737 -16.14230 -15.92868 -15.34727 -15.08890 -14.41483 -14.23795 -14.04041 -13.90533 -13.50828 -13.29169 -13.11351 -12.77815 -12.73717 -12.56207 -12.54340 -12.44864 -12.19957 -11.93681 -11.67364 -11.34415 -11.03684 -10.98833 -10.85777 -10.50808 -10.18069 -9.13974 -8.15209 -6.23668 0.68018 1.40586 1.41535 1.49550 1.54399 1.63731 2.43816 3.15551 3.18265 3.43069 3.82152 4.03928 4.12486 4.19583 4.30972 4.36553 4.48176 4.54346 4.57926 4.65264 4.66914 4.77160 4.93811 4.96246 4.99275 5.03023 5.14364 5.19777 5.31841 5.49399 5.51849 5.58817 5.73736 5.84029 5.92679 6.14042 6.24096 6.35730 6.92369 7.44296 7.57595 8.97005 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.052863 B = 0.003585 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.543175 B = 7807.603554 C = 7880.141421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 H 0.057 0.943 4 C 0.034 3.966 5 C -0.527 4.527 6 H 0.058 0.942 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.075 3.925 14 N -0.546 5.546 15 C 0.026 3.974 16 C 0.141 3.859 17 C -0.025 4.025 18 C -0.029 4.029 19 N -0.288 5.288 20 C 0.070 3.930 21 N -0.126 5.126 22 N -0.299 5.299 23 H 0.056 0.944 24 H 0.034 0.966 25 H 0.036 0.964 26 H -0.010 1.010 27 H -0.010 1.010 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 8.295 -23.771 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.204 1.204 13 C -0.053 4.053 14 N -0.270 5.270 15 C -0.122 4.122 16 C 0.011 3.989 17 C -0.164 4.164 18 C -0.182 4.182 19 N -0.082 5.082 20 C -0.069 4.069 21 N -0.105 5.105 22 N -0.165 5.165 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.008 0.992 27 H 0.009 0.991 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.246 0.754 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.736 8.102 -24.077 25.414 hybrid contribution 1.652 0.152 1.308 2.112 sum 2.388 8.254 -22.768 24.336 Atomic orbital electron populations 1.21455 0.95376 1.00178 0.99905 1.21038 0.96126 0.98703 0.93171 0.92515 1.19005 0.94280 0.94607 0.92495 1.21664 1.34165 1.08503 0.92169 0.92360 1.25918 0.95327 0.96108 1.02525 1.70101 1.40374 1.22917 1.24169 0.85486 0.78085 0.78884 0.79132 1.18757 1.20648 1.20380 1.22033 0.97464 0.96817 0.88953 1.61814 1.59312 1.04610 1.01263 1.22406 0.96472 0.90949 1.02330 1.20250 0.98241 0.95756 0.84606 1.22008 0.91196 1.02722 1.00521 1.23933 0.99321 1.01839 0.93084 1.47671 1.06963 1.30882 1.22688 1.22734 1.07073 0.91662 0.85451 1.78231 1.10044 1.09204 1.13053 1.75018 1.18151 1.17247 1.06112 0.92505 0.94680 0.94500 0.99197 0.99116 0.92960 0.91576 0.94873 0.91149 0.92284 0.94151 0.90182 0.90620 0.75375 0.87679 0.84962 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 8.89 71.98 0.64 -3.99 16 2 C -0.07 -3.01 2.26 -10.79 -0.02 -3.04 16 3 H 0.06 2.38 6.26 -2.38 -0.01 2.37 16 4 C 0.03 1.79 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.26 8.41 25.60 0.22 -30.04 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 8 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 9 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 10 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.07 2.61 4.35 86.31 0.38 2.98 16 14 N -0.55 -16.19 4.21 -927.05 -3.90 -20.09 16 15 C 0.03 0.67 9.13 127.69 1.17 1.83 16 16 C 0.14 3.49 5.53 85.56 0.47 3.96 16 17 C -0.02 -0.61 5.97 41.60 0.25 -0.36 16 18 C -0.03 -0.48 10.56 83.49 0.88 0.40 16 19 N -0.29 -4.97 3.74 -369.22 -1.38 -6.35 16 20 C 0.07 0.34 11.39 127.77 1.46 1.79 16 21 N -0.13 -3.43 13.16 37.02 0.49 -2.95 16 22 N -0.30 -9.47 12.41 -48.60 -0.60 -10.07 16 23 H 0.06 2.18 7.75 -2.39 -0.02 2.16 16 24 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.60 6.95 -2.39 -0.02 1.59 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 30 H 0.03 1.13 8.12 -2.39 -0.02 1.11 16 31 H 0.07 1.57 6.56 -2.39 -0.02 1.55 16 32 H 0.06 1.70 6.21 -2.39 -0.01 1.69 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.08 2.14 7.93 -2.39 -0.02 2.12 16 35 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 36 H 0.23 1.57 8.06 -2.92 -0.02 1.55 16 37 H 0.10 0.26 8.14 -2.39 -0.02 0.25 16 38 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -76.15 320.31 3.95 -72.19 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.01 Total: 1.56 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 6.03 Total: -24.18 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -5.11 Total: -96.72 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.15 3.95 -72.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602710968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.340 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds