Wall clock time and date at job start Sun Mar 29 2020 23:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47174 * 2 1 4 4 N 1.28713 * 125.87159 * 269.97686 * 3 2 1 5 5 N 1.28632 * 110.17975 * 179.74661 * 4 3 2 6 6 C 1.33767 * 108.88855 * 0.44871 * 5 4 3 7 7 C 1.35314 * 125.86654 * 90.00141 * 3 2 1 8 8 C 1.50700 * 126.91532 * 0.02562 * 7 3 2 9 9 N 1.46902 * 109.47153 * 274.98298 * 8 7 3 10 10 C 1.46893 * 110.99905 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.09005 * 109.47147 * 304.99905 * 11 10 9 13 13 C 1.52998 * 109.46926 * 64.99708 * 11 10 9 14 14 C 1.52998 * 109.47352 * 185.00175 * 11 10 9 15 15 C 1.50702 * 109.47080 * 174.99903 * 14 11 10 16 16 H 1.07999 * 119.99971 * 359.97438 * 15 14 11 17 17 C 1.37878 * 119.99926 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00066 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99927 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47185 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47364 * 119.99984 * 19 17 15 22 22 H 1.48497 * 109.46646 * 240.00138 * 19 17 15 23 23 H 1.09001 * 109.46949 * 59.99676 * 1 2 3 24 24 H 1.08996 * 109.47320 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46668 * 300.00022 * 1 2 3 26 26 H 1.08996 * 109.46961 * 240.00208 * 2 1 3 27 27 H 1.09001 * 109.46949 * 120.00323 * 2 1 3 28 28 H 1.08002 * 126.75726 * 179.83217 * 6 5 4 29 29 H 1.09000 * 109.46761 * 34.98229 * 8 7 3 30 30 H 1.09001 * 109.47170 * 154.98159 * 8 7 3 31 31 H 1.00895 * 110.99792 * 303.95153 * 9 8 7 32 32 H 1.09000 * 109.47487 * 299.99956 * 10 9 8 33 33 H 1.09004 * 109.47458 * 60.00178 * 10 9 8 34 34 H 1.08993 * 109.46937 * 60.00592 * 13 11 10 35 35 H 1.09006 * 109.46972 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47272 * 300.00110 * 13 11 10 37 37 H 1.09005 * 109.47016 * 294.99603 * 14 11 10 38 38 H 1.09001 * 109.47222 * 54.99651 * 14 11 10 39 39 H 0.96999 * 119.99808 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2702 2.0921 -1.0430 5 7 2.6778 3.2615 -0.6951 6 6 2.7080 3.3300 0.6405 7 6 2.2826 2.1286 1.0966 8 6 2.1345 1.7079 2.5360 9 7 0.7471 1.9222 2.9685 10 6 0.5647 1.5216 4.3700 11 6 -0.8890 1.7596 4.7834 12 1 -1.1564 2.7985 4.5901 13 6 -1.8061 0.8384 3.9764 14 6 -1.0505 1.4607 6.2752 15 6 -2.4503 1.8118 6.7092 16 1 -3.1542 2.2089 5.9928 17 6 -2.8324 1.6261 8.0210 18 7 -1.9753 1.1421 8.8933 19 14 -4.5677 2.0607 8.5588 20 1 -5.3303 2.5822 7.3962 21 1 -5.2402 0.8474 9.0886 22 1 -4.5118 3.0986 9.6193 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.0081 4.1785 1.2375 29 1 2.3865 0.6519 2.6336 30 1 2.8049 2.3004 3.1586 31 1 0.4684 2.8816 2.8272 32 1 0.8056 0.4643 4.4800 33 1 1.2242 2.1125 5.0056 34 1 -1.5388 -0.2004 4.1698 35 1 -2.8418 1.0083 4.2706 36 1 -1.6911 1.0515 2.9136 37 1 -0.8694 0.4009 6.4551 38 1 -0.3342 2.0534 6.8442 39 1 -2.2440 1.0118 9.8161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602720937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:45 Heat of formation + Delta-G solvation = 75.770727 kcal Electronic energy + Delta-G solvation = -18455.500302 eV Core-core repulsion = 15627.631320 eV Total energy + Delta-G solvation = -2827.868982 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.32251 -37.18449 -35.55069 -34.39073 -32.32975 -30.84896 -30.75131 -27.13466 -26.34615 -24.58306 -24.27337 -22.55298 -22.24601 -20.59015 -19.18837 -17.46891 -16.44270 -16.33853 -15.64578 -14.89313 -14.81638 -14.69872 -14.16415 -14.02796 -13.64464 -13.11122 -12.83118 -12.59734 -12.27508 -12.08090 -11.83484 -11.59386 -11.45804 -11.43443 -10.90942 -10.88565 -10.79773 -10.35821 -10.33414 -10.16004 -9.78895 -9.41467 -9.15177 -8.99686 -8.38021 -8.35643 -6.02515 -4.03731 1.48729 2.27700 2.50526 3.28977 3.37001 3.40790 4.15692 4.27388 4.42089 4.46837 4.68828 4.80204 4.85616 4.93677 5.27248 5.33516 5.34430 5.43602 5.50114 5.59661 5.73819 5.83571 5.98636 6.06368 6.09224 6.28207 6.42000 6.51985 6.57164 6.87406 7.06394 7.08445 7.18466 7.42512 7.63398 7.77891 7.97271 8.40944 8.45753 9.02835 9.60223 11.08986 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039450 B = 0.003826 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.583288 B = 7316.950658 C = 7545.846360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.114 3.886 3 N -0.275 5.275 4 N -0.092 5.092 5 N -0.275 5.275 6 C -0.051 4.051 7 C -0.005 4.005 8 C 0.128 3.872 9 N -0.684 5.684 10 C 0.064 3.936 11 C -0.082 4.082 12 H 0.054 0.946 13 C -0.122 4.122 14 C 0.027 3.973 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.186 0.814 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.343 0.657 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 -2.203 -14.260 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.007 4.007 3 N -0.070 5.070 4 N -0.071 5.071 5 N -0.140 5.140 6 C -0.210 4.210 7 C -0.138 4.138 8 C -0.003 4.003 9 N -0.316 5.316 10 C -0.064 4.064 11 C -0.101 4.101 12 H 0.073 0.927 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.203 0.797 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.161 -2.850 -15.898 18.096 hybrid contribution -0.513 0.785 2.130 2.328 sum 7.647 -2.065 -13.768 15.884 Atomic orbital electron populations 1.22198 0.92352 1.03901 1.04628 1.22070 0.97091 0.76405 1.05089 1.47398 1.41711 1.13547 1.04304 1.78260 1.17633 0.99168 1.12073 1.75060 1.16038 1.10428 1.12486 1.23380 1.07284 0.98222 0.92082 1.22178 1.06405 0.93344 0.91911 1.20332 0.91764 1.01726 0.86490 1.60592 1.18956 1.28945 1.23134 1.22194 0.98740 1.00255 0.85218 1.21204 0.91146 0.98970 0.98795 0.92720 1.21592 1.00025 0.98557 0.97795 1.19124 0.96883 0.96924 0.88097 1.21262 0.97481 1.42124 0.94278 0.92523 1.25016 0.97187 0.95405 0.96899 1.69970 1.34602 1.45677 1.03391 0.86582 0.84981 0.78074 0.78656 1.19740 1.21065 1.21084 0.91915 0.90070 0.89366 0.88148 0.87933 0.79675 0.89884 0.92230 0.83848 0.91336 0.95253 0.94138 0.92705 0.94138 0.96545 0.96874 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.16 0.38 -1.10 16 2 C 0.11 0.94 6.90 -4.04 -0.03 0.91 16 3 N -0.28 -3.16 3.34 -57.05 -0.19 -3.35 16 4 N -0.09 -1.30 13.16 60.35 0.79 -0.50 16 5 N -0.28 -4.02 12.41 30.24 0.38 -3.64 16 6 C -0.05 -0.61 11.99 -17.74 -0.21 -0.82 16 7 C -0.01 -0.06 6.51 -82.08 -0.53 -0.59 16 8 C 0.13 1.28 5.91 -4.97 -0.03 1.25 16 9 N -0.68 -8.22 5.92 -115.06 -0.68 -8.90 16 10 C 0.06 0.95 5.07 -3.83 -0.02 0.93 16 11 C -0.08 -1.54 2.48 -90.62 -0.22 -1.76 16 12 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.12 -2.17 8.89 37.16 0.33 -1.84 16 14 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 15 C -0.51 -13.93 8.41 -34.44 -0.29 -14.22 16 16 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 0.68 7.22 -51.93 -0.38 0.31 16 28 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.08 0.76 7.32 -51.93 -0.38 0.38 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.34 4.19 8.72 -39.29 -0.34 3.84 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 1.07 6.95 -51.93 -0.36 0.71 16 36 H 0.04 0.63 7.75 -51.93 -0.40 0.23 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -31.11 326.22 -6.36 -37.47 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.44 Total: -1.37 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.85 Total: -15.26 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 1.03 Total: -42.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.11 -6.36 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602720937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.240 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds