Wall clock time and date at job start Sun Mar 29 2020 23:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47174 * 2 1 4 4 N 1.28713 * 125.87159 * 269.97686 * 3 2 1 5 5 N 1.28632 * 110.17975 * 179.74661 * 4 3 2 6 6 C 1.33767 * 108.88855 * 0.44871 * 5 4 3 7 7 C 1.35314 * 125.86654 * 90.00141 * 3 2 1 8 8 C 1.50700 * 126.91532 * 0.02562 * 7 3 2 9 9 N 1.46902 * 109.47153 * 274.98298 * 8 7 3 10 10 C 1.46893 * 110.99905 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.09005 * 109.47147 * 304.99905 * 11 10 9 13 13 C 1.52998 * 109.46926 * 64.99708 * 11 10 9 14 14 C 1.52998 * 109.47352 * 185.00175 * 11 10 9 15 15 C 1.50702 * 109.47080 * 174.99903 * 14 11 10 16 16 H 1.07999 * 119.99971 * 359.97438 * 15 14 11 17 17 C 1.37878 * 119.99926 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00066 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99927 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47185 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47364 * 119.99984 * 19 17 15 22 22 H 1.48497 * 109.46646 * 240.00138 * 19 17 15 23 23 H 1.09001 * 109.46949 * 59.99676 * 1 2 3 24 24 H 1.08996 * 109.47320 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46668 * 300.00022 * 1 2 3 26 26 H 1.08996 * 109.46961 * 240.00208 * 2 1 3 27 27 H 1.09001 * 109.46949 * 120.00323 * 2 1 3 28 28 H 1.08002 * 126.75726 * 179.83217 * 6 5 4 29 29 H 1.09000 * 109.46761 * 34.98229 * 8 7 3 30 30 H 1.09001 * 109.47170 * 154.98159 * 8 7 3 31 31 H 1.00895 * 110.99792 * 303.95153 * 9 8 7 32 32 H 1.09000 * 109.47487 * 299.99956 * 10 9 8 33 33 H 1.09004 * 109.47458 * 60.00178 * 10 9 8 34 34 H 1.08993 * 109.46937 * 60.00592 * 13 11 10 35 35 H 1.09006 * 109.46972 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47272 * 300.00110 * 13 11 10 37 37 H 1.09005 * 109.47016 * 294.99603 * 14 11 10 38 38 H 1.09001 * 109.47222 * 54.99651 * 14 11 10 39 39 H 0.96999 * 119.99808 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2702 2.0921 -1.0430 5 7 2.6778 3.2615 -0.6951 6 6 2.7080 3.3300 0.6405 7 6 2.2826 2.1286 1.0966 8 6 2.1345 1.7079 2.5360 9 7 0.7471 1.9222 2.9685 10 6 0.5647 1.5216 4.3700 11 6 -0.8890 1.7596 4.7834 12 1 -1.1564 2.7985 4.5901 13 6 -1.8061 0.8384 3.9764 14 6 -1.0505 1.4607 6.2752 15 6 -2.4503 1.8118 6.7092 16 1 -3.1542 2.2089 5.9928 17 6 -2.8324 1.6261 8.0210 18 7 -1.9753 1.1421 8.8933 19 14 -4.5677 2.0607 8.5588 20 1 -5.3303 2.5822 7.3962 21 1 -5.2402 0.8474 9.0886 22 1 -4.5118 3.0986 9.6193 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.0081 4.1785 1.2375 29 1 2.3865 0.6519 2.6336 30 1 2.8049 2.3004 3.1586 31 1 0.4684 2.8816 2.8272 32 1 0.8056 0.4643 4.4800 33 1 1.2242 2.1125 5.0056 34 1 -1.5388 -0.2004 4.1698 35 1 -2.8418 1.0083 4.2706 36 1 -1.6911 1.0515 2.9136 37 1 -0.8694 0.4009 6.4551 38 1 -0.3342 2.0534 6.8442 39 1 -2.2440 1.0118 9.8161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602720937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:45 Heat of formation + Delta-G solvation = 54.958457 kcal Electronic energy + Delta-G solvation = -18456.402790 eV Core-core repulsion = 15627.631320 eV Total energy + Delta-G solvation = -2828.771470 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.22769 -38.42416 -36.44265 -35.77940 -34.12916 -31.97857 -31.56595 -28.90794 -27.55028 -25.84397 -25.23489 -23.92545 -23.32304 -21.49817 -20.65404 -18.51374 -18.25261 -17.30111 -16.62327 -16.54346 -15.98616 -15.66886 -15.42356 -14.98893 -14.75024 -14.39631 -14.03176 -13.82060 -13.53768 -13.27288 -13.05873 -12.87246 -12.77594 -12.62210 -12.53355 -12.24708 -12.13617 -11.92268 -11.76600 -11.44602 -11.07894 -11.03643 -10.91077 -10.51467 -10.20223 -9.35356 -8.16115 -6.24075 0.59305 1.40174 1.41797 1.51238 1.53576 1.56783 2.43178 3.18026 3.22876 3.47135 3.69143 3.95534 4.04135 4.08365 4.22130 4.30493 4.37489 4.50515 4.58299 4.60518 4.76518 4.82354 4.94872 4.98661 5.04474 5.05818 5.24999 5.31858 5.33554 5.51241 5.56623 5.59490 5.69430 5.85602 5.93183 6.01218 6.34132 6.40236 6.92795 7.44285 7.52212 8.95819 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039450 B = 0.003826 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.583288 B = 7316.950658 C = 7545.846360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.270 5.270 4 N -0.119 5.119 5 N -0.310 5.310 6 C -0.057 4.057 7 C -0.002 4.002 8 C 0.134 3.866 9 N -0.680 5.680 10 C 0.080 3.920 11 C -0.075 4.075 12 H 0.050 0.950 13 C -0.112 4.112 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.955 3.045 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.281 1.281 23 H 0.049 0.951 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.209 0.791 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.344 0.656 32 H 0.072 0.928 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.031 0.969 36 H 0.065 0.935 37 H -0.007 1.007 38 H -0.012 1.012 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.232 -2.530 -14.833 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.014 4.014 3 N -0.065 5.065 4 N -0.098 5.098 5 N -0.174 5.174 6 C -0.216 4.216 7 C -0.136 4.136 8 C 0.003 3.997 9 N -0.312 5.312 10 C -0.048 4.048 11 C -0.093 4.093 12 H 0.068 0.932 13 C -0.170 4.170 14 C -0.006 4.006 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.781 3.219 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.207 1.207 23 H 0.068 0.932 24 H 0.120 0.880 25 H 0.088 0.912 26 H 0.134 0.866 27 H 0.141 0.859 28 H 0.225 0.775 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.012 0.988 38 H 0.006 0.994 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.035 -3.180 -16.507 18.632 hybrid contribution -0.457 0.863 2.307 2.505 sum 7.579 -2.318 -14.200 16.262 Atomic orbital electron populations 1.22136 0.92548 1.04784 1.02960 1.22413 0.96849 0.75138 1.06972 1.47695 1.40591 1.14304 1.03880 1.78201 1.18882 0.99557 1.13159 1.75020 1.17262 1.11080 1.14010 1.23867 1.06874 0.99344 0.91496 1.22328 1.05940 0.93086 0.92239 1.20376 0.90609 1.02977 0.85735 1.60485 1.20666 1.29081 1.20953 1.21847 0.95694 1.00537 0.86759 1.21004 0.94328 0.98873 0.95145 0.93177 1.21482 0.98204 0.98235 0.99039 1.19022 0.94993 0.94807 0.91776 1.21685 0.98791 1.41522 0.94503 0.92374 1.25878 1.01265 0.95434 0.97168 1.70090 1.36667 1.46978 1.03769 0.85539 0.80141 0.77871 0.78365 1.18772 1.20609 1.20687 0.93212 0.87954 0.91226 0.86566 0.85852 0.77460 0.88388 0.90699 0.83756 0.90941 0.95488 0.94137 0.95014 0.91570 0.98834 0.99369 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 71.98 0.74 -1.77 16 2 C 0.11 1.47 6.90 86.38 0.60 2.07 16 3 N -0.27 -5.70 3.34 -334.40 -1.12 -6.82 16 4 N -0.12 -3.26 13.16 37.02 0.49 -2.77 16 5 N -0.31 -8.83 12.41 -58.25 -0.72 -9.55 16 6 C -0.06 -1.26 11.99 83.73 1.00 -0.26 16 7 C 0.00 -0.04 6.51 41.36 0.27 0.23 16 8 C 0.13 2.26 5.91 85.56 0.51 2.77 16 9 N -0.68 -14.61 5.92 -517.94 -3.07 -17.67 16 10 C 0.08 2.23 5.07 86.30 0.44 2.67 16 11 C -0.07 -2.73 2.48 -10.79 -0.03 -2.76 16 12 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 13 C -0.11 -3.85 8.89 71.98 0.64 -3.21 16 14 C 0.03 1.56 4.45 29.85 0.13 1.69 16 15 C -0.53 -28.78 8.41 25.60 0.22 -28.57 16 16 H 0.06 3.09 7.06 -2.91 -0.02 3.07 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 18 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 19 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 26 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.12 1.22 7.22 -2.39 -0.02 1.20 16 28 H 0.21 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.10 1.42 7.32 -2.39 -0.02 1.41 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.34 7.57 8.72 -89.70 -0.78 6.79 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.03 1.21 6.95 -2.38 -0.02 1.19 16 36 H 0.07 1.92 7.75 -2.39 -0.02 1.90 16 37 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 38 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -67.58 326.22 3.10 -64.47 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.24 Total: 8.69 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 4.97 Total: -26.67 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -4.14 Total: -92.13 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -67.58 3.10 -64.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602720937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.433 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds