Wall clock time and date at job start Sun Mar 29 2020 23:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47192 * 2 1 4 4 N 1.28712 * 125.87564 * 270.18029 * 3 2 1 5 5 N 1.28629 * 110.18311 * 180.24007 * 4 3 2 6 6 C 1.33773 * 108.88457 * 359.75279 * 5 4 3 7 7 C 1.35315 * 125.86314 * 90.00131 * 3 2 1 8 8 C 1.50697 * 126.91553 * 0.03810 * 7 3 2 9 9 N 1.46898 * 109.47119 * 274.70865 * 8 7 3 10 10 C 1.46903 * 111.00043 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47368 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46617 * 55.00168 * 11 10 9 13 13 C 1.53005 * 109.47107 * 295.00343 * 11 10 9 14 14 C 1.53002 * 109.47329 * 174.99975 * 11 10 9 15 15 C 1.50696 * 109.46919 * 185.00033 * 14 11 10 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47364 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.46883 * 120.00040 * 19 17 15 22 22 H 1.48497 * 109.46870 * 239.99850 * 19 17 15 23 23 H 1.09002 * 109.46957 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47159 * 299.99368 * 1 2 3 25 25 H 1.08997 * 109.47433 * 59.99543 * 1 2 3 26 26 H 1.09001 * 109.47159 * 240.00632 * 2 1 3 27 27 H 1.08997 * 109.47433 * 120.00457 * 2 1 3 28 28 H 1.08005 * 126.75019 * 179.97438 * 6 5 4 29 29 H 1.09006 * 109.47218 * 154.70683 * 8 7 3 30 30 H 1.09009 * 109.47117 * 34.71051 * 8 7 3 31 31 H 1.00898 * 111.00104 * 56.04644 * 9 8 7 32 32 H 1.09008 * 109.46872 * 60.00082 * 10 9 8 33 33 H 1.09005 * 109.47368 * 300.00424 * 10 9 8 34 34 H 1.08997 * 109.46686 * 299.99929 * 13 11 10 35 35 H 1.09001 * 109.47004 * 59.99757 * 13 11 10 36 36 H 1.08997 * 109.47105 * 179.97438 * 13 11 10 37 37 H 1.09000 * 109.46497 * 65.00298 * 14 11 10 38 38 H 1.08999 * 109.46623 * 305.00362 * 14 11 10 39 39 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2666 2.0934 -1.0429 5 7 2.6852 3.2589 -0.6950 6 6 2.7122 3.3284 0.6406 7 6 2.2826 2.1286 1.0966 8 6 2.1346 1.7077 2.5360 9 7 0.7488 1.9279 2.9706 10 6 0.5666 1.5273 4.3722 11 6 -0.8854 1.7714 4.7879 12 1 -1.5526 1.2547 4.0979 13 6 -1.1800 3.2725 4.7543 14 6 -1.1065 1.2398 6.2054 15 6 -2.5633 1.3684 6.5686 16 1 -3.2617 1.7878 5.8595 17 6 -3.0046 0.9516 7.8067 18 7 -2.1530 0.4469 8.6725 19 14 -4.8104 1.1117 8.2571 20 1 -5.5529 1.7126 7.1201 21 1 -5.3666 -0.2321 8.5574 22 1 -4.9470 1.9823 9.4523 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.0173 4.1751 1.2376 29 1 2.8085 2.2969 3.1580 30 1 2.3821 0.6505 2.6327 31 1 0.0998 1.4432 2.3691 32 1 1.2297 2.1150 5.0072 33 1 0.8031 0.4688 4.4813 34 1 -0.5128 3.7891 5.4442 35 1 -1.0226 3.6512 3.7444 36 1 -2.2146 3.4464 5.0500 37 1 -0.5046 1.8167 6.9076 38 1 -0.8119 0.1913 6.2502 39 1 -1.2152 0.3641 8.4387 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602720938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:48 Heat of formation + Delta-G solvation = 73.929016 kcal Electronic energy + Delta-G solvation = -18462.250623 eV Core-core repulsion = 15634.301778 eV Total energy + Delta-G solvation = -2827.948845 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.39087 -37.34533 -35.72296 -34.54196 -32.46415 -30.96802 -30.84543 -26.85287 -26.31226 -24.73831 -24.24593 -22.63889 -22.40465 -20.57717 -19.48051 -17.55827 -16.78578 -16.50742 -15.86871 -15.30789 -14.69740 -14.53229 -14.21796 -13.74764 -13.64232 -13.28921 -13.24827 -12.83911 -12.51931 -11.99350 -11.91332 -11.70630 -11.61357 -11.44180 -11.04510 -10.97740 -10.71899 -10.34230 -10.25077 -10.13780 -9.91169 -9.59632 -9.28215 -8.52578 -8.43088 -8.33399 -6.36707 -4.05284 1.41139 2.14291 2.49068 3.42646 3.46266 3.59508 4.04553 4.10818 4.39115 4.43475 4.53196 4.55969 4.67648 4.88935 5.13232 5.16774 5.30613 5.39227 5.42886 5.46734 5.59019 5.67721 5.72794 5.92773 6.08397 6.19862 6.31536 6.41949 6.49455 6.77718 6.95015 7.01896 7.09294 7.29320 7.35955 7.52058 8.21795 8.40050 8.46766 8.88433 9.66187 11.03816 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037254 B = 0.003858 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.419577 B = 7255.163709 C = 7465.242515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 N -0.287 5.287 4 N -0.090 5.090 5 N -0.274 5.274 6 C -0.034 4.034 7 C -0.010 4.010 8 C 0.130 3.870 9 N -0.680 5.680 10 C 0.062 3.938 11 C -0.075 4.075 12 H 0.054 0.946 13 C -0.123 4.123 14 C 0.014 3.986 15 C -0.595 4.595 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 1.072 2.928 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.287 1.287 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.189 0.811 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.335 0.665 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.008 0.992 38 H 0.003 0.997 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.601 -1.080 -14.666 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 N -0.082 5.082 4 N -0.069 5.069 5 N -0.139 5.139 6 C -0.192 4.192 7 C -0.142 4.142 8 C -0.001 4.001 9 N -0.313 5.313 10 C -0.066 4.066 11 C -0.094 4.094 12 H 0.072 0.928 13 C -0.181 4.181 14 C -0.023 4.023 15 C -0.633 4.633 16 H 0.069 0.931 17 C -0.190 4.190 18 N -0.553 5.553 19 Si 0.901 3.099 20 H -0.215 1.215 21 H -0.214 1.214 22 H -0.214 1.214 23 H 0.106 0.894 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.206 0.794 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.154 0.846 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.021 0.979 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.620 -0.672 -14.869 16.721 hybrid contribution 1.089 -0.873 -0.079 1.398 sum 8.708 -1.545 -14.948 17.369 Atomic orbital electron populations 1.22232 0.92622 1.04232 1.03965 1.22115 0.96676 0.76928 1.05673 1.47437 1.42840 1.13328 1.04622 1.78257 1.17422 0.99331 1.11889 1.75079 1.15826 1.10393 1.12644 1.23364 1.06066 0.98051 0.91687 1.22173 1.07000 0.93553 0.91487 1.20375 0.93112 0.99335 0.87243 1.60646 1.02758 1.63249 1.04654 1.22241 0.99834 0.97570 0.86984 1.21068 0.91945 0.97026 0.99357 0.92790 1.21589 1.01540 0.95280 0.99656 1.19255 0.97714 0.94841 0.90527 1.22077 0.93492 1.45018 1.02698 0.93109 1.25820 1.06251 0.93838 0.93105 1.70727 1.04890 1.42616 1.37072 0.83505 0.74360 0.76565 0.75515 1.21528 1.21440 1.21364 0.89394 0.91368 0.90973 0.87414 0.88037 0.79366 0.87957 0.94178 0.84565 0.90973 0.95534 0.94058 0.93789 0.92544 0.97362 0.97878 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.24 37.15 0.38 -0.88 16 2 C 0.11 0.79 6.90 -4.05 -0.03 0.76 16 3 N -0.29 -3.20 3.34 -57.05 -0.19 -3.39 16 4 N -0.09 -1.25 13.16 60.35 0.79 -0.45 16 5 N -0.27 -4.02 12.41 30.24 0.38 -3.64 16 6 C -0.03 -0.42 11.99 -17.73 -0.21 -0.63 16 7 C -0.01 -0.11 6.51 -82.09 -0.53 -0.65 16 8 C 0.13 1.35 5.91 -4.98 -0.03 1.32 16 9 N -0.68 -8.71 5.94 -115.05 -0.68 -9.40 16 10 C 0.06 0.95 5.07 -3.82 -0.02 0.93 16 11 C -0.07 -1.45 2.48 -90.62 -0.22 -1.67 16 12 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 14 C 0.01 0.34 3.76 -27.88 -0.10 0.24 16 15 C -0.59 -16.41 8.41 -34.44 -0.29 -16.70 16 16 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 17 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 18 N -0.92 -27.69 13.65 55.43 0.76 -26.93 16 19 Si 1.07 25.13 29.90 -169.99 -5.08 20.05 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.60 5.91 -51.93 -0.31 0.29 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.59 7.22 -51.93 -0.37 0.21 16 28 H 0.19 1.84 8.06 -52.48 -0.42 1.42 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.37 7.31 -51.92 -0.38 -0.01 16 31 H 0.34 4.17 6.49 -39.29 -0.25 3.92 16 32 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 36 H 0.06 1.16 6.95 -51.93 -0.36 0.80 16 37 H 0.01 0.21 8.00 -51.93 -0.42 -0.21 16 38 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 39 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -32.38 320.47 -6.21 -38.59 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.18 Total: -0.65 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -0.83 Total: -19.00 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 1.05 Total: -43.82 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.38 -6.21 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602720938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.522 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds