Wall clock time and date at job start Sun Mar 29 2020 23:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47192 * 2 1 4 4 N 1.28712 * 125.87564 * 270.18029 * 3 2 1 5 5 N 1.28629 * 110.18311 * 180.24007 * 4 3 2 6 6 C 1.33773 * 108.88457 * 359.75279 * 5 4 3 7 7 C 1.35315 * 125.86314 * 90.00131 * 3 2 1 8 8 C 1.50697 * 126.91553 * 0.03810 * 7 3 2 9 9 N 1.46898 * 109.47119 * 274.70865 * 8 7 3 10 10 C 1.46903 * 111.00043 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47368 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46617 * 55.00168 * 11 10 9 13 13 C 1.53005 * 109.47107 * 295.00343 * 11 10 9 14 14 C 1.53002 * 109.47329 * 174.99975 * 11 10 9 15 15 C 1.50696 * 109.46919 * 185.00033 * 14 11 10 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47364 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.46883 * 120.00040 * 19 17 15 22 22 H 1.48497 * 109.46870 * 239.99850 * 19 17 15 23 23 H 1.09002 * 109.46957 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47159 * 299.99368 * 1 2 3 25 25 H 1.08997 * 109.47433 * 59.99543 * 1 2 3 26 26 H 1.09001 * 109.47159 * 240.00632 * 2 1 3 27 27 H 1.08997 * 109.47433 * 120.00457 * 2 1 3 28 28 H 1.08005 * 126.75019 * 179.97438 * 6 5 4 29 29 H 1.09006 * 109.47218 * 154.70683 * 8 7 3 30 30 H 1.09009 * 109.47117 * 34.71051 * 8 7 3 31 31 H 1.00898 * 111.00104 * 56.04644 * 9 8 7 32 32 H 1.09008 * 109.46872 * 60.00082 * 10 9 8 33 33 H 1.09005 * 109.47368 * 300.00424 * 10 9 8 34 34 H 1.08997 * 109.46686 * 299.99929 * 13 11 10 35 35 H 1.09001 * 109.47004 * 59.99757 * 13 11 10 36 36 H 1.08997 * 109.47105 * 179.97438 * 13 11 10 37 37 H 1.09000 * 109.46497 * 65.00298 * 14 11 10 38 38 H 1.08999 * 109.46623 * 305.00362 * 14 11 10 39 39 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2666 2.0934 -1.0429 5 7 2.6852 3.2589 -0.6950 6 6 2.7122 3.3284 0.6406 7 6 2.2826 2.1286 1.0966 8 6 2.1346 1.7077 2.5360 9 7 0.7488 1.9279 2.9706 10 6 0.5666 1.5273 4.3722 11 6 -0.8854 1.7714 4.7879 12 1 -1.5526 1.2547 4.0979 13 6 -1.1800 3.2725 4.7543 14 6 -1.1065 1.2398 6.2054 15 6 -2.5633 1.3684 6.5686 16 1 -3.2617 1.7878 5.8595 17 6 -3.0046 0.9516 7.8067 18 7 -2.1530 0.4469 8.6725 19 14 -4.8104 1.1117 8.2571 20 1 -5.5529 1.7126 7.1201 21 1 -5.3666 -0.2321 8.5574 22 1 -4.9470 1.9823 9.4523 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.0173 4.1751 1.2376 29 1 2.8085 2.2969 3.1580 30 1 2.3821 0.6505 2.6327 31 1 0.0998 1.4432 2.3691 32 1 1.2297 2.1150 5.0072 33 1 0.8031 0.4688 4.4813 34 1 -0.5128 3.7891 5.4442 35 1 -1.0226 3.6512 3.7444 36 1 -2.2146 3.4464 5.0500 37 1 -0.5046 1.8167 6.9076 38 1 -0.8119 0.1913 6.2502 39 1 -1.2152 0.3641 8.4387 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602720938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:47 Heat of formation + Delta-G solvation = 52.088175 kcal Electronic energy + Delta-G solvation = -18463.197713 eV Core-core repulsion = 15634.301778 eV Total energy + Delta-G solvation = -2828.895935 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.29330 -38.62070 -36.67004 -35.93326 -34.21226 -32.02511 -31.70696 -28.55653 -27.65028 -25.83917 -25.36121 -24.07332 -23.52099 -21.48474 -20.96259 -18.84726 -18.37479 -17.43761 -16.87023 -16.25582 -15.88771 -15.80661 -15.53871 -15.03875 -14.95803 -14.73777 -13.94652 -13.90081 -13.62450 -13.47970 -13.18836 -12.96863 -12.84904 -12.57411 -12.49603 -12.44262 -11.97118 -11.93192 -11.78001 -11.57467 -11.33951 -11.11968 -10.57620 -10.50562 -10.23498 -9.45101 -8.63043 -6.32073 0.51724 1.40271 1.53351 1.53995 1.62100 1.78202 2.57869 3.10947 3.20623 3.38665 3.58200 3.74991 3.85477 4.02554 4.07930 4.17525 4.23240 4.39825 4.44647 4.50133 4.65852 4.69959 4.79695 4.82708 4.87734 4.92801 5.07732 5.10657 5.21880 5.35130 5.36576 5.49923 5.60371 5.65950 5.88464 6.10365 6.24987 6.30035 6.66075 7.46377 7.47786 8.78116 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037254 B = 0.003858 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.419577 B = 7255.163709 C = 7465.242515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.279 5.279 4 N -0.115 5.115 5 N -0.309 5.309 6 C -0.043 4.043 7 C -0.008 4.008 8 C 0.135 3.865 9 N -0.683 5.683 10 C 0.077 3.923 11 C -0.068 4.068 12 H 0.051 0.949 13 C -0.115 4.115 14 C 0.016 3.984 15 C -0.604 4.604 16 H 0.049 0.951 17 C -0.041 4.041 18 N -0.943 5.943 19 Si 1.117 2.883 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.281 1.281 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.208 0.792 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.338 0.662 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.032 0.968 37 H -0.011 1.011 38 H -0.013 1.013 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.501 -1.463 -15.242 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.022 4.022 3 N -0.075 5.075 4 N -0.093 5.093 5 N -0.173 5.173 6 C -0.202 4.202 7 C -0.141 4.141 8 C 0.005 3.995 9 N -0.316 5.316 10 C -0.051 4.051 11 C -0.087 4.087 12 H 0.069 0.931 13 C -0.172 4.172 14 C -0.022 4.022 15 C -0.642 4.642 16 H 0.067 0.933 17 C -0.238 4.238 18 N -0.581 5.581 19 Si 0.939 3.061 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.207 1.207 23 H 0.129 0.871 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.225 0.775 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.007 0.993 38 H 0.006 0.994 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.533 -1.061 -15.488 17.256 hybrid contribution 1.140 -0.781 0.073 1.384 sum 8.673 -1.842 -15.415 17.783 Atomic orbital electron populations 1.22212 0.92529 1.05307 1.02588 1.22508 0.96702 0.75375 1.07618 1.47753 1.41521 1.14184 1.04019 1.78190 1.18520 0.99655 1.12965 1.75038 1.17100 1.11153 1.14006 1.23817 1.05958 0.99184 0.91232 1.22300 1.06586 0.93305 0.91888 1.20427 0.91674 1.00874 0.86560 1.60535 1.04383 1.63444 1.03287 1.21903 0.96700 0.97986 0.88544 1.20899 0.94931 0.96906 0.95999 0.93096 1.21492 0.99944 0.94993 1.00766 1.19189 0.95748 0.93786 0.93429 1.22485 0.95126 1.44018 1.02603 0.93259 1.27280 1.09827 0.93151 0.93496 1.70859 1.04620 1.44733 1.37897 0.82926 0.69937 0.77142 0.76068 1.19596 1.20530 1.20729 0.87119 0.92713 0.92247 0.85805 0.85857 0.77515 0.86733 0.92100 0.84207 0.90809 0.95035 0.94254 0.91648 0.94850 0.99257 0.99429 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 71.98 0.74 -1.39 16 2 C 0.10 1.20 6.90 86.38 0.60 1.79 16 3 N -0.28 -5.73 3.34 -334.41 -1.12 -6.84 16 4 N -0.11 -3.09 13.16 37.02 0.49 -2.60 16 5 N -0.31 -8.86 12.41 -58.25 -0.72 -9.58 16 6 C -0.04 -1.00 11.99 83.73 1.00 0.00 16 7 C -0.01 -0.15 6.51 41.35 0.27 0.11 16 8 C 0.14 2.38 5.91 85.56 0.51 2.89 16 9 N -0.68 -15.70 5.94 -517.90 -3.08 -18.78 16 10 C 0.08 2.21 5.07 86.30 0.44 2.64 16 11 C -0.07 -2.57 2.48 -10.79 -0.03 -2.60 16 12 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 13 C -0.11 -4.20 8.89 71.98 0.64 -3.56 16 14 C 0.02 0.79 3.76 29.85 0.11 0.90 16 15 C -0.60 -33.45 8.41 25.60 0.22 -33.23 16 16 H 0.05 2.69 7.06 -2.91 -0.02 2.67 16 17 C -0.04 -2.31 5.46 84.66 0.46 -1.85 16 18 N -0.94 -57.60 13.65 21.45 0.29 -57.31 16 19 Si 1.12 49.98 29.90 68.60 2.05 52.03 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.85 5.91 -2.39 -0.01 0.84 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.12 1.00 7.22 -2.39 -0.02 0.98 16 28 H 0.21 3.69 8.06 -2.91 -0.02 3.66 16 29 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.06 0.87 7.31 -2.38 -0.02 0.86 16 31 H 0.34 7.58 6.49 -89.70 -0.58 6.99 16 32 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 2.10 7.75 -2.39 -0.02 2.09 16 36 H 0.03 1.34 6.95 -2.39 -0.02 1.33 16 37 H -0.01 -0.57 8.00 -2.39 -0.02 -0.59 16 38 H -0.01 -0.65 8.01 -2.39 -0.02 -0.67 16 39 H 0.26 15.74 7.22 -92.71 -0.67 15.07 16 Total: -1.00 -70.04 320.47 3.41 -66.63 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.55 Total: 10.74 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 4.95 Total: -34.29 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -4.14 Total: -95.11 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -70.04 3.41 -66.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602720938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.718 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds