Wall clock time and date at job start Sun Mar 29 2020 23:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00157 * 2 1 4 4 C 1.52997 * 109.46696 * 76.04747 * 3 2 1 5 5 C 1.50699 * 115.55126 * 54.34927 * 4 3 2 6 6 H 1.08010 * 120.00091 * 215.55982 * 5 4 3 7 7 C 1.37872 * 120.00237 * 35.28497 * 5 4 3 8 8 N 1.31522 * 119.99859 * 10.29365 * 7 5 4 9 9 Si 1.86800 * 120.00401 * 190.30089 * 7 5 4 10 10 H 1.48499 * 109.47545 * 89.99664 * 9 7 5 11 11 H 1.48497 * 109.47383 * 209.99981 * 9 7 5 12 12 H 1.48504 * 109.46894 * 329.99534 * 9 7 5 13 13 C 1.52999 * 117.49807 * 200.01613 * 4 3 2 14 14 C 1.52998 * 117.50041 * 268.67725 * 4 3 2 15 15 C 1.46907 * 110.99727 * 236.04805 * 2 1 3 16 16 H 1.09005 * 110.43280 * 176.41206 * 15 2 1 17 17 C 1.54629 * 110.48747 * 298.95527 * 15 2 1 18 18 C 1.54479 * 101.76502 * 93.88137 * 17 15 2 19 19 N 1.46768 * 105.47148 * 25.41450 * 18 17 15 20 20 C 1.46504 * 124.34702 * 162.98199 * 19 18 17 21 21 C 1.34415 * 111.30504 * 342.98681 * 19 18 17 22 22 O 1.21283 * 124.94530 * 180.44651 * 21 19 18 23 23 H 1.09001 * 109.46847 * 66.67533 * 1 2 3 24 24 H 1.08993 * 109.47321 * 186.67304 * 1 2 3 25 25 H 1.09000 * 109.46990 * 306.68025 * 1 2 3 26 26 H 1.08999 * 109.47383 * 316.04931 * 3 2 1 27 27 H 1.08999 * 109.47299 * 196.04161 * 3 2 1 28 28 H 0.96995 * 119.99494 * 184.98390 * 8 7 5 29 29 H 1.08996 * 117.50088 * 215.00042 * 13 4 3 30 30 H 1.08994 * 117.49952 * 0.02658 * 13 4 3 31 31 H 1.09002 * 117.49482 * 359.97438 * 14 4 3 32 32 H 1.09000 * 117.50515 * 144.97576 * 14 4 3 33 33 H 1.09000 * 110.96870 * 211.99832 * 17 15 2 34 34 H 1.09002 * 110.96748 * 335.76077 * 17 15 2 35 35 H 1.08997 * 110.24622 * 144.41160 * 18 17 15 36 36 H 1.08996 * 110.24578 * 266.33320 * 18 17 15 37 37 H 1.09006 * 109.46696 * 90.00117 * 20 19 18 38 38 H 1.08998 * 109.46752 * 209.99807 * 20 19 18 39 39 H 1.09003 * 109.47272 * 330.00065 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8535 1.9721 1.3999 5 6 2.4670 1.1683 2.5174 6 1 1.9907 1.1394 3.4864 7 6 3.6332 0.4653 2.3013 8 7 4.3184 0.6527 1.1944 9 14 4.2399 -0.7534 3.5803 10 1 3.6708 -2.0951 3.2949 11 1 5.7224 -0.8242 3.5327 12 1 3.8087 -0.3098 4.9304 13 6 1.8937 3.4967 1.5219 14 6 0.5717 2.7480 1.7091 15 6 1.9954 -0.7660 -1.1377 16 1 3.0836 -0.7074 -1.1651 17 6 1.5347 -2.2398 -1.0574 18 6 0.2588 -2.2189 -1.9280 19 7 0.4372 -1.0968 -2.8571 20 6 -0.3373 -0.9105 -4.0866 21 6 1.4025 -0.2620 -2.4351 22 8 1.7474 0.7485 -3.0102 23 1 -0.3633 0.4069 -0.9437 24 1 -0.3633 -1.0206 0.1194 25 1 -0.3633 0.6139 0.8242 26 1 1.4351 1.9758 -0.7132 27 1 3.0478 1.3567 -0.2840 28 1 5.0986 0.1071 1.0089 29 1 2.3637 3.9183 2.4104 30 1 2.0207 4.0717 0.6048 31 1 -0.1703 2.8309 0.9149 32 1 0.1717 2.6769 2.7206 33 1 2.2853 -2.9068 -1.4814 34 1 1.3015 -2.5202 -0.0302 35 1 0.1633 -3.1539 -2.4799 36 1 -0.6207 -2.0578 -1.3046 37 1 -1.2279 -0.3207 -3.8691 38 1 0.2724 -0.3892 -4.8246 39 1 -0.6328 -1.8829 -4.4808 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602777656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:05 Heat of formation + Delta-G solvation = 16.990566 kcal Electronic energy + Delta-G solvation = -20130.993788 eV Core-core repulsion = 17268.283156 eV Total energy + Delta-G solvation = -2862.710632 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.49997 -37.10147 -36.14361 -34.58648 -31.96390 -31.21827 -27.39614 -26.56618 -26.29900 -25.20459 -22.64691 -21.08993 -20.87453 -19.05847 -18.65830 -16.59904 -16.45478 -15.93621 -15.33554 -14.54228 -14.18302 -14.02753 -13.76686 -13.44335 -12.89141 -12.81910 -12.59327 -12.37529 -12.26424 -12.02925 -11.63920 -11.44228 -11.02074 -10.82603 -10.64735 -10.61613 -10.42039 -10.35403 -9.91452 -9.67650 -9.20679 -8.95727 -8.55166 -8.50599 -7.90601 -7.25912 -5.85273 -3.86968 2.93703 3.23206 3.38919 3.45278 3.48171 4.53414 4.60098 4.76573 4.83515 5.12547 5.21341 5.34264 5.37000 5.48295 5.54903 5.70378 5.71603 5.90342 6.03111 6.05930 6.18929 6.26097 6.40533 6.46993 6.56617 6.67167 6.72294 6.76825 6.90718 7.04162 7.23157 7.31292 7.41057 7.62144 7.99633 8.11056 8.17771 8.51859 8.61500 9.07052 9.72880 11.17695 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022656 B = 0.008606 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.555295 B = 3252.641469 C = 3848.470523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.469 5.469 3 C 0.101 3.899 4 C 0.068 3.932 5 C -0.469 4.469 6 H 0.054 0.946 7 C 0.087 3.913 8 N -0.876 5.876 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.279 1.279 13 C -0.206 4.206 14 C -0.218 4.218 15 C 0.062 3.938 16 H 0.118 0.882 17 C -0.128 4.128 18 C 0.101 3.899 19 N -0.629 5.629 20 C 0.097 3.903 21 C 0.488 3.512 22 O -0.530 6.530 23 H 0.008 0.992 24 H 0.059 0.941 25 H 0.076 0.924 26 H -0.003 1.003 27 H 0.118 0.882 28 H 0.257 0.743 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 -7.551 -6.837 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.192 5.192 3 C -0.025 4.025 4 C 0.067 3.933 5 C -0.506 4.506 6 H 0.072 0.928 7 C -0.115 4.115 8 N -0.514 5.514 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.244 4.244 14 C -0.256 4.256 15 C -0.051 4.051 16 H 0.136 0.864 17 C -0.167 4.167 18 C -0.022 4.022 19 N -0.366 5.366 20 C -0.045 4.045 21 C 0.274 3.726 22 O -0.404 6.404 23 H 0.026 0.974 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.015 0.985 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.266 -7.237 -6.841 12.328 hybrid contribution -0.240 -0.256 -0.189 0.399 sum -7.506 -7.493 -7.030 12.725 Atomic orbital electron populations 1.22647 0.89601 1.01156 0.99796 1.62121 1.05527 1.16658 1.34847 1.21797 1.02124 0.84188 0.94413 1.18948 0.92283 0.87946 0.94136 1.20298 1.06555 1.28427 0.95354 0.92824 1.24719 0.95430 0.96032 0.95330 1.69876 1.17650 1.38305 1.25573 0.86709 0.77420 0.82349 0.82066 1.20575 1.21738 1.20368 1.22962 1.01033 0.99993 1.00458 1.22942 0.91521 1.11291 0.99828 1.22665 1.02115 0.93898 0.86385 0.86375 1.22682 0.96135 0.96277 1.01564 1.22239 0.99442 0.88880 0.91669 1.48354 1.37954 1.26684 1.23601 1.21446 0.95592 1.01348 0.86117 1.22519 0.79451 0.83091 0.87525 1.90673 1.63662 1.24878 1.61230 0.97390 0.92287 0.90494 0.98533 0.86384 0.93317 0.90425 0.91957 0.92020 0.90868 0.90121 0.87991 0.91090 0.91011 0.93199 0.91127 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.01 60.07 0.48 0.78 16 2 N -0.47 -9.91 4.26 -234.89 -1.00 -10.92 16 3 C 0.10 2.46 3.47 -3.83 -0.01 2.45 16 4 C 0.07 1.69 1.70 -155.66 -0.26 1.43 16 5 C -0.47 -12.62 8.73 -34.44 -0.30 -12.92 16 6 H 0.05 1.46 7.83 -52.48 -0.41 1.05 16 7 C 0.09 2.32 5.17 -17.82 -0.09 2.22 16 8 N -0.88 -23.68 10.74 55.43 0.60 -23.08 16 9 Si 0.89 20.79 29.55 -169.99 -5.02 15.77 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C -0.21 -4.89 9.96 -26.69 -0.27 -5.15 16 14 C -0.22 -4.89 8.51 -26.69 -0.23 -5.12 16 15 C 0.06 1.17 3.13 -67.72 -0.21 0.96 16 16 H 0.12 2.46 7.93 -51.93 -0.41 2.05 16 17 C -0.13 -1.79 6.25 -25.10 -0.16 -1.95 16 18 C 0.10 1.20 6.46 -3.12 -0.02 1.18 16 19 N -0.63 -9.26 3.03 -180.28 -0.55 -9.81 16 20 C 0.10 1.15 10.96 59.85 0.66 1.80 16 21 C 0.49 9.29 5.65 -10.86 -0.06 9.23 16 22 O -0.53 -12.15 17.02 5.56 0.09 -12.05 16 23 H 0.01 0.15 6.66 -51.93 -0.35 -0.20 16 24 H 0.06 0.92 5.43 -51.93 -0.28 0.64 16 25 H 0.08 1.50 6.06 -51.93 -0.31 1.19 16 26 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16 27 H 0.12 3.20 5.64 -51.93 -0.29 2.91 16 28 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 29 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 30 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.06 1.30 7.91 -51.93 -0.41 0.89 16 32 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.44 7.84 -51.93 -0.41 1.04 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.82 6.22 -51.93 -0.32 0.49 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -30.35 306.27 -7.84 -38.19 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.10 Total: 2.38 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.48 Total: -5.09 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.95 Total: -43.80 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.35 -7.84 -38.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602777656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.183 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds