Wall clock time and date at job start Sun Mar 29 2020 23:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47322 * 2 1 4 4 C 1.53001 * 109.46844 * 240.00232 * 2 1 3 5 5 N 1.46501 * 109.47227 * 185.50469 * 4 2 1 6 6 N 1.40447 * 126.82328 * 269.72179 * 5 4 2 7 7 C 1.30713 * 106.79365 * 179.97438 * 6 5 4 8 8 N 1.33241 * 108.94813 * 359.97438 * 7 6 5 9 9 C 1.30841 * 109.82989 * 359.76401 * 8 7 6 10 10 C 1.50693 * 125.96454 * 180.23831 * 9 8 7 11 11 N 1.46905 * 109.47000 * 267.34885 * 10 9 8 12 12 C 1.46905 * 110.99994 * 182.23259 * 11 10 9 13 13 H 1.08996 * 109.47068 * 34.99325 * 12 11 10 14 14 C 1.52999 * 109.46746 * 274.99838 * 12 11 10 15 15 C 1.50692 * 109.46965 * 154.99809 * 12 11 10 16 16 H 1.07998 * 120.00302 * 32.20079 * 15 12 11 17 17 C 1.37884 * 119.99637 * 212.19470 * 15 12 11 18 18 N 1.31518 * 119.99820 * 177.28114 * 17 15 12 19 19 Si 1.86800 * 120.00062 * 357.28167 * 17 15 12 20 20 H 1.48495 * 109.47079 * 84.88634 * 19 17 15 21 21 H 1.48504 * 109.46806 * 204.88626 * 19 17 15 22 22 H 1.48500 * 109.47150 * 324.88533 * 19 17 15 23 23 H 1.08999 * 109.46483 * 59.99758 * 1 2 3 24 24 H 1.08995 * 109.47151 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46511 * 300.00012 * 1 2 3 26 26 H 1.08999 * 109.47220 * 120.00341 * 2 1 3 27 27 H 1.08997 * 109.47369 * 56.74546 * 3 2 1 28 28 H 1.09006 * 109.47249 * 176.74807 * 3 2 1 29 29 H 1.09002 * 109.47388 * 296.74189 * 3 2 1 30 30 H 1.09004 * 109.47047 * 305.50010 * 4 2 1 31 31 H 1.09003 * 109.47440 * 65.50368 * 4 2 1 32 32 H 1.07998 * 125.52556 * 180.02562 * 7 6 5 33 33 H 1.08994 * 109.47575 * 27.34659 * 10 9 8 34 34 H 1.09005 * 109.47331 * 147.34659 * 10 9 8 35 35 H 1.00902 * 110.99624 * 306.17647 * 11 10 9 36 36 H 1.08997 * 109.47354 * 185.36258 * 14 12 11 37 37 H 1.09008 * 109.47195 * 305.36715 * 14 12 11 38 38 H 1.08997 * 109.47272 * 65.36115 * 14 12 11 39 39 H 0.96996 * 119.99716 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.4990 -0.8371 -1.1850 6 7 4.4390 0.0809 -1.6812 7 6 5.6215 -0.4080 -1.4145 8 7 5.4760 -1.5722 -0.7830 9 6 4.2041 -1.8401 -0.6335 10 6 3.6297 -3.0617 0.0363 11 7 3.3810 -4.1013 -0.9713 12 6 2.7706 -5.2902 -0.3616 13 1 2.1021 -4.9834 0.4428 14 6 3.8681 -6.1936 0.2043 15 6 1.9877 -6.0443 -1.4053 16 1 2.3168 -6.0412 -2.4340 17 6 0.8514 -6.7381 -1.0471 18 7 0.1384 -7.3518 -1.9662 19 14 0.3245 -6.8065 0.7438 20 1 -0.4782 -5.6006 1.0700 21 1 -0.4953 -8.0235 0.9724 22 1 1.5280 -6.8500 1.6126 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6299 1.9729 0.8593 28 1 3.1286 1.4430 0.0583 29 1 1.7253 1.9392 -0.9177 30 1 1.5984 -1.7165 -1.2999 31 1 1.7594 -0.1536 -2.1366 32 1 6.5638 0.0568 -1.6646 33 1 4.3360 -3.4357 0.7775 34 1 2.6924 -2.8000 0.5274 35 1 2.8092 -3.7466 -1.7232 36 1 3.4239 -7.1189 0.5712 37 1 4.5900 -6.4230 -0.5797 38 1 4.3725 -5.6826 1.0243 39 1 -0.6612 -7.8396 -1.7142 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:49 Heat of formation + Delta-G solvation = 74.975726 kcal Electronic energy + Delta-G solvation = -19036.325578 eV Core-core repulsion = 16208.422122 eV Total energy + Delta-G solvation = -2827.903456 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.93217 -36.88064 -36.28758 -32.95033 -32.41865 -31.40377 -29.24531 -27.34741 -26.78568 -25.58732 -24.59196 -21.85189 -20.97131 -19.91440 -19.80904 -17.25721 -16.67109 -15.77135 -15.56081 -15.42271 -14.31711 -14.19467 -13.99994 -13.66081 -13.38818 -13.32449 -12.69517 -12.54839 -12.40650 -12.16411 -12.09961 -11.69882 -11.40080 -11.20541 -11.14330 -11.01574 -10.88152 -10.68371 -10.41837 -9.87548 -9.76002 -9.51339 -9.35169 -9.10071 -8.71351 -7.67868 -6.20721 -4.22614 1.77238 2.42408 3.14708 3.16898 3.27520 3.29587 4.28589 4.29843 4.43767 4.53515 4.73817 4.90395 4.95699 5.08311 5.23021 5.25877 5.38226 5.45462 5.47021 5.64500 5.68639 5.78583 5.84641 5.88927 6.05863 6.10406 6.27114 6.48820 6.61023 6.64306 6.71860 6.78997 6.96945 7.31754 7.50072 7.73885 8.15150 8.33780 8.50382 8.88330 9.41735 10.91933 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.006542 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.563898 B = 4278.970127 C = 5091.838131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.142 4.142 4 C 0.128 3.872 5 N -0.372 5.372 6 N -0.326 5.326 7 C 0.191 3.809 8 N -0.534 5.534 9 C 0.296 3.704 10 C 0.131 3.869 11 N -0.670 5.670 12 C 0.184 3.816 13 H 0.005 0.995 14 C -0.129 4.129 15 C -0.522 4.522 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.893 5.893 19 Si 0.873 3.127 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.261 1.261 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.212 0.788 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.339 0.661 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 14.864 5.248 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.006 3.994 5 N -0.162 5.162 6 N -0.154 5.154 7 C -0.112 4.112 8 N -0.262 5.262 9 C 0.019 3.981 10 C -0.001 4.001 11 N -0.304 5.304 12 C 0.077 3.923 13 H 0.022 0.978 14 C -0.188 4.188 15 C -0.560 4.560 16 H 0.099 0.901 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.700 3.300 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.185 1.185 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.229 0.771 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.158 0.842 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.612 14.968 4.968 15.986 hybrid contribution -1.387 0.114 1.039 1.737 sum 1.225 15.082 6.007 16.280 Atomic orbital electron populations 1.21787 0.93458 1.02760 1.02409 1.21524 0.96768 0.97317 0.97571 1.21792 1.01558 0.94903 1.01704 1.21992 0.74070 1.03261 1.00096 1.50361 1.07315 1.15660 1.42879 1.77951 0.98770 1.15345 1.23347 1.25896 0.96989 0.91496 0.96813 1.70500 1.16419 1.16435 1.22811 1.24463 0.87493 0.91782 0.94322 1.20546 0.98799 0.85992 0.94741 1.60761 1.54190 1.05084 1.10378 1.19552 0.91476 0.87163 0.94139 0.97771 1.21918 0.99160 0.99053 0.98656 1.21024 1.08232 1.30806 0.95946 0.90131 1.25000 0.95781 0.94940 0.97084 1.69893 1.16355 1.33712 1.33071 0.86953 0.79128 0.77769 0.86186 1.20382 1.21281 1.18531 0.92134 0.91792 0.91943 0.90655 0.92715 0.92376 0.92409 0.88123 0.88343 0.77127 0.88044 0.93876 0.84213 0.93443 0.92715 0.96050 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 2 C -0.11 -1.19 3.12 -90.62 -0.28 -1.47 16 3 C -0.14 -1.48 9.02 37.15 0.34 -1.14 16 4 C 0.13 1.57 5.54 -4.04 -0.02 1.54 16 5 N -0.37 -5.53 3.25 -58.34 -0.19 -5.72 16 6 N -0.33 -4.97 11.97 29.29 0.35 -4.62 16 7 C 0.19 2.81 13.03 -91.81 -1.20 1.61 16 8 N -0.53 -9.16 11.19 -11.97 -0.13 -9.29 16 9 C 0.30 4.88 7.47 -155.68 -1.16 3.72 16 10 C 0.13 2.18 5.59 -4.98 -0.03 2.15 16 11 N -0.67 -13.26 6.31 -109.22 -0.69 -13.95 16 12 C 0.18 4.10 2.18 -68.87 -0.15 3.95 16 13 H 0.00 0.10 5.42 -51.93 -0.28 -0.18 16 14 C -0.13 -2.74 9.10 37.16 0.34 -2.40 16 15 C -0.52 -13.83 8.84 -34.44 -0.30 -14.14 16 16 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 17 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 19 Si 0.87 20.23 26.31 -169.99 -4.47 15.76 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.26 -5.79 6.30 56.52 0.36 -5.44 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.72 7.20 -51.93 -0.37 0.34 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 1.25 7.82 -51.93 -0.41 0.85 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.21 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.10 1.68 7.60 -51.93 -0.39 1.28 16 34 H 0.04 0.66 7.78 -51.93 -0.40 0.25 16 35 H 0.34 6.79 8.31 -39.29 -0.33 6.46 16 36 H 0.05 1.02 6.97 -51.93 -0.36 0.66 16 37 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 38 H 0.02 0.39 7.64 -51.93 -0.40 -0.01 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -30.14 320.36 -8.12 -38.25 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.35 Total: 5.23 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.23 Total: -5.22 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.11 Total: -58.85 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.47 Total: 15.76 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.14 -8.12 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.229 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds