Wall clock time and date at job start Sun Mar 29 2020 23:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47261 * 119.95066 * 2 1 4 4 C 1.53061 * 108.56206 * 250.66482 * 3 2 1 5 5 N 1.45557 * 110.84932 * 274.26774 * 4 3 2 6 6 C 1.46897 * 111.00119 * 300.53322 * 5 4 3 7 7 C 1.53004 * 109.47528 * 294.19786 * 6 5 4 8 8 C 1.50701 * 115.54681 * 306.36877 * 7 6 5 9 9 H 1.07998 * 119.99484 * 144.26858 * 8 7 6 10 10 C 1.37870 * 120.00002 * 324.27037 * 8 7 6 11 11 N 1.31520 * 120.00063 * 351.20100 * 10 8 7 12 12 Si 1.86805 * 120.00107 * 171.20487 * 10 8 7 13 13 H 1.48494 * 109.47388 * 89.99894 * 12 10 8 14 14 H 1.48506 * 109.47036 * 210.00068 * 12 10 8 15 15 H 1.48499 * 109.46829 * 329.99661 * 12 10 8 16 16 C 1.52997 * 117.50073 * 160.69602 * 7 6 5 17 17 C 1.53002 * 117.49858 * 92.03430 * 7 6 5 18 18 C 1.45580 * 116.01964 * 68.45169 * 5 4 3 19 19 C 1.53138 * 110.69279 * 291.77943 * 18 5 4 20 20 C 1.33635 * 119.94799 * 179.97438 * 2 1 3 21 21 O 1.21278 * 120.04998 * 359.73938 * 20 2 1 22 22 H 1.08998 * 109.46737 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47302 * 300.02098 * 1 2 3 24 24 H 1.08998 * 109.46985 * 60.02188 * 1 2 3 25 25 H 1.08997 * 109.62253 * 130.93779 * 3 2 1 26 26 H 1.09004 * 109.61784 * 10.38911 * 3 2 1 27 27 H 1.09004 * 109.19952 * 153.91267 * 4 3 2 28 28 H 1.09004 * 109.20427 * 34.62105 * 4 3 2 29 29 H 1.09007 * 109.46704 * 54.19581 * 6 5 4 30 30 H 1.09001 * 109.47329 * 174.19662 * 6 5 4 31 31 H 0.97002 * 119.99664 * 185.01346 * 11 10 8 32 32 H 1.08998 * 117.50041 * 359.97438 * 16 7 6 33 33 H 1.09003 * 117.49947 * 145.02082 * 16 7 6 34 34 H 1.08998 * 117.50071 * 214.98219 * 17 7 6 35 35 H 1.09001 * 117.49672 * 359.97438 * 17 7 6 36 36 H 1.09005 * 109.23198 * 52.08946 * 18 5 4 37 37 H 1.09002 * 109.23515 * 171.46197 * 18 5 4 38 38 H 1.09000 * 109.68381 * 203.86299 * 19 18 5 39 39 H 1.08998 * 109.68288 * 324.38511 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2002 1.2760 0.0000 4 6 2.8597 1.4583 -1.3692 5 7 4.1533 0.7925 -1.4138 6 6 5.0576 1.3296 -0.3883 7 6 5.3827 2.7899 -0.7091 8 6 5.9177 3.0474 -2.0942 9 1 5.6500 3.9540 -2.6165 10 6 6.7489 2.1257 -2.6946 11 7 7.2142 1.1098 -2.0009 12 14 7.2141 2.3197 -4.4933 13 1 8.4512 3.1342 -4.5996 14 1 7.4502 0.9808 -5.0908 15 1 6.1108 2.9982 -5.2196 16 6 5.9193 3.6606 0.4287 17 6 4.4918 3.8656 -0.0846 18 6 4.1245 -0.6625 -1.3736 19 6 3.6470 -1.1566 -0.0050 20 6 2.1321 -1.1579 0.0005 21 8 1.5257 -2.2082 0.0058 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5141 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 2.9658 1.2572 0.7756 26 1 1.5079 2.0973 0.1852 27 1 2.9972 2.5223 -1.5620 28 1 2.2125 1.0361 -2.1380 29 1 4.5758 1.2706 0.5877 30 1 5.9786 0.7469 -0.3748 31 1 7.8558 0.5024 -2.4013 32 1 6.0403 3.1933 1.4060 33 1 6.6591 4.4201 0.1754 34 1 4.2930 4.7598 -0.6753 35 1 3.6738 3.5330 0.5545 36 1 3.4467 -1.0296 -2.1443 37 1 5.1263 -1.0469 -1.5647 38 1 4.0157 -2.1674 0.1694 39 1 4.0170 -0.4912 0.7750 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602891736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:54 Heat of formation + Delta-G solvation = 14.190223 kcal Electronic energy + Delta-G solvation = -20177.333674 eV Core-core repulsion = 17314.501610 eV Total energy + Delta-G solvation = -2862.832064 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28177 -37.83857 -35.75287 -34.69735 -32.03860 -30.91484 -28.93651 -26.52140 -25.39137 -25.07183 -23.66741 -21.20479 -20.46733 -18.86599 -18.54074 -16.83540 -16.45901 -15.93334 -15.11636 -14.84296 -14.67927 -14.35004 -13.64706 -13.44800 -13.12195 -12.90509 -12.57704 -12.53750 -12.11185 -11.82112 -11.53805 -11.16410 -11.08411 -10.93145 -10.69792 -10.65098 -10.51335 -10.45210 -10.02496 -9.45568 -9.34308 -8.97278 -8.71636 -8.65869 -8.00914 -7.08231 -5.91711 -3.94454 2.87583 3.22148 3.33564 3.41742 3.45679 4.46112 4.63473 4.74707 5.10311 5.27024 5.36488 5.39780 5.41977 5.58266 5.60432 5.64032 5.69803 5.79636 5.88123 6.01522 6.07703 6.28167 6.33663 6.49245 6.54657 6.55318 6.64231 6.64951 6.81120 6.92610 7.14438 7.31009 7.52226 7.57339 8.01571 8.16399 8.24182 8.38759 8.53415 8.99116 9.66265 11.10236 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.007889 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.745535 B = 3548.438794 C = 4007.952016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.613 5.613 3 C 0.065 3.935 4 C 0.055 3.945 5 N -0.516 5.516 6 C 0.103 3.897 7 C 0.068 3.932 8 C -0.475 4.475 9 H 0.053 0.947 10 C 0.090 3.910 11 N -0.877 5.877 12 Si 0.890 3.110 13 H -0.286 1.286 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.208 4.208 17 C -0.220 4.220 18 C 0.086 3.914 19 C -0.181 4.181 20 C 0.518 3.482 21 O -0.563 6.563 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.062 0.938 29 H -0.007 1.007 30 H 0.118 0.882 31 H 0.257 0.743 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.897 -0.458 3.895 8.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.347 5.347 3 C -0.059 4.059 4 C -0.075 4.075 5 N -0.236 5.236 6 C -0.023 4.023 7 C 0.067 3.933 8 C -0.512 4.512 9 H 0.071 0.929 10 C -0.113 4.113 11 N -0.514 5.514 12 Si 0.719 3.281 13 H -0.213 1.213 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.246 4.246 17 C -0.258 4.258 18 C -0.044 4.044 19 C -0.224 4.224 20 C 0.308 3.692 21 O -0.443 6.443 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.010 0.990 30 H 0.136 0.864 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.978 -1.103 3.395 8.740 hybrid contribution -0.139 0.150 -0.048 0.210 sum -8.117 -0.954 3.346 8.831 Atomic orbital electron populations 1.21641 0.80122 1.03703 1.00933 1.47891 1.06720 1.06921 1.73136 1.22871 0.96550 0.84363 1.02137 1.22253 0.89936 1.01884 0.93406 1.59465 1.09567 1.02678 1.51867 1.21816 0.96190 0.97130 0.87172 1.18958 0.94682 0.87137 0.92488 1.20276 1.28944 1.04222 0.97785 0.92857 1.24715 0.95300 0.94326 0.96979 1.69755 1.29619 1.15773 1.36279 0.86648 0.78286 0.77176 0.86024 1.21295 1.21313 1.20069 1.22981 0.95485 1.06667 0.99504 1.22993 0.92784 1.04052 1.05936 1.21704 1.02144 0.88437 0.92087 1.22868 0.91169 1.04711 1.03611 1.20818 0.90916 0.82929 0.74578 1.90636 1.70801 1.31419 1.51431 0.89885 0.92643 0.92390 0.89906 0.90002 0.88340 0.91980 0.98960 0.86438 0.93252 0.92049 0.90503 0.90879 0.91899 0.92159 0.88988 0.88762 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.61 59.85 0.64 1.61 16 2 N -0.61 -9.23 2.88 -180.91 -0.52 -9.75 16 3 C 0.06 0.94 5.19 -3.59 -0.02 0.92 16 4 C 0.05 0.93 5.25 -4.52 -0.02 0.90 16 5 N -0.52 -9.98 4.10 -236.72 -0.97 -10.95 16 6 C 0.10 2.12 3.12 -3.82 -0.01 2.11 16 7 C 0.07 1.51 1.35 -155.66 -0.21 1.30 16 8 C -0.48 -12.02 8.72 -34.44 -0.30 -12.32 16 9 H 0.05 1.38 7.83 -52.49 -0.41 0.97 16 10 C 0.09 2.29 5.18 -17.82 -0.09 2.20 16 11 N -0.88 -22.44 10.71 55.43 0.59 -21.85 16 12 Si 0.89 20.53 29.55 -169.99 -5.02 15.50 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 17 C -0.22 -4.28 8.40 -26.69 -0.22 -4.50 16 18 C 0.09 1.53 5.55 -4.47 -0.02 1.50 16 19 C -0.18 -2.95 5.49 -27.42 -0.15 -3.10 16 20 C 0.52 8.97 6.82 -11.10 -0.08 8.90 16 21 O -0.56 -11.31 16.39 5.56 0.09 -11.22 16 22 H 0.08 1.13 6.88 -51.93 -0.36 0.77 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.28 4.76 -51.93 -0.25 1.03 16 26 H 0.08 1.01 7.96 -51.93 -0.41 0.59 16 27 H 0.10 1.77 6.23 -51.93 -0.32 1.45 16 28 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 29 H -0.01 -0.14 4.57 -51.92 -0.24 -0.37 16 30 H 0.12 2.74 5.82 -51.93 -0.30 2.44 16 31 H 0.26 6.43 8.32 -40.82 -0.34 6.09 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 1.09 7.47 -51.93 -0.39 0.70 16 36 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 37 H 0.09 1.74 8.07 -51.93 -0.42 1.32 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.09 1.47 5.28 -51.93 -0.27 1.20 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -27.52 298.57 -7.96 -35.49 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.87 Total: 3.40 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.76 Total: -5.12 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -0.90 Total: -42.55 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.52 -7.96 -35.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602891736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.677 kcal (2) G-P(sol) polarization free energy of solvation -27.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds