Wall clock time and date at job start Sun Mar 29 2020 23:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47261 * 119.95066 * 2 1 4 4 C 1.53061 * 108.56206 * 250.66482 * 3 2 1 5 5 N 1.45557 * 110.84932 * 274.26774 * 4 3 2 6 6 C 1.46897 * 111.00119 * 300.53322 * 5 4 3 7 7 C 1.53004 * 109.47528 * 294.19786 * 6 5 4 8 8 C 1.50701 * 115.54681 * 306.36877 * 7 6 5 9 9 H 1.07998 * 119.99484 * 144.26858 * 8 7 6 10 10 C 1.37870 * 120.00002 * 324.27037 * 8 7 6 11 11 N 1.31520 * 120.00063 * 351.20100 * 10 8 7 12 12 Si 1.86805 * 120.00107 * 171.20487 * 10 8 7 13 13 H 1.48494 * 109.47388 * 89.99894 * 12 10 8 14 14 H 1.48506 * 109.47036 * 210.00068 * 12 10 8 15 15 H 1.48499 * 109.46829 * 329.99661 * 12 10 8 16 16 C 1.52997 * 117.50073 * 160.69602 * 7 6 5 17 17 C 1.53002 * 117.49858 * 92.03430 * 7 6 5 18 18 C 1.45580 * 116.01964 * 68.45169 * 5 4 3 19 19 C 1.53138 * 110.69279 * 291.77943 * 18 5 4 20 20 C 1.33635 * 119.94799 * 179.97438 * 2 1 3 21 21 O 1.21278 * 120.04998 * 359.73938 * 20 2 1 22 22 H 1.08998 * 109.46737 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47302 * 300.02098 * 1 2 3 24 24 H 1.08998 * 109.46985 * 60.02188 * 1 2 3 25 25 H 1.08997 * 109.62253 * 130.93779 * 3 2 1 26 26 H 1.09004 * 109.61784 * 10.38911 * 3 2 1 27 27 H 1.09004 * 109.19952 * 153.91267 * 4 3 2 28 28 H 1.09004 * 109.20427 * 34.62105 * 4 3 2 29 29 H 1.09007 * 109.46704 * 54.19581 * 6 5 4 30 30 H 1.09001 * 109.47329 * 174.19662 * 6 5 4 31 31 H 0.97002 * 119.99664 * 185.01346 * 11 10 8 32 32 H 1.08998 * 117.50041 * 359.97438 * 16 7 6 33 33 H 1.09003 * 117.49947 * 145.02082 * 16 7 6 34 34 H 1.08998 * 117.50071 * 214.98219 * 17 7 6 35 35 H 1.09001 * 117.49672 * 359.97438 * 17 7 6 36 36 H 1.09005 * 109.23198 * 52.08946 * 18 5 4 37 37 H 1.09002 * 109.23515 * 171.46197 * 18 5 4 38 38 H 1.09000 * 109.68381 * 203.86299 * 19 18 5 39 39 H 1.08998 * 109.68288 * 324.38511 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2002 1.2760 0.0000 4 6 2.8597 1.4583 -1.3692 5 7 4.1533 0.7925 -1.4138 6 6 5.0576 1.3296 -0.3883 7 6 5.3827 2.7899 -0.7091 8 6 5.9177 3.0474 -2.0942 9 1 5.6500 3.9540 -2.6165 10 6 6.7489 2.1257 -2.6946 11 7 7.2142 1.1098 -2.0009 12 14 7.2141 2.3197 -4.4933 13 1 8.4512 3.1342 -4.5996 14 1 7.4502 0.9808 -5.0908 15 1 6.1108 2.9982 -5.2196 16 6 5.9193 3.6606 0.4287 17 6 4.4918 3.8656 -0.0846 18 6 4.1245 -0.6625 -1.3736 19 6 3.6470 -1.1566 -0.0050 20 6 2.1321 -1.1579 0.0005 21 8 1.5257 -2.2082 0.0058 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5141 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 2.9658 1.2572 0.7756 26 1 1.5079 2.0973 0.1852 27 1 2.9972 2.5223 -1.5620 28 1 2.2125 1.0361 -2.1380 29 1 4.5758 1.2706 0.5877 30 1 5.9786 0.7469 -0.3748 31 1 7.8558 0.5024 -2.4013 32 1 6.0403 3.1933 1.4060 33 1 6.6591 4.4201 0.1754 34 1 4.2930 4.7598 -0.6753 35 1 3.6738 3.5330 0.5545 36 1 3.4467 -1.0296 -2.1443 37 1 5.1263 -1.0469 -1.5647 38 1 4.0157 -2.1674 0.1694 39 1 4.0170 -0.4912 0.7750 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602891736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:54 Heat of formation + Delta-G solvation = -2.242717 kcal Electronic energy + Delta-G solvation = -20178.046260 eV Core-core repulsion = 17314.501610 eV Total energy + Delta-G solvation = -2863.544650 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61846 -39.34823 -37.27352 -36.02347 -33.94090 -32.29057 -30.16880 -27.97119 -27.18932 -26.41908 -24.98851 -22.80687 -21.98617 -20.45413 -19.88198 -18.28932 -17.90661 -17.37049 -16.59779 -16.40979 -16.21661 -15.92924 -15.17232 -14.79794 -14.63904 -14.12174 -14.04160 -13.71993 -13.51589 -13.20480 -12.92873 -12.86683 -12.78551 -12.52885 -12.26673 -12.16762 -12.03940 -12.01897 -11.77008 -11.07214 -10.87846 -10.75555 -10.36679 -9.95725 -9.79763 -8.50830 -7.82603 -5.89940 1.47111 1.52941 1.53453 1.58595 2.04834 2.56185 3.14020 3.38017 3.46891 3.85150 4.05673 4.08527 4.18142 4.26261 4.35889 4.42249 4.49403 4.58391 4.60800 4.65505 4.76600 4.88953 4.92215 5.01365 5.02176 5.07588 5.12478 5.26508 5.29550 5.48646 5.55104 5.67326 5.78024 6.17725 6.26302 6.54293 6.69185 6.87048 7.08570 7.09547 7.71193 9.15331 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.007889 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.745535 B = 3548.438794 C = 4007.952016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.609 5.609 3 C 0.074 3.926 4 C 0.058 3.942 5 N -0.538 5.538 6 C 0.120 3.880 7 C 0.040 3.960 8 C -0.488 4.488 9 H 0.038 0.962 10 C 0.057 3.943 11 N -0.888 5.888 12 Si 0.932 3.068 13 H -0.287 1.287 14 H -0.290 1.290 15 H -0.278 1.278 16 C -0.213 4.213 17 C -0.191 4.191 18 C 0.094 3.906 19 C -0.170 4.170 20 C 0.514 3.486 21 O -0.596 6.596 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.012 0.988 30 H 0.087 0.913 31 H 0.254 0.746 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.389 0.315 4.741 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C -0.050 4.050 4 C -0.071 4.071 5 N -0.258 5.258 6 C -0.007 4.007 7 C 0.039 3.961 8 C -0.526 4.526 9 H 0.056 0.944 10 C -0.145 4.145 11 N -0.526 5.526 12 Si 0.760 3.240 13 H -0.214 1.214 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.252 4.252 17 C -0.228 4.228 18 C -0.035 4.035 19 C -0.212 4.212 20 C 0.303 3.697 21 O -0.479 6.479 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.133 0.867 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.483 -0.296 4.242 10.393 hybrid contribution 0.312 -0.026 -0.335 0.459 sum -9.171 -0.322 3.907 9.973 Atomic orbital electron populations 1.21836 0.78291 1.03444 1.03113 1.47964 1.07955 1.06397 1.71703 1.22795 0.97074 0.84956 1.00132 1.22188 0.88928 1.00925 0.95012 1.59339 1.10947 1.03347 1.52167 1.21470 0.95408 0.95521 0.88317 1.19023 0.96819 0.88808 0.91459 1.20472 1.29012 1.03614 0.99455 0.94365 1.25144 0.95729 0.94554 0.99043 1.69876 1.29913 1.16049 1.36768 0.86001 0.77752 0.76657 0.83563 1.21369 1.21650 1.20352 1.22970 0.96523 1.06065 0.99626 1.22971 0.92626 1.02459 1.04734 1.21513 1.01129 0.87860 0.92981 1.22737 0.90905 1.05071 1.02536 1.20909 0.91115 0.83169 0.74466 1.90624 1.71361 1.32655 1.53215 0.91401 0.90006 0.90588 0.90333 0.86705 0.89238 0.92045 0.97085 0.89492 0.93634 0.90650 0.91914 0.91068 0.88937 0.92495 0.90671 0.88228 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.62 10.61 127.77 1.36 2.97 16 2 N -0.61 -16.57 2.88 -845.29 -2.43 -19.01 16 3 C 0.07 1.87 5.19 86.25 0.45 2.32 16 4 C 0.06 1.84 5.25 86.58 0.45 2.30 16 5 N -0.54 -20.25 4.10 -902.85 -3.70 -23.95 16 6 C 0.12 4.77 3.12 86.31 0.27 5.04 16 7 C 0.04 1.71 1.35 -52.93 -0.07 1.64 16 8 C -0.49 -24.62 8.72 25.60 0.22 -24.39 16 9 H 0.04 1.99 7.83 -2.91 -0.02 1.96 16 10 C 0.06 2.89 5.18 84.65 0.44 3.33 16 11 N -0.89 -45.84 10.71 21.45 0.23 -45.61 16 12 Si 0.93 42.34 29.55 68.60 2.03 44.36 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 C -0.21 -8.61 9.96 30.62 0.30 -8.31 16 17 C -0.19 -6.88 8.40 30.62 0.26 -6.63 16 18 C 0.09 3.33 5.55 86.60 0.48 3.81 16 19 C -0.17 -5.34 5.49 30.15 0.17 -5.18 16 20 C 0.51 16.96 6.82 88.09 0.60 17.56 16 21 O -0.60 -23.38 16.39 -3.02 -0.05 -23.43 16 22 H 0.07 1.71 6.88 -2.39 -0.02 1.70 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 2.11 4.76 -2.39 -0.01 2.10 16 26 H 0.11 2.22 7.96 -2.38 -0.02 2.20 16 27 H 0.09 3.00 6.23 -2.38 -0.01 2.99 16 28 H 0.06 1.93 8.05 -2.38 -0.02 1.91 16 29 H 0.01 0.41 4.57 -2.38 -0.01 0.40 16 30 H 0.09 4.05 5.82 -2.39 -0.01 4.04 16 31 H 0.25 12.86 8.32 -92.71 -0.77 12.09 16 32 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.09 2.78 7.47 -2.39 -0.02 2.76 16 36 H 0.06 2.01 7.87 -2.38 -0.02 2.00 16 37 H 0.07 2.88 8.07 -2.39 -0.02 2.87 16 38 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.10 2.91 5.28 -2.39 -0.01 2.90 16 Total: -1.00 -58.33 298.57 2.04 -56.29 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.04 Total: 16.88 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 4.93 Total: -5.53 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -5.90 Total: -88.57 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -58.33 2.04 -56.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602891736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.047 kcal (2) G-P(sol) polarization free energy of solvation -58.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds