Wall clock time and date at job start Sun Mar 29 2020 23:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46589 * 2 1 4 4 C 1.52995 * 109.47422 * 64.99851 * 3 2 1 5 5 C 1.52999 * 109.47020 * 57.89244 * 4 3 2 6 6 C 1.53001 * 109.47031 * 184.99910 * 3 2 1 7 7 N 1.46495 * 109.47371 * 174.96070 * 6 3 2 8 8 C 1.35316 * 125.87012 * 124.35142 * 7 6 3 9 9 C 1.35353 * 106.17753 * 180.12059 * 8 7 6 10 10 C 1.50699 * 126.75018 * 179.85141 * 9 8 7 11 11 N 1.46499 * 109.46857 * 94.71198 * 10 9 8 12 12 C 1.36943 * 119.99886 * 179.72084 * 11 10 9 13 13 H 1.08005 * 119.99620 * 0.27750 * 12 11 10 14 14 C 1.38807 * 120.00160 * 180.27657 * 12 11 10 15 15 N 1.31623 * 120.00097 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99993 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47015 * 60.00122 * 16 14 12 18 18 H 1.48501 * 109.46867 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47183 * 299.99974 * 16 14 12 20 20 N 1.33771 * 106.49540 * 359.59359 * 9 8 7 21 21 N 1.28635 * 108.88675 * 0.25683 * 20 9 8 22 22 H 1.09000 * 109.47449 * 300.00122 * 1 2 3 23 23 H 1.08996 * 109.47384 * 60.00752 * 1 2 3 24 24 H 1.09003 * 109.46778 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47449 * 239.99878 * 2 1 3 26 26 H 1.08996 * 109.47384 * 119.99248 * 2 1 3 27 27 H 1.09000 * 109.47368 * 304.99587 * 3 2 1 28 28 H 1.09003 * 109.47018 * 177.89237 * 4 3 2 29 29 H 1.09004 * 109.47270 * 297.89014 * 4 3 2 30 30 H 1.08998 * 109.47225 * 58.71169 * 5 4 3 31 31 H 1.09002 * 109.47005 * 178.70766 * 5 4 3 32 32 H 1.08992 * 109.47014 * 298.70926 * 5 4 3 33 33 H 1.09002 * 109.47017 * 54.96309 * 6 3 2 34 34 H 1.08991 * 109.47193 * 294.96597 * 6 3 2 35 35 H 1.08002 * 126.91116 * 359.97095 * 8 7 6 36 36 H 1.08996 * 109.47236 * 334.70977 * 10 9 8 37 37 H 1.09000 * 109.47142 * 214.71361 * 10 9 8 38 38 H 0.96996 * 120.00118 * 0.02562 * 11 10 9 39 39 H 0.96991 * 120.00094 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6350 2.1266 1.3073 5 6 2.2015 1.3401 2.4911 6 6 3.5647 1.4445 -0.1257 7 7 4.0430 2.8239 -0.2467 8 6 4.9587 3.4186 0.5526 9 6 5.0995 4.6825 0.0893 10 6 6.0054 5.7509 0.6451 11 7 7.2714 5.7497 -0.0921 12 6 8.2547 6.6451 0.2345 13 1 8.0986 7.3491 1.0385 14 6 9.4520 6.6479 -0.4678 15 7 9.6421 5.7903 -1.4480 16 14 10.7936 7.8688 -0.0217 17 1 11.2058 7.6577 1.3892 18 1 11.9633 7.6668 -0.9141 19 1 10.2785 9.2520 -0.1854 20 7 4.2807 4.7949 -0.9626 21 7 3.6691 3.6766 -1.1356 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6053 1.9816 -0.8418 28 1 2.0303 3.1423 1.3234 29 1 0.5479 2.1587 1.3791 30 1 3.2870 1.2885 2.4070 31 1 1.9325 1.8401 3.4215 32 1 1.7885 0.3314 2.4880 33 1 3.8570 0.8797 -1.0109 34 1 4.0028 0.9844 0.7599 35 1 5.4719 2.9748 1.3929 36 1 6.1985 5.5513 1.6991 37 1 5.5255 6.7241 0.5417 38 1 7.4114 5.1177 -0.8145 39 1 10.4789 5.7920 -1.9384 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603199749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:41 Heat of formation + Delta-G solvation = 92.483115 kcal Electronic energy + Delta-G solvation = -18426.949053 eV Core-core repulsion = 15599.804774 eV Total energy + Delta-G solvation = -2827.144279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.88679 -38.25851 -34.94671 -33.63149 -31.78212 -31.45575 -29.89014 -28.90292 -25.72426 -25.27390 -23.84452 -22.76292 -21.51978 -20.68438 -19.17076 -17.31501 -16.82395 -16.54107 -15.97371 -14.96570 -14.58128 -14.50938 -14.16384 -13.58939 -13.43795 -13.20061 -13.12030 -12.67937 -12.51501 -12.31551 -12.03239 -11.75908 -11.60923 -11.23645 -10.91629 -10.85462 -10.83445 -10.76116 -10.72643 -10.32940 -10.08844 -9.78194 -9.61019 -8.83662 -8.74478 -6.87353 -5.69950 -2.99457 1.95253 2.56492 3.00665 3.48873 3.52892 3.54399 4.17527 4.34417 4.47762 4.65607 4.70168 4.85480 4.88304 4.99951 5.04616 5.12065 5.16714 5.33291 5.39411 5.42756 5.55227 5.58358 5.62623 5.69924 5.77424 5.80836 5.84770 5.89993 6.03428 6.12728 6.23093 6.49149 6.73096 6.83108 6.91065 7.74133 8.47508 8.95209 9.58993 10.15484 10.51557 11.52858 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.052124 B = 0.003738 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.049427 B = 7489.591171 C = 7605.004975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.123 4.123 5 C -0.158 4.158 6 C 0.118 3.882 7 N -0.293 5.293 8 C -0.045 4.045 9 C -0.007 4.007 10 C 0.233 3.767 11 N -0.726 5.726 12 C -0.240 4.240 13 H 0.072 0.928 14 C -0.013 4.013 15 N -0.933 5.933 16 Si 0.910 3.090 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.285 1.285 20 N -0.257 5.257 21 N -0.096 5.096 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.185 0.815 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 -14.578 7.096 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.120 4.120 4 C -0.160 4.160 5 C -0.215 4.215 6 C -0.003 4.003 7 N -0.087 5.087 8 C -0.196 4.196 9 C -0.145 4.145 10 C 0.104 3.896 11 N -0.371 5.371 12 C -0.371 4.371 13 H 0.090 0.910 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.740 3.260 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.212 1.212 20 N -0.124 5.124 21 N -0.075 5.075 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.202 0.798 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.219 0.781 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.224 -14.219 5.948 23.868 hybrid contribution 1.574 0.057 0.847 1.788 sum -16.650 -14.163 6.794 22.890 Atomic orbital electron populations 1.21783 0.95257 1.01684 1.02236 1.21564 0.96617 0.95003 1.02551 1.21533 0.92843 0.97714 0.99944 1.21561 1.01337 0.99457 0.93642 1.21912 1.01032 1.00464 0.98074 1.22198 0.96111 0.77429 1.04603 1.47229 1.28342 1.12377 1.20775 1.23371 0.99006 0.95189 1.02004 1.22440 1.00578 0.95744 0.95774 1.18927 0.84785 0.92021 0.93863 1.42312 1.11529 1.42469 1.40751 1.19198 0.93540 1.10704 1.13633 0.90957 1.24757 0.98259 0.99513 0.98419 1.69674 1.25753 1.38602 1.24098 0.86232 0.81469 0.80887 0.77369 1.21263 1.21749 1.21193 1.75092 1.07987 1.13946 1.15406 1.78202 1.21545 0.94992 1.12765 0.92371 0.92526 0.92634 0.91541 0.91136 0.89223 0.91964 0.91220 0.92660 0.92539 0.92150 0.88671 0.87744 0.79751 0.94591 0.94441 0.78110 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.67 37.16 0.36 -0.55 16 2 C -0.12 -0.73 5.14 -26.73 -0.14 -0.87 16 3 C -0.10 -0.84 2.22 -90.62 -0.20 -1.04 16 4 C -0.12 -1.06 5.32 -26.73 -0.14 -1.20 16 5 C -0.16 -1.12 9.21 37.16 0.34 -0.77 16 6 C 0.12 1.11 5.67 -4.04 -0.02 1.09 16 7 N -0.29 -4.22 2.85 -61.27 -0.17 -4.39 16 8 C -0.04 -0.70 11.50 -17.04 -0.20 -0.90 16 9 C -0.01 -0.14 6.61 -82.78 -0.55 -0.69 16 10 C 0.23 5.06 6.82 -5.19 -0.04 5.02 16 11 N -0.73 -19.48 5.59 -61.09 -0.34 -19.82 16 12 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 13 H 0.07 1.98 7.83 -52.48 -0.41 1.56 16 14 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 15 N -0.93 -29.18 13.06 55.49 0.72 -28.46 16 16 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 N -0.26 -5.41 12.41 33.29 0.41 -5.00 16 21 N -0.10 -1.74 12.85 60.35 0.78 -0.96 16 22 H 0.06 0.35 6.61 -51.93 -0.34 0.00 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.37 6.15 -51.93 -0.32 0.05 16 27 H 0.09 0.91 8.01 -51.93 -0.42 0.50 16 28 H 0.06 0.71 7.70 -51.93 -0.40 0.31 16 29 H 0.07 0.56 6.67 -51.93 -0.35 0.21 16 30 H 0.05 0.39 6.31 -51.93 -0.33 0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.35 6.35 -51.93 -0.33 0.02 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.75 6.14 -51.93 -0.32 0.43 16 35 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.39 11.15 7.66 -40.82 -0.31 10.84 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -33.93 318.08 -5.70 -39.63 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.04 Total: 3.87 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.83 Total: -7.45 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 1.40 Total: -58.63 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.93 -5.70 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603199749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.115 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds