Wall clock time and date at job start Sun Mar 29 2020 23:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 C 1.52994 * 109.47356 * 120.00520 * 2 1 3 5 5 C 1.52997 * 109.47404 * 174.99986 * 4 2 1 6 6 H 1.09002 * 109.47153 * 54.99686 * 5 4 2 7 7 C 1.53002 * 109.46817 * 294.99916 * 5 4 2 8 8 N 1.46505 * 109.47212 * 174.99693 * 5 4 2 9 9 C 1.35310 * 125.86419 * 85.00110 * 8 5 4 10 10 C 1.35355 * 106.17341 * 179.97438 * 9 8 5 11 11 C 1.50699 * 126.75131 * 180.02562 * 10 9 8 12 12 N 1.46498 * 109.46846 * 95.00155 * 11 10 9 13 13 C 1.36942 * 120.00024 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99796 * 0.02562 * 13 12 11 15 15 C 1.38804 * 120.00099 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00277 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99783 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47417 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47113 * 119.99886 * 17 15 13 20 20 H 1.48504 * 109.47038 * 239.99549 * 17 15 13 21 21 N 1.33773 * 106.49538 * 359.97438 * 10 9 8 22 22 N 1.28633 * 108.88355 * 359.73750 * 21 10 9 23 23 H 1.08994 * 109.47345 * 299.99908 * 1 2 3 24 24 H 1.09006 * 109.47459 * 59.99551 * 1 2 3 25 25 H 1.09006 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46936 * 240.00470 * 2 1 3 27 27 H 1.08993 * 109.47103 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46802 * 300.00618 * 3 2 1 29 29 H 1.09004 * 109.46786 * 59.99824 * 3 2 1 30 30 H 1.09000 * 109.47017 * 54.99628 * 4 2 1 31 31 H 1.09008 * 109.46970 * 294.99937 * 4 2 1 32 32 H 1.09002 * 109.47075 * 299.99262 * 7 5 4 33 33 H 1.08996 * 109.47407 * 60.00219 * 7 5 4 34 34 H 1.09000 * 109.46986 * 179.97438 * 7 5 4 35 35 H 1.08005 * 126.91562 * 359.97438 * 9 8 5 36 36 H 1.09002 * 109.47187 * 214.99982 * 11 10 9 37 37 H 1.09002 * 109.47208 * 335.00325 * 11 10 9 38 38 H 0.96993 * 120.00400 * 359.97438 * 12 11 10 39 39 H 0.97001 * 120.00134 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 1 3.9954 0.1611 1.0526 7 6 3.9649 -1.7252 0.0124 8 7 4.0631 -1.4137 2.4363 9 6 4.1539 -2.7349 2.7138 10 6 4.6622 -2.8233 3.9652 11 6 4.9542 -4.0869 4.7327 12 7 6.3619 -4.4516 4.5554 13 6 6.8608 -5.5721 5.1644 14 1 6.2164 -6.1872 5.7750 15 6 8.1948 -5.9173 4.9969 16 7 8.9801 -5.1681 4.2524 17 14 8.8751 -7.4463 5.8270 18 1 7.7961 -8.1112 6.6007 19 1 9.3920 -8.3811 4.7954 20 1 9.9781 -7.0623 6.7442 21 7 4.8555 -1.5683 4.3861 22 7 4.4962 -0.7568 3.4550 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -1.7199 1.2950 31 1 1.7517 -0.1584 2.1369 32 1 3.5344 -2.7174 0.1477 33 1 3.5942 -1.2917 -0.9164 34 1 5.0512 -1.8031 -0.0315 35 1 3.8765 -3.5542 2.0670 36 1 4.7515 -3.9241 5.7913 37 1 4.3206 -4.8923 4.3611 38 1 6.9406 -3.8994 4.0068 39 1 9.9124 -5.4092 4.1357 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603229613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:30 Heat of formation + Delta-G solvation = 91.321057 kcal Electronic energy + Delta-G solvation = -18359.003948 eV Core-core repulsion = 15531.809278 eV Total energy + Delta-G solvation = -2827.194669 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.89747 -38.14298 -35.05762 -34.25931 -31.91008 -30.57676 -29.85037 -27.57253 -27.23906 -25.79051 -23.91034 -22.75191 -21.11138 -20.59124 -19.87190 -17.40954 -16.79567 -16.35609 -15.52011 -14.77053 -14.63880 -14.26309 -14.11814 -13.86611 -13.49294 -13.11865 -12.94234 -12.70816 -12.55837 -12.39551 -11.99780 -11.86907 -11.67083 -11.35603 -11.16970 -11.02089 -10.96241 -10.82143 -10.79119 -10.32139 -10.02334 -9.78662 -9.61006 -8.84800 -8.74136 -6.87218 -5.70312 -2.99676 1.95229 2.51906 3.01122 3.47864 3.53292 3.55824 4.15977 4.30985 4.46061 4.53864 4.66410 4.71547 4.81418 4.89352 5.11308 5.22972 5.29224 5.33150 5.34965 5.43247 5.48590 5.54987 5.56290 5.59466 5.68652 5.73230 5.80033 5.88089 5.95406 6.06528 6.23041 6.49243 6.73318 6.83744 6.93307 7.75078 8.47070 8.95862 9.58821 10.15345 10.51445 11.52611 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.047389 B = 0.003736 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.718191 B = 7491.848142 C = 7559.539752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.155 4.155 4 C -0.126 4.126 5 C 0.142 3.858 6 H 0.112 0.888 7 C -0.168 4.168 8 N -0.293 5.293 9 C -0.043 4.043 10 C -0.008 4.008 11 C 0.233 3.767 12 N -0.726 5.726 13 C -0.238 4.238 14 H 0.074 0.926 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.909 3.091 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.292 1.292 21 N -0.257 5.257 22 N -0.099 5.099 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.185 0.815 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.385 0.615 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.331 10.121 -12.750 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.212 4.212 4 C -0.164 4.164 5 C 0.040 3.960 6 H 0.130 0.870 7 C -0.226 4.226 8 N -0.087 5.087 9 C -0.194 4.194 10 C -0.146 4.146 11 C 0.104 3.896 12 N -0.371 5.371 13 C -0.369 4.369 14 H 0.092 0.908 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.740 3.260 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 N -0.124 5.124 22 N -0.078 5.078 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.202 0.798 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.219 0.781 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.058 11.385 -12.054 23.789 hybrid contribution 0.468 -1.634 -0.357 1.736 sum -16.591 9.752 -12.411 22.899 Atomic orbital electron populations 1.21830 0.94656 1.01977 1.02012 1.21140 0.96222 0.96455 0.97445 1.21957 1.01279 0.95742 1.02200 1.22081 0.92597 1.02189 0.99567 1.21685 0.95335 0.99157 0.79836 0.87035 1.22264 1.03373 1.00180 0.96802 1.47456 1.41959 1.05430 1.13872 1.23279 1.09170 0.87367 0.99576 1.22446 1.02765 0.95357 0.94015 1.18929 0.88394 0.86580 0.95690 1.42323 1.04568 1.30009 1.60175 1.19288 0.93510 1.00686 1.23407 0.90846 1.24757 0.96363 0.99234 1.00666 1.69696 1.05691 1.39540 1.43154 0.86089 0.78825 0.82500 0.78605 1.20466 1.21948 1.21872 1.75078 1.16535 1.00286 1.20532 1.78230 1.15483 1.21989 0.92049 0.92540 0.92408 0.92510 0.90404 0.92334 0.92396 0.92307 0.90724 0.90644 0.90981 0.89576 0.90948 0.79815 0.94409 0.94585 0.78114 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.09 -0.57 2.78 -90.62 -0.25 -0.83 16 3 C -0.15 -0.95 8.95 37.16 0.33 -0.62 16 4 C -0.13 -1.03 4.47 -26.74 -0.12 -1.15 16 5 C 0.14 1.41 3.19 -67.93 -0.22 1.19 16 6 H 0.11 1.07 6.34 -51.93 -0.33 0.74 16 7 C -0.17 -1.36 8.59 37.16 0.32 -1.04 16 8 N -0.29 -4.36 3.25 -54.76 -0.18 -4.54 16 9 C -0.04 -0.69 10.62 -17.05 -0.18 -0.87 16 10 C -0.01 -0.15 6.62 -82.78 -0.55 -0.70 16 11 C 0.23 5.09 6.82 -5.20 -0.04 5.05 16 12 N -0.73 -19.52 5.59 -61.09 -0.34 -19.86 16 13 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 16 14 H 0.07 2.02 7.83 -52.48 -0.41 1.60 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 17 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 21 N -0.26 -5.50 12.41 33.29 0.41 -5.09 16 22 N -0.10 -1.85 13.16 60.35 0.79 -1.05 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.41 6.34 -51.93 -0.33 0.08 16 27 H 0.06 0.36 6.46 -51.93 -0.34 0.03 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.07 0.56 7.17 -51.93 -0.37 0.18 16 33 H 0.09 0.48 6.46 -51.93 -0.34 0.15 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.18 2.34 7.30 -52.48 -0.38 1.96 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.39 11.17 7.66 -40.82 -0.31 10.86 16 39 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 320.39 15.07 4.83 4.83 Total: -1.00 -34.11 320.39 -5.56 -39.67 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.17 Total: 3.67 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.61 Total: -6.98 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 1.41 Total: -58.97 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.11 -5.56 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603229613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.994 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds