Wall clock time and date at job start Sun Mar 29 2020 23:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99639 * 2 1 4 4 H 1.48496 * 109.47192 * 269.99677 * 3 2 1 5 5 H 1.48499 * 109.47404 * 30.00045 * 3 2 1 6 6 H 1.48504 * 109.46976 * 150.00080 * 3 2 1 7 7 C 1.37869 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99873 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00297 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.47548 * 179.97438 * 9 7 2 11 11 C 1.46957 * 110.99969 * 170.00007 * 10 9 7 12 12 C 1.53054 * 109.35811 * 183.19161 * 11 10 9 13 13 N 1.46955 * 109.36808 * 301.60033 * 12 11 10 14 14 C 1.46901 * 110.99835 * 183.19253 * 13 12 11 15 15 C 1.53000 * 109.46769 * 170.00204 * 14 13 12 16 16 C 1.54268 * 110.03010 * 292.90186 * 15 14 13 17 17 C 1.54962 * 104.16016 * 217.13690 * 16 15 14 18 18 C 1.54891 * 102.77626 * 37.89151 * 17 16 15 19 19 C 1.53876 * 110.02883 * 175.68862 * 15 14 13 20 20 C 1.46958 * 110.87954 * 59.32271 * 13 12 11 21 21 C 1.46955 * 111.00275 * 293.80481 * 10 9 7 22 22 H 0.97005 * 119.99938 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46687 * 60.00126 * 9 7 2 24 24 H 1.08993 * 109.47360 * 300.00300 * 9 7 2 25 25 H 1.08997 * 109.48667 * 63.22986 * 11 10 9 26 26 H 1.08993 * 109.48792 * 303.15938 * 11 10 9 27 27 H 1.09002 * 109.48344 * 181.63089 * 12 11 10 28 28 H 1.08998 * 109.49062 * 61.57491 * 12 11 10 29 29 H 1.09002 * 109.47401 * 49.99911 * 14 13 12 30 30 H 1.09001 * 109.46874 * 289.99924 * 14 13 12 31 31 H 1.08995 * 110.01931 * 54.29389 * 15 14 13 32 32 H 1.09001 * 110.49106 * 335.78894 * 16 15 14 33 33 H 1.09005 * 110.48252 * 98.43414 * 16 15 14 34 34 H 1.08996 * 110.72203 * 279.57767 * 17 16 15 35 35 H 1.09000 * 110.76267 * 156.22272 * 17 16 15 36 36 H 1.09004 * 110.48670 * 203.40017 * 18 17 16 37 37 H 1.09008 * 110.59690 * 80.81651 * 18 17 16 38 38 H 1.08995 * 110.03269 * 238.56224 * 19 15 14 39 39 H 1.08997 * 110.03631 * 0.02562 * 19 15 14 40 40 H 1.08997 * 109.48699 * 60.64519 * 20 13 12 41 41 H 1.08993 * 109.48441 * 180.71371 * 20 13 12 42 42 H 1.08997 * 109.48797 * 296.78085 * 21 10 9 43 43 H 1.09004 * 109.48478 * 56.84258 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0013 11 6 5.4506 -2.6253 -0.2374 12 6 5.9068 -4.0846 -0.3077 13 7 5.5609 -4.7643 0.9484 14 6 6.0506 -6.1493 0.9496 15 6 5.8966 -6.7434 2.3512 16 6 6.8465 -6.0294 3.3350 17 6 7.3312 -7.1575 4.2803 18 6 7.4898 -8.3635 3.3212 19 6 6.3051 -8.2269 2.3426 20 6 4.1115 -4.7179 1.1871 21 6 3.6553 -3.2587 1.2574 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6795 0.8895 24 1 3.8745 -0.6807 -0.8904 25 1 5.9697 -2.1208 0.5775 26 1 5.6801 -2.1267 -1.1791 27 1 6.9861 -4.1213 -0.4558 28 1 5.4082 -4.5818 -1.1396 29 1 7.1020 -6.1632 0.6625 30 1 5.4721 -6.7398 0.2391 31 1 4.8651 -6.6420 2.6881 32 1 7.6895 -5.5907 2.8011 33 1 6.3096 -5.2646 3.8964 34 1 6.5834 -7.3678 5.0449 35 1 8.2871 -6.8970 4.7346 36 1 7.4227 -9.3011 3.8730 37 1 8.4367 -8.3046 2.7846 38 1 5.4721 -8.8455 2.6762 39 1 6.6135 -8.5235 1.3401 40 1 3.5925 -5.2224 0.3721 41 1 3.8820 -5.2165 2.1288 42 1 4.1539 -2.7614 2.0893 43 1 2.5760 -3.2220 1.4054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:43 Heat of formation + Delta-G solvation = -4.939226 kcal Electronic energy + Delta-G solvation = -19224.065533 eV Core-core repulsion = 16496.237048 eV Total energy + Delta-G solvation = -2727.828485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.28751 -37.81594 -34.96129 -32.44837 -30.63310 -30.14736 -28.74333 -27.99752 -25.37840 -23.25899 -22.81248 -21.04477 -20.71999 -19.49289 -19.11941 -16.78913 -16.33189 -15.40196 -15.19378 -14.60138 -14.38884 -14.32825 -14.05791 -13.61113 -13.50419 -13.35674 -12.81840 -12.30399 -12.01209 -11.91933 -11.53963 -11.24775 -11.08385 -11.06012 -10.88878 -10.85120 -10.75957 -10.69540 -10.61224 -10.43887 -10.21331 -9.92845 -9.77219 -9.24356 -8.55457 -8.08787 -7.32686 -6.04020 -4.01229 3.29705 3.37044 3.39788 4.05234 4.43458 4.55922 4.59160 4.67666 4.81333 5.08030 5.28437 5.29897 5.35784 5.39778 5.48993 5.56226 5.57590 5.58275 5.65003 5.74190 5.77301 5.79716 5.85637 5.91159 5.97192 6.00169 6.06884 6.17069 6.21556 6.28447 6.36590 6.42938 6.55674 6.67378 6.86971 7.00303 7.29366 7.32777 7.62070 7.94428 8.08708 8.67914 9.03971 9.57997 11.09076 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.042032 B = 0.004168 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.999601 B = 6716.568823 C = 6809.753172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.530 5.530 11 C 0.054 3.946 12 C 0.062 3.938 13 N -0.538 5.538 14 C 0.064 3.936 15 C -0.090 4.090 16 C -0.104 4.104 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.120 4.120 20 C 0.057 3.943 21 C 0.067 3.933 22 H 0.263 0.737 23 H -0.011 1.011 24 H 0.023 0.977 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.196 -14.251 5.130 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.066 4.066 13 N -0.263 5.263 14 C -0.064 4.064 15 C -0.109 4.109 16 C -0.141 4.141 17 C -0.167 4.167 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.071 4.071 21 C -0.061 4.061 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.028 -14.114 5.116 21.241 hybrid contribution 0.334 0.978 -0.105 1.039 sum 15.362 -13.135 5.011 20.824 Atomic orbital electron populations 1.69899 1.06119 1.26810 1.51195 1.24898 0.94736 0.98857 0.94854 0.86858 0.80325 0.84001 0.78561 1.20181 1.21212 1.19262 1.21033 0.88760 0.94680 1.50211 0.90213 1.20151 0.97019 0.84173 0.95045 1.62099 1.10413 1.19057 1.33869 1.22105 0.90194 0.94864 1.00303 1.22116 0.99300 0.94985 0.90245 1.62164 1.14794 1.14792 1.34515 1.22211 0.99779 0.88612 0.95846 1.21809 1.00242 0.93689 0.95179 1.22262 0.98735 0.96858 0.96278 1.22565 1.00741 0.95625 0.97756 1.22340 0.98349 0.98170 0.97237 1.22186 0.98023 0.96162 0.99490 1.22266 0.86630 0.97923 1.00295 1.22020 1.01665 0.91810 0.90608 0.92691 0.99344 0.95877 0.95150 0.91117 0.91297 0.94349 0.91231 0.95229 0.90849 0.91545 0.91606 0.91804 0.91978 0.92149 0.91893 0.91974 0.91932 0.94371 0.90902 0.95344 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.51 -14.59 9.02 -34.45 -0.31 -14.90 16 8 H 0.08 2.48 7.38 -52.48 -0.39 2.09 16 9 C 0.16 4.02 3.79 -4.98 -0.02 4.01 16 10 N -0.53 -11.39 4.70 -235.92 -1.11 -12.50 16 11 C 0.05 0.97 5.61 -3.76 -0.02 0.94 16 12 C 0.06 0.92 5.61 -3.77 -0.02 0.90 16 13 N -0.54 -7.82 4.51 -234.47 -1.06 -8.88 16 14 C 0.06 0.75 4.01 -3.82 -0.02 0.74 16 15 C -0.09 -0.97 2.87 -89.50 -0.26 -1.22 16 16 C -0.10 -1.10 6.18 -25.03 -0.15 -1.25 16 17 C -0.13 -1.15 6.91 -24.70 -0.17 -1.32 16 18 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 19 C -0.12 -1.08 6.46 -25.61 -0.17 -1.25 16 20 C 0.06 0.91 5.42 -3.77 -0.02 0.89 16 21 C 0.07 1.34 5.43 -3.77 -0.02 1.32 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 24 H 0.02 0.57 7.46 -51.93 -0.39 0.19 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 27 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 30 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.07 0.85 6.30 -51.93 -0.33 0.52 16 32 H 0.07 0.74 7.77 -51.93 -0.40 0.33 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.06 6.25 -51.93 -0.32 0.73 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.98 6.79 -51.93 -0.35 1.62 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -30.03 323.67 -10.65 -40.68 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -8.02 Total: -3.79 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.44 Total: -10.45 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -1.39 Total: -48.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.03 -10.65 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.738 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds