Wall clock time and date at job start Sun Mar 29 2020 22:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46855 * 90.00279 * 9 7 5 11 11 H 1.48499 * 109.47326 * 210.00609 * 9 7 5 12 12 H 1.48497 * 109.46885 * 330.00481 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46846 * 111.00135 * 292.92885 * 16 15 13 18 18 C 1.50147 * 110.28162 * 287.52498 * 17 16 15 19 19 C 1.29827 * 123.28017 * 342.98607 * 18 17 16 20 20 C 1.50308 * 122.89620 * 0.32927 * 19 18 17 21 21 C 1.47249 * 110.99767 * 170.00107 * 16 15 13 22 22 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 23 23 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 24 24 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 26 26 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 27 27 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 28 28 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 29 29 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 31 31 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 32 32 H 1.09001 * 109.33505 * 47.78834 * 17 16 15 33 33 H 1.08998 * 109.33831 * 167.29412 * 17 16 15 34 34 H 1.07995 * 118.35557 * 162.94214 * 18 17 16 35 35 H 1.08001 * 118.54740 * 180.35034 * 19 18 17 36 36 H 1.08995 * 109.42838 * 223.45202 * 20 19 18 37 37 H 1.08999 * 109.42740 * 103.60203 * 20 19 18 38 38 H 1.09002 * 109.63422 * 174.27297 * 21 16 15 39 39 H 1.08993 * 109.63705 * 294.88352 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.7855 3.1610 2.8596 11 1 5.9880 2.1213 4.9001 12 1 6.3686 0.7729 2.9208 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 1.3535 3.3324 -3.6389 18 6 0.0114 2.8613 -4.1197 19 6 -0.1694 1.7312 -4.7325 20 6 0.9499 0.7698 -5.0192 21 6 2.2955 1.4845 -4.8701 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0955 3.1411 1.1383 28 1 1.5816 1.6877 2.0284 29 1 3.6753 3.5170 4.4435 30 1 2.6203 0.4232 -2.5321 31 1 0.9397 1.0094 -2.5279 32 1 1.2499 3.7618 -2.6424 33 1 1.7334 4.0942 -4.3197 34 1 -0.8466 3.4939 -3.9464 35 1 -1.1680 1.4705 -5.0507 36 1 0.8512 0.3913 -6.0365 37 1 0.9017 -0.0626 -4.3171 38 1 2.4286 2.1896 -5.6906 39 1 3.1024 0.7518 -4.8784 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611517605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:12 Heat of formation + Delta-G solvation = -8.919344 kcal Electronic energy + Delta-G solvation = -19376.617285 eV Core-core repulsion = 16512.783114 eV Total energy + Delta-G solvation = -2863.834170 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.97348 -38.18521 -35.20312 -32.91574 -32.52004 -30.85014 -30.05176 -28.57351 -26.45202 -23.79396 -23.08658 -22.87718 -21.83339 -18.71202 -17.38991 -16.77595 -16.40782 -16.11307 -15.32429 -15.00174 -14.52461 -14.32640 -13.82083 -13.74504 -13.32331 -13.17366 -12.74908 -12.52695 -12.25002 -12.02020 -11.90039 -11.62974 -11.52275 -11.18960 -10.97753 -10.86696 -10.76554 -10.66132 -10.48560 -10.07926 -9.57871 -9.06660 -8.77996 -8.39080 -8.07533 -7.57945 -6.00025 -4.04321 2.17939 3.34630 3.40446 3.42004 3.52702 3.75896 4.27938 4.49799 4.78113 4.90414 5.00936 5.14052 5.18791 5.31639 5.34685 5.45779 5.51105 5.58980 5.66434 5.67251 5.77703 5.83435 5.87643 5.89811 6.05751 6.12791 6.25535 6.48408 6.50324 6.80358 7.02498 7.18899 7.22163 7.49817 7.62351 7.97227 8.28926 8.50474 8.96232 9.20264 9.60889 11.08038 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.005646 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.455581 B = 4958.395625 C = 5236.118802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.526 6.526 15 C 0.032 3.968 16 N -0.508 5.508 17 C 0.072 3.928 18 C -0.179 4.179 19 C -0.168 4.168 20 C -0.129 4.129 21 C 0.051 3.949 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 -7.026 -14.868 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.293 3.707 14 O -0.402 6.402 15 C -0.099 4.099 16 N -0.230 5.230 17 C -0.056 4.056 18 C -0.199 4.199 19 C -0.187 4.187 20 C -0.168 4.168 21 C -0.077 4.077 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.766 -6.104 -14.578 17.192 hybrid contribution -0.075 -0.606 0.253 0.661 sum -6.841 -6.711 -14.325 17.235 Atomic orbital electron populations 1.22224 0.96969 1.01298 1.02224 1.21383 0.93352 0.84438 1.02529 1.48252 1.64167 1.13131 1.07711 1.19237 0.96185 0.93591 0.78131 1.21451 0.96940 1.31720 1.06136 0.92481 1.24931 0.97803 0.94974 0.96417 1.69938 1.35598 1.33616 1.14401 0.86504 0.84860 0.78638 0.77446 1.20545 1.21221 1.19957 1.20160 0.78642 0.87156 0.84756 1.90637 1.44894 1.17833 1.86844 1.22117 1.00764 0.96174 0.90808 1.62361 1.49442 1.09417 1.01781 1.21290 0.86759 0.93785 1.03721 1.23085 1.00225 0.97859 0.98704 1.22084 0.99033 0.96446 1.01094 1.21111 0.95241 0.98237 1.02164 1.22321 0.95668 0.97653 0.92060 0.92039 0.93250 0.92259 0.91981 0.89961 0.93977 0.95160 0.92794 0.88794 0.92009 0.87724 0.89587 0.87617 0.88035 0.90721 0.90768 0.90343 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.72 16 3 N -0.60 -12.81 2.46 -175.05 -0.43 -13.24 16 4 C 0.25 6.54 5.17 -5.19 -0.03 6.52 16 5 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.51 10.74 7.28 -10.98 -0.08 10.66 16 14 O -0.53 -13.38 14.08 5.56 0.08 -13.30 16 15 C 0.03 0.51 3.07 -4.98 -0.02 0.50 16 16 N -0.51 -7.83 4.75 -237.55 -1.13 -8.96 16 17 C 0.07 1.08 5.57 -5.27 -0.03 1.05 16 18 C -0.18 -2.23 9.37 -35.96 -0.34 -2.57 16 19 C -0.17 -1.85 9.29 -35.89 -0.33 -2.19 16 20 C -0.13 -1.29 5.54 -28.03 -0.16 -1.44 16 21 C 0.05 0.59 6.02 -3.59 -0.02 0.57 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.66 7.20 -51.93 -0.37 0.28 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.84 6.45 -51.93 -0.33 0.51 16 26 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 27 H 0.04 1.26 7.41 -51.93 -0.38 0.87 16 28 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.09 1.34 7.35 -51.93 -0.38 0.96 16 31 H 0.06 0.89 5.06 -51.93 -0.26 0.62 16 32 H 0.10 1.89 5.87 -51.93 -0.30 1.59 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.10 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.73 7.16 -51.93 -0.37 0.36 16 38 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 311.41 15.07 4.69 4.69 Total: -1.00 -32.87 311.41 -8.31 -41.18 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.18 Total: -0.50 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.06 Total: -0.83 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.82 Total: -48.39 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.87 -8.31 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611517605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.260 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds