Wall clock time and date at job start Sun Mar 29 2020 23:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46818 * 124.36562 * 2 1 4 4 C 1.54585 * 105.50382 * 196.95772 * 3 2 1 5 5 C 1.54130 * 101.64688 * 335.02507 * 4 3 2 6 6 C 1.52542 * 110.07681 * 265.33734 * 5 4 3 7 7 C 1.53141 * 109.32105 * 181.91083 * 6 5 4 8 8 N 1.46846 * 109.46216 * 58.27309 * 7 6 5 9 9 C 1.46898 * 111.00026 * 173.66962 * 8 7 6 10 10 C 1.50700 * 109.47401 * 64.90171 * 9 8 7 11 11 H 1.08007 * 119.99693 * 354.98789 * 10 9 8 12 12 C 1.37874 * 120.00113 * 174.71610 * 10 9 8 13 13 N 1.31516 * 120.00189 * 0.27363 * 12 10 9 14 14 Si 1.86803 * 119.99987 * 180.27140 * 12 10 9 15 15 H 1.48498 * 109.46861 * 90.00224 * 14 12 10 16 16 H 1.48496 * 109.47256 * 210.00211 * 14 12 10 17 17 H 1.48496 * 109.47230 * 330.00186 * 14 12 10 18 18 C 1.46857 * 111.28924 * 297.82974 * 8 7 6 19 19 C 1.52544 * 110.07645 * 143.31494 * 5 4 3 20 20 C 1.34583 * 124.36108 * 180.02562 * 2 1 3 21 21 O 1.21282 * 125.03207 * 359.27292 * 20 2 1 22 22 H 1.08997 * 109.47514 * 179.97438 * 1 2 3 23 23 H 1.09012 * 109.46973 * 299.98056 * 1 2 3 24 24 H 1.08998 * 109.47608 * 59.97803 * 1 2 3 25 25 H 1.09001 * 110.23854 * 315.96958 * 3 2 1 26 26 H 1.09004 * 110.23654 * 77.86071 * 3 2 1 27 27 H 1.08994 * 110.98961 * 216.93149 * 4 3 2 28 28 H 1.08997 * 110.98860 * 93.11495 * 4 3 2 29 29 H 1.09003 * 109.49589 * 61.95361 * 6 5 4 30 30 H 1.09000 * 109.49278 * 301.86833 * 6 5 4 31 31 H 1.08998 * 109.46989 * 298.27063 * 7 6 5 32 32 H 1.09002 * 109.47220 * 178.26539 * 7 6 5 33 33 H 1.08995 * 109.47294 * 304.89733 * 9 8 7 34 34 H 1.09008 * 109.47354 * 184.89917 * 9 8 7 35 35 H 0.96993 * 120.00189 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.47052 * 182.17346 * 18 8 7 37 37 H 1.08997 * 109.47643 * 302.17859 * 18 8 7 38 38 H 1.08999 * 109.49865 * 298.03907 * 19 5 4 39 39 H 1.08995 * 109.49924 * 58.10683 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2937 1.2119 0.0000 4 6 3.7030 0.7487 -0.4345 5 6 3.6847 -0.7354 -0.0189 6 6 4.2995 -0.8987 1.3675 7 6 4.3160 -2.3833 1.7428 8 7 5.0799 -3.1335 0.7379 9 6 5.2453 -4.5362 1.1415 10 6 3.8980 -5.2103 1.1796 11 1 3.0008 -4.6338 1.0083 12 6 3.8110 -6.5637 1.4275 13 7 4.9035 -7.2656 1.6361 14 14 2.1414 -7.4006 1.4671 15 1 1.7956 -7.8800 0.1049 16 1 2.1880 -8.5543 2.4009 17 1 1.1134 -6.4328 1.9271 18 6 4.4553 -3.0376 -0.5877 19 6 4.4437 -1.5750 -1.0417 20 6 2.2245 -1.1110 -0.0005 21 8 1.7977 -2.2462 0.0116 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5136 0.8903 24 1 -0.3634 0.5141 -0.8897 25 1 1.8995 1.9382 -0.7108 26 1 2.3290 1.6445 0.9999 27 1 4.4770 1.2955 0.1041 28 1 3.8327 0.8510 -1.5118 29 1 3.7062 -0.3458 2.0959 30 1 5.3192 -0.5136 1.3608 31 1 3.2940 -2.7604 1.7785 32 1 4.7829 -2.5058 2.7201 33 1 5.7007 -4.5783 2.1309 34 1 5.8872 -5.0476 0.4241 35 1 4.8423 -8.2177 1.8108 36 1 5.0231 -3.6349 -1.3011 37 1 3.4322 -3.4099 -0.5352 38 1 3.9521 -1.4990 -2.0115 39 1 5.4677 -1.2107 -1.1233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618548560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:50 Heat of formation + Delta-G solvation = -29.483050 kcal Electronic energy + Delta-G solvation = -19979.135910 eV Core-core repulsion = 17114.410030 eV Total energy + Delta-G solvation = -2864.725880 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94460 -37.29630 -36.25899 -33.94615 -32.15012 -30.28184 -29.84000 -26.91415 -26.54995 -24.58566 -22.56899 -22.13619 -21.14899 -19.97562 -18.31663 -16.46482 -16.28445 -15.92585 -15.14589 -14.71090 -14.30906 -13.99175 -13.87219 -13.65126 -13.26106 -13.10787 -12.57465 -12.37272 -12.26564 -12.03268 -11.85879 -11.70200 -11.46021 -11.29014 -10.92493 -10.71863 -10.44924 -10.24021 -10.01794 -9.78693 -9.69790 -9.28849 -9.07949 -8.62315 -8.28069 -6.94734 -5.87132 -3.94136 2.88504 3.09962 3.39154 3.44501 3.52371 4.41000 4.49225 4.56204 4.75176 5.01153 5.16048 5.22512 5.27825 5.33093 5.42541 5.44410 5.50377 5.68966 5.74667 5.78785 5.90296 6.07749 6.10707 6.23321 6.32055 6.32860 6.61254 6.62831 6.77847 6.97542 7.11455 7.33434 7.43549 7.69813 8.07358 8.23581 8.46070 8.47543 8.51359 9.19285 9.72346 11.17792 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.007242 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.462145 B = 3865.487630 C = 4525.515111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.635 5.635 3 C 0.106 3.894 4 C -0.127 4.127 5 C -0.087 4.087 6 C -0.092 4.092 7 C 0.057 3.943 8 N -0.539 5.539 9 C 0.187 3.813 10 C -0.541 4.541 11 H 0.065 0.935 12 C 0.062 3.938 13 N -0.897 5.897 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.051 3.949 19 C -0.092 4.092 20 C 0.523 3.477 21 O -0.500 6.500 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.033 0.967 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 19.409 -3.913 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.371 5.371 3 C -0.017 4.017 4 C -0.164 4.164 5 C -0.090 4.090 6 C -0.131 4.131 7 C -0.072 4.072 8 N -0.263 5.263 9 C 0.062 3.938 10 C -0.581 4.581 11 H 0.084 0.916 12 C -0.139 4.139 13 N -0.537 5.537 14 Si 0.715 3.285 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.078 4.078 19 C -0.131 4.131 20 C 0.310 3.690 21 O -0.373 6.373 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.005 18.807 -3.893 19.619 hybrid contribution -1.860 -0.840 0.117 2.045 sum -5.866 17.966 -3.776 19.273 Atomic orbital electron populations 1.21480 0.78718 1.03670 1.00801 1.48261 1.06087 1.07481 1.75295 1.22026 0.91000 0.87325 1.01342 1.22713 0.96159 0.95289 1.02282 1.21036 0.93183 0.95453 0.99371 1.21472 1.00345 0.98644 0.92600 1.21905 0.98475 0.91051 0.95747 1.62462 1.47313 1.15370 1.01160 1.19723 0.96004 0.81816 0.96288 1.21929 0.94297 0.93848 1.47978 0.91645 1.24952 0.96192 0.97506 0.95283 1.69955 1.27193 1.07356 1.49145 0.86665 0.85045 0.79005 0.77777 1.20762 1.21379 1.19924 1.22043 1.00772 0.93145 0.91824 1.21463 0.99317 0.96654 0.95624 1.20828 0.88894 0.84336 0.74953 1.90769 1.78118 1.20428 1.48018 0.89993 0.92538 0.92576 0.90929 0.91475 0.89128 0.90086 0.92511 0.90497 0.93464 0.91850 0.95690 0.94906 0.93088 0.92069 0.91345 0.92559 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 11.15 59.84 0.67 1.71 16 2 N -0.63 -8.32 3.34 -180.35 -0.60 -8.92 16 3 C 0.11 0.99 7.36 -3.04 -0.02 0.97 16 4 C -0.13 -1.26 6.21 -25.31 -0.16 -1.41 16 5 C -0.09 -1.28 0.55 -155.50 -0.09 -1.37 16 6 C -0.09 -1.43 4.76 -26.89 -0.13 -1.56 16 7 C 0.06 1.18 4.89 -3.78 -0.02 1.17 16 8 N -0.54 -12.25 4.84 -235.97 -1.14 -13.40 16 9 C 0.19 5.12 5.12 -4.98 -0.03 5.09 16 10 C -0.54 -16.00 7.73 -34.44 -0.27 -16.27 16 11 H 0.07 2.01 5.87 -52.48 -0.31 1.70 16 12 C 0.06 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 14 Si 0.89 23.16 29.54 -169.99 -5.02 18.14 16 15 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.27 -7.21 7.11 56.52 0.40 -6.81 16 18 C 0.05 1.08 4.79 -3.77 -0.02 1.06 16 19 C -0.09 -1.50 4.77 -26.89 -0.13 -1.62 16 20 C 0.52 8.97 6.33 -11.03 -0.07 8.90 16 21 O -0.50 -11.06 13.60 5.56 0.08 -10.99 16 22 H 0.08 1.06 7.54 -51.93 -0.39 0.67 16 23 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 28 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 1.14 5.42 -51.93 -0.28 0.86 16 32 H 0.06 1.31 8.07 -51.93 -0.42 0.89 16 33 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.03 0.96 8.14 -51.92 -0.42 0.53 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.06 1.33 8.12 -51.93 -0.42 0.91 16 37 H 0.07 1.70 4.39 -51.93 -0.23 1.47 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -34.08 299.87 -8.01 -42.09 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.23 Total: -2.94 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.35 Total: -1.58 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -1.01 Total: -49.25 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.08 -8.01 -42.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618548560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.607 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds