Wall clock time and date at job start Sun Mar 29 2020 23:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46818 * 124.36562 * 2 1 4 4 C 1.54585 * 105.50382 * 196.95772 * 3 2 1 5 5 C 1.54130 * 101.64688 * 335.02507 * 4 3 2 6 6 C 1.52542 * 110.07681 * 265.33734 * 5 4 3 7 7 C 1.53141 * 109.32105 * 181.91083 * 6 5 4 8 8 N 1.46846 * 109.46216 * 58.27309 * 7 6 5 9 9 C 1.46898 * 111.00026 * 173.66962 * 8 7 6 10 10 C 1.50700 * 109.47401 * 64.90171 * 9 8 7 11 11 H 1.08007 * 119.99693 * 354.98789 * 10 9 8 12 12 C 1.37874 * 120.00113 * 174.71610 * 10 9 8 13 13 N 1.31516 * 120.00189 * 0.27363 * 12 10 9 14 14 Si 1.86803 * 119.99987 * 180.27140 * 12 10 9 15 15 H 1.48498 * 109.46861 * 90.00224 * 14 12 10 16 16 H 1.48496 * 109.47256 * 210.00211 * 14 12 10 17 17 H 1.48496 * 109.47230 * 330.00186 * 14 12 10 18 18 C 1.46857 * 111.28924 * 297.82974 * 8 7 6 19 19 C 1.52544 * 110.07645 * 143.31494 * 5 4 3 20 20 C 1.34583 * 124.36108 * 180.02562 * 2 1 3 21 21 O 1.21282 * 125.03207 * 359.27292 * 20 2 1 22 22 H 1.08997 * 109.47514 * 179.97438 * 1 2 3 23 23 H 1.09012 * 109.46973 * 299.98056 * 1 2 3 24 24 H 1.08998 * 109.47608 * 59.97803 * 1 2 3 25 25 H 1.09001 * 110.23854 * 315.96958 * 3 2 1 26 26 H 1.09004 * 110.23654 * 77.86071 * 3 2 1 27 27 H 1.08994 * 110.98961 * 216.93149 * 4 3 2 28 28 H 1.08997 * 110.98860 * 93.11495 * 4 3 2 29 29 H 1.09003 * 109.49589 * 61.95361 * 6 5 4 30 30 H 1.09000 * 109.49278 * 301.86833 * 6 5 4 31 31 H 1.08998 * 109.46989 * 298.27063 * 7 6 5 32 32 H 1.09002 * 109.47220 * 178.26539 * 7 6 5 33 33 H 1.08995 * 109.47294 * 304.89733 * 9 8 7 34 34 H 1.09008 * 109.47354 * 184.89917 * 9 8 7 35 35 H 0.96993 * 120.00189 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.47052 * 182.17346 * 18 8 7 37 37 H 1.08997 * 109.47643 * 302.17859 * 18 8 7 38 38 H 1.08999 * 109.49865 * 298.03907 * 19 5 4 39 39 H 1.08995 * 109.49924 * 58.10683 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2937 1.2119 0.0000 4 6 3.7030 0.7487 -0.4345 5 6 3.6847 -0.7354 -0.0189 6 6 4.2995 -0.8987 1.3675 7 6 4.3160 -2.3833 1.7428 8 7 5.0799 -3.1335 0.7379 9 6 5.2453 -4.5362 1.1415 10 6 3.8980 -5.2103 1.1796 11 1 3.0008 -4.6338 1.0083 12 6 3.8110 -6.5637 1.4275 13 7 4.9035 -7.2656 1.6361 14 14 2.1414 -7.4006 1.4671 15 1 1.7956 -7.8800 0.1049 16 1 2.1880 -8.5543 2.4009 17 1 1.1134 -6.4328 1.9271 18 6 4.4553 -3.0376 -0.5877 19 6 4.4437 -1.5750 -1.0417 20 6 2.2245 -1.1110 -0.0005 21 8 1.7977 -2.2462 0.0116 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5136 0.8903 24 1 -0.3634 0.5141 -0.8897 25 1 1.8995 1.9382 -0.7108 26 1 2.3290 1.6445 0.9999 27 1 4.4770 1.2955 0.1041 28 1 3.8327 0.8510 -1.5118 29 1 3.7062 -0.3458 2.0959 30 1 5.3192 -0.5136 1.3608 31 1 3.2940 -2.7604 1.7785 32 1 4.7829 -2.5058 2.7201 33 1 5.7007 -4.5783 2.1309 34 1 5.8872 -5.0476 0.4241 35 1 4.8423 -8.2177 1.8108 36 1 5.0231 -3.6349 -1.3011 37 1 3.4322 -3.4099 -0.5352 38 1 3.9521 -1.4990 -2.0115 39 1 5.4677 -1.2107 -1.1233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618548560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:50 Heat of formation + Delta-G solvation = -54.852423 kcal Electronic energy + Delta-G solvation = -19980.236008 eV Core-core repulsion = 17114.410030 eV Total energy + Delta-G solvation = -2865.825978 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.12802 -38.88395 -37.49911 -35.57380 -34.12845 -31.77352 -31.11086 -28.47845 -27.82010 -26.19077 -24.10662 -23.85446 -22.17606 -21.62355 -19.66189 -18.43565 -17.46794 -17.09825 -16.92895 -16.18688 -15.91552 -15.64909 -15.24588 -14.81391 -14.76406 -14.44431 -14.16434 -13.62664 -13.44985 -13.30970 -13.29448 -13.01528 -12.97984 -12.82348 -12.73916 -12.49065 -12.08124 -12.02353 -11.86878 -11.79470 -11.24402 -10.98004 -10.63445 -10.45604 -9.61280 -8.94651 -8.16931 -6.35240 1.27248 1.28289 1.41146 1.64325 2.15825 2.33697 3.05059 3.31060 3.50673 3.58914 3.79066 4.07375 4.12386 4.36506 4.41039 4.42533 4.61136 4.66639 4.71005 4.74169 4.78281 4.83822 4.90432 4.93341 5.03463 5.09775 5.20132 5.22306 5.31783 5.33547 5.35584 5.47327 5.72069 5.74938 6.08381 6.17463 6.28669 6.58866 6.87292 7.29711 7.35066 8.84211 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.007242 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.462145 B = 3865.487630 C = 4525.515111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.631 5.631 3 C 0.101 3.899 4 C -0.112 4.112 5 C -0.091 4.091 6 C -0.081 4.081 7 C 0.056 3.944 8 N -0.529 5.529 9 C 0.199 3.801 10 C -0.550 4.550 11 H 0.047 0.953 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.951 3.049 15 H -0.274 1.274 16 H -0.270 1.270 17 H -0.281 1.281 18 C 0.050 3.950 19 C -0.082 4.082 20 C 0.505 3.495 21 O -0.569 6.569 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.006 0.994 32 H 0.056 0.944 33 H 0.004 0.996 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.045 0.955 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 22.925 -4.387 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.365 5.365 3 C -0.020 4.020 4 C -0.149 4.149 5 C -0.094 4.094 6 C -0.119 4.119 7 C -0.073 4.073 8 N -0.252 5.252 9 C 0.072 3.928 10 C -0.589 4.589 11 H 0.066 0.934 12 C -0.186 4.186 13 N -0.565 5.565 14 Si 0.777 3.223 15 H -0.200 1.200 16 H -0.195 1.195 17 H -0.206 1.206 18 C -0.079 4.079 19 C -0.120 4.120 20 C 0.293 3.707 21 O -0.447 6.447 22 H 0.068 0.932 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.124 0.876 26 H 0.105 0.895 27 H 0.140 0.860 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.364 22.397 -4.372 23.233 hybrid contribution -1.779 -1.902 0.269 2.618 sum -6.142 20.495 -4.102 21.785 Atomic orbital electron populations 1.21633 0.77825 1.02392 1.03306 1.48474 1.07053 1.07825 1.73156 1.22395 0.89997 0.86060 1.03588 1.22757 0.97503 0.90864 1.03802 1.21075 0.91194 0.98885 0.98263 1.21425 1.02489 0.94138 0.93823 1.21957 0.95474 0.94721 0.95105 1.62445 1.47954 1.12473 1.02362 1.19398 0.94378 0.84636 0.94346 1.22030 0.94537 0.94302 1.48058 0.93443 1.25730 0.99909 0.98129 0.94881 1.70045 1.29028 1.07872 1.49572 0.85670 0.80305 0.78063 0.78306 1.19995 1.19508 1.20624 1.22041 0.97896 0.97215 0.90732 1.21396 1.01300 0.92751 0.96598 1.21388 0.90525 0.84243 0.74499 1.90740 1.79366 1.23314 1.51302 0.93226 0.90256 0.89706 0.87616 0.89490 0.86036 0.88460 0.90319 0.87861 0.97534 0.92591 0.97740 0.97506 0.92557 0.93669 0.95137 0.91329 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.80 11.15 127.77 1.42 3.22 16 2 N -0.63 -14.90 3.34 -843.00 -2.81 -17.72 16 3 C 0.10 1.33 7.36 86.86 0.64 1.97 16 4 C -0.11 -1.59 6.21 31.52 0.20 -1.40 16 5 C -0.09 -2.44 0.55 -52.82 -0.03 -2.47 16 6 C -0.08 -2.32 4.76 30.49 0.15 -2.17 16 7 C 0.06 2.39 4.89 86.36 0.42 2.81 16 8 N -0.53 -24.96 4.84 -900.47 -4.36 -29.32 16 9 C 0.20 11.54 5.12 85.56 0.44 11.98 16 10 C -0.55 -34.37 7.73 25.60 0.20 -34.17 16 11 H 0.05 3.12 5.87 -2.91 -0.02 3.10 16 12 C 0.01 0.77 5.46 84.65 0.46 1.23 16 13 N -0.92 -58.72 13.29 21.45 0.28 -58.43 16 14 Si 0.95 49.20 29.54 68.60 2.03 51.22 16 15 H -0.27 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 17 H -0.28 -14.73 7.11 99.48 0.71 -14.02 16 18 C 0.05 2.21 4.79 86.36 0.41 2.62 16 19 C -0.08 -2.55 4.77 30.49 0.15 -2.40 16 20 C 0.51 17.08 6.33 87.71 0.56 17.63 16 21 O -0.57 -26.56 13.60 -3.04 -0.04 -26.60 16 22 H 0.05 1.32 7.54 -2.39 -0.02 1.30 16 23 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.12 1.08 7.86 -2.39 -0.02 1.07 16 28 H 0.10 1.15 7.89 -2.39 -0.02 1.13 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.01 0.32 5.42 -2.39 -0.01 0.31 16 32 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 33 H 0.00 0.27 8.08 -2.39 -0.02 0.25 16 34 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.04 2.07 8.12 -2.39 -0.02 2.05 16 37 H 0.03 1.62 4.39 -2.39 -0.01 1.61 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -81.21 299.87 1.12 -80.09 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 1.02 Total: 1.90 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.01 Total: -1.14 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -6.89 Total: -105.47 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.04 Total: -26.60 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.03 Total: 51.22 kcal Total: -81.21 1.12 -80.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618548560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.234 kcal (2) G-P(sol) polarization free energy of solvation -81.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds