Wall clock time and date at job start Sun Mar 29 2020 23:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99896 * 2 1 4 4 H 1.08001 * 119.99690 * 202.53421 * 3 2 1 5 5 C 1.38815 * 120.00137 * 22.52961 * 3 2 1 6 6 N 1.31615 * 119.99483 * 13.65621 * 5 3 2 7 7 Si 1.86797 * 119.99732 * 193.65019 * 5 3 2 8 8 H 1.48495 * 109.47145 * 60.00226 * 7 5 3 9 9 H 1.48498 * 109.46839 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47131 * 300.00246 * 7 5 3 11 11 C 1.46503 * 119.99794 * 179.97438 * 2 1 3 12 12 N 1.46496 * 109.46767 * 90.00516 * 11 2 1 13 13 C 1.37259 * 133.51440 * 269.99428 * 12 11 2 14 14 O 1.21282 * 134.58572 * 348.07659 * 13 12 11 15 15 C 1.49896 * 90.83881 * 168.09618 * 13 12 11 16 16 H 1.08994 * 113.75291 * 257.14348 * 15 13 12 17 17 C 1.55247 * 118.31218 * 120.94027 * 15 13 12 18 18 C 1.49290 * 104.07032 * 201.10095 * 17 15 13 19 19 C 1.51394 * 115.15205 * 57.87094 * 18 17 15 20 20 C 1.50428 * 105.87831 * 264.01451 * 19 18 17 21 21 C 1.57930 * 106.66732 * 103.27904 * 20 19 18 22 22 C 1.44633 * 133.51983 * 90.00395 * 12 11 2 23 23 H 1.08997 * 108.30597 * 83.22239 * 22 12 11 24 24 H 1.08998 * 109.47758 * 275.13501 * 1 2 3 25 25 H 1.09005 * 109.46936 * 35.13546 * 1 2 3 26 26 H 1.09003 * 109.47235 * 155.12929 * 1 2 3 27 27 H 0.97008 * 119.98927 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47201 * 330.00520 * 11 2 1 29 29 H 1.08998 * 109.46820 * 210.00100 * 11 2 1 30 30 H 1.09004 * 110.45641 * 320.01409 * 17 15 13 31 31 H 1.09000 * 110.44964 * 82.61745 * 17 15 13 32 32 H 1.08995 * 108.45134 * 296.33347 * 18 17 15 33 33 H 1.08999 * 108.27995 * 179.27065 * 18 17 15 34 34 H 1.08997 * 110.16097 * 144.93185 * 19 18 17 35 35 H 1.09003 * 110.27082 * 23.15960 * 19 18 17 36 36 H 1.09005 * 110.00883 * 343.99548 * 20 19 18 37 37 H 1.08991 * 110.09323 * 222.61548 * 20 19 18 38 38 H 1.09004 * 111.18181 * 207.76445 * 21 20 19 39 39 H 1.08999 * 111.22639 * 83.49879 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1679 1.2216 -0.3585 5 6 1.5351 2.3422 0.4606 6 7 0.4104 2.2638 1.1397 7 14 2.3044 4.0093 0.1167 8 1 2.4032 4.2157 -1.3505 9 1 1.4599 5.0763 0.7113 10 1 3.6619 4.0612 0.7164 11 6 2.1975 -1.2688 0.0006 12 7 2.4417 -1.6922 -1.3805 13 6 1.7372 -2.4631 -2.2712 14 8 0.7783 -3.2007 -2.1863 15 6 2.6320 -2.0254 -3.3914 16 1 2.1856 -1.2730 -4.0415 17 6 3.4188 -3.1120 -4.1726 18 6 4.5467 -2.3622 -4.8008 19 6 5.4447 -1.6211 -3.8331 20 6 4.9349 -0.2062 -3.7998 21 6 4.1255 -0.0480 -2.4529 22 6 3.5161 -1.4557 -2.3195 23 1 4.3127 -2.1710 -2.1154 24 1 -0.3634 0.0920 1.0235 25 1 -0.3633 0.8405 -0.5915 26 1 -0.3634 -0.9324 -0.4322 27 1 -0.0192 3.0719 1.4613 28 1 1.6084 -2.0282 0.5146 29 1 3.1499 -1.1382 0.5144 30 1 3.7944 -3.8748 -3.4905 31 1 2.7880 -3.5617 -4.9394 32 1 4.1317 -1.6408 -5.5046 33 1 5.1572 -3.0698 -5.3618 34 1 6.4754 -1.6407 -4.1869 35 1 5.3800 -2.0672 -2.8407 36 1 4.2798 -0.0256 -4.6521 37 1 5.7705 0.4933 -3.8172 38 1 3.3481 0.7103 -2.5473 39 1 4.7892 0.1746 -1.6174 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749947155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:46 Heat of formation + Delta-G solvation = 38.401137 kcal Electronic energy + Delta-G solvation = -19892.427326 eV Core-core repulsion = 17030.645126 eV Total energy + Delta-G solvation = -2861.782200 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31434 -37.42929 -35.88304 -34.72946 -32.31520 -31.35804 -28.96784 -26.63273 -25.71370 -24.52674 -23.53950 -21.60423 -20.68153 -20.02253 -17.95136 -16.92454 -16.58150 -15.82377 -15.18985 -14.70598 -14.47729 -14.29594 -13.72352 -13.57815 -13.41311 -12.90968 -12.75641 -12.52415 -12.13723 -11.92246 -11.52490 -11.04791 -10.98483 -10.96230 -10.79921 -10.56903 -10.47919 -10.41452 -10.32082 -10.22826 -9.93918 -9.87079 -9.25021 -8.63315 -7.92649 -6.95114 -5.81432 -3.29422 3.00332 3.31603 3.38702 3.39217 3.70096 4.42479 4.49694 4.62677 4.78427 4.94704 5.05198 5.22114 5.34963 5.36844 5.42860 5.45877 5.61040 5.69639 5.82963 5.84740 5.96186 5.99823 6.08645 6.15976 6.20911 6.25965 6.36405 6.38537 6.53096 6.71665 6.79005 7.28086 7.33597 7.46534 7.68958 7.74296 8.28989 8.88265 9.12771 9.75446 10.24181 11.23052 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.007952 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.169653 B = 3520.339510 C = 4451.774329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.585 5.585 3 C -0.265 4.265 4 H 0.073 0.927 5 C 0.007 3.993 6 N -0.901 5.901 7 Si 0.904 3.096 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.363 3.637 12 N -0.631 5.631 13 C 0.525 3.475 14 O -0.522 6.522 15 C -0.147 4.147 16 H 0.115 0.885 17 C -0.094 4.094 18 C -0.121 4.121 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.109 4.109 22 C 0.117 3.883 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.001 0.999 27 H 0.255 0.745 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.719 -6.827 -9.754 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.307 5.307 3 C -0.395 4.395 4 H 0.091 0.909 5 C -0.192 4.192 6 N -0.545 5.545 7 Si 0.733 3.267 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.156 3.844 12 N -0.373 5.373 13 C 0.311 3.689 14 O -0.397 6.397 15 C -0.169 4.169 16 H 0.133 0.867 17 C -0.132 4.132 18 C -0.159 4.159 19 C -0.179 4.179 20 C -0.162 4.162 21 C -0.147 4.147 22 C 0.012 3.988 23 H 0.091 0.909 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.014 -6.984 -9.311 14.722 hybrid contribution 0.301 1.210 -0.164 1.257 sum 9.315 -5.774 -9.475 14.487 Atomic orbital electron populations 1.20867 0.82482 0.95828 0.99653 1.44528 1.02347 1.01350 1.82472 1.19193 0.98081 0.85442 1.36737 0.90886 1.25043 0.97667 0.98608 0.97911 1.70084 1.19338 1.27464 1.37593 0.86361 0.78487 0.83767 0.78079 1.20955 1.21585 1.20784 1.20679 0.96164 0.87589 0.80004 1.52948 1.21432 1.48185 1.14756 1.22060 0.82109 0.78766 0.85936 1.90642 1.27356 1.37898 1.83808 1.23373 0.96231 0.99591 0.97700 0.86703 1.21165 0.96389 0.96239 0.99455 1.20860 0.96637 0.99650 0.98721 1.21441 0.98472 0.96596 1.01425 1.22340 0.99496 0.96313 0.98043 1.22749 0.99588 0.95534 0.96833 1.22122 0.91235 0.97988 0.87410 0.90856 0.94552 0.94109 0.97999 0.93525 0.92016 0.91086 0.91221 0.90701 0.91835 0.92924 0.92114 0.89182 0.91436 0.92224 0.89512 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.98 59.85 0.54 4.55 16 2 N -0.58 -14.55 3.16 -184.85 -0.58 -15.13 16 3 C -0.27 -6.92 9.52 -15.06 -0.14 -7.06 16 4 H 0.07 1.80 6.34 -52.49 -0.33 1.47 16 5 C 0.01 0.19 5.09 -17.43 -0.09 0.10 16 6 N -0.90 -25.93 10.72 55.49 0.59 -25.33 16 7 Si 0.90 21.20 29.58 -169.99 -5.03 16.17 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 C 0.36 7.60 7.32 -63.75 -0.47 7.13 16 12 N -0.63 -11.87 3.59 -193.59 -0.69 -12.56 16 13 C 0.53 10.11 9.39 -14.70 -0.14 9.97 16 14 O -0.52 -11.79 18.03 5.56 0.10 -11.69 16 15 C -0.15 -2.14 3.49 -92.53 -0.32 -2.47 16 16 H 0.12 1.67 8.14 -51.93 -0.42 1.24 16 17 C -0.09 -1.06 5.93 -27.37 -0.16 -1.22 16 18 C -0.12 -1.16 5.03 -29.37 -0.15 -1.30 16 19 C -0.14 -1.41 5.64 -28.83 -0.16 -1.57 16 20 C -0.12 -1.39 5.95 -25.31 -0.15 -1.54 16 21 C -0.11 -1.59 6.16 -23.52 -0.14 -1.74 16 22 C 0.12 1.75 2.71 -74.29 -0.20 1.54 16 23 H 0.07 0.99 4.74 -51.93 -0.25 0.74 16 24 H 0.04 0.99 7.35 -51.93 -0.38 0.61 16 25 H 0.04 1.11 7.33 -51.93 -0.38 0.73 16 26 H 0.00 0.03 8.03 -51.93 -0.42 -0.38 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.06 1.29 8.07 -51.93 -0.42 0.87 16 29 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 30 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.60 6.79 -51.93 -0.35 0.25 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.95 4.64 -51.93 -0.24 0.71 16 36 H 0.07 0.74 6.76 -51.93 -0.35 0.39 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.53 7.73 -51.93 -0.40 1.13 16 39 H 0.08 1.14 7.98 -51.93 -0.41 0.73 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -30.36 302.42 -8.67 -39.02 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.02 Total: -1.44 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.59 Total: 6.41 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.68 Total: -53.03 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.10 Total: -11.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.36 -8.67 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749947155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.424 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds