Wall clock time and date at job start Sun Mar 29 2020 22:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50697 * 119.99937 * 2 1 4 4 C 1.52994 * 109.47344 * 295.00033 * 3 2 1 5 5 C 1.53008 * 109.47344 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47268 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99819 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00068 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00289 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00400 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47055 * 59.99966 * 10 8 6 12 12 H 1.48500 * 109.47474 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47014 * 300.00555 * 10 8 6 14 14 N 1.28008 * 119.99922 * 180.02562 * 2 1 3 15 15 N 1.40103 * 119.99615 * 0.02562 * 14 2 1 16 16 C 1.34780 * 119.99524 * 180.02562 * 15 14 2 17 17 O 1.21303 * 120.00316 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 15 20 20 C 1.53000 * 117.50165 * 243.62141 * 19 18 16 21 21 C 1.52994 * 59.99907 * 252.50793 * 20 19 18 22 22 H 1.08997 * 109.46884 * 270.00048 * 1 2 3 23 23 H 1.09001 * 109.46689 * 29.99688 * 1 2 3 24 24 H 1.08988 * 109.47167 * 149.99675 * 1 2 3 25 25 H 1.09005 * 109.47332 * 55.00512 * 3 2 1 26 26 H 1.09004 * 109.46843 * 174.99915 * 3 2 1 27 27 H 1.08997 * 109.47404 * 299.99870 * 4 3 2 28 28 H 1.09004 * 109.47247 * 60.00129 * 4 3 2 29 29 H 1.08997 * 109.46586 * 300.00153 * 5 4 3 30 30 H 1.08996 * 109.46907 * 60.00055 * 5 4 3 31 31 H 0.97000 * 120.00500 * 179.97438 * 9 8 6 32 32 H 0.96995 * 120.00466 * 359.97438 * 15 14 2 33 33 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 34 34 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 35 35 H 1.09003 * 115.54795 * 29.32506 * 19 18 16 36 36 H 1.09001 * 117.49810 * 359.97438 * 20 19 18 37 37 H 1.08995 * 117.50134 * 145.01745 * 20 19 18 38 38 H 1.09004 * 117.49933 * 252.50827 * 21 20 19 39 39 H 1.09002 * 117.49788 * 107.49222 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0516 -1.3073 5 6 2.7531 3.3764 -1.3075 6 6 2.4848 4.1114 -2.5955 7 1 1.8330 3.6772 -3.3393 8 6 3.0704 5.3384 -2.8238 9 7 3.8637 5.8674 -1.9179 10 14 2.7373 6.2499 -4.4200 11 1 1.2819 6.5188 -4.5420 12 1 3.4804 7.5356 -4.4203 13 1 3.1851 5.4196 -5.5669 14 7 2.1471 -1.1086 -0.0005 15 7 1.4465 -2.3219 -0.0016 16 6 2.1204 -3.4891 -0.0016 17 8 3.3334 -3.4892 -0.0011 18 6 1.3668 -4.7942 -0.0022 19 6 2.3610 -5.9571 -0.0027 20 6 2.3618 -6.8854 -1.2189 21 6 1.7925 -7.3727 0.1150 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5138 25 1 1.9318 1.9145 0.8419 26 1 3.3288 1.1078 0.0896 27 1 2.3164 1.4423 -2.1491 28 1 0.9193 2.2488 -1.3969 29 1 2.4247 3.9858 -0.4657 30 1 3.8213 3.1787 -1.2182 31 1 4.2760 6.7305 -2.0787 32 1 0.4765 -2.3219 -0.0016 33 1 0.7399 -4.8521 0.8876 34 1 0.7405 -4.8517 -0.8924 35 1 3.3182 -5.7575 0.4791 36 1 1.6537 -6.6679 -2.0185 37 1 3.3195 -7.2966 -1.5376 38 1 2.3758 -8.1045 0.6739 39 1 0.7101 -7.4755 0.1927 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841640899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:01 Heat of formation + Delta-G solvation = 2.626967 kcal Electronic energy + Delta-G solvation = -17450.836808 eV Core-core repulsion = 14587.503324 eV Total energy + Delta-G solvation = -2863.333485 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88998 -37.96044 -37.00439 -34.65545 -32.98167 -31.46164 -29.83575 -28.21530 -27.21753 -23.77019 -22.68838 -21.76647 -20.39602 -20.25504 -19.35885 -17.42476 -16.39888 -16.12643 -15.94208 -15.40435 -14.58191 -14.39340 -14.35639 -13.89794 -13.76975 -13.60604 -12.88324 -12.39441 -12.05523 -11.84125 -11.80062 -11.77068 -11.52568 -11.32515 -10.80195 -10.70404 -10.67306 -10.56570 -10.35348 -10.06770 -9.87991 -9.66599 -9.36108 -9.12048 -8.58330 -8.32777 -5.98083 -4.00561 1.92232 2.51855 2.84732 3.34405 3.39044 3.41292 3.49396 4.30855 4.34533 4.47154 4.59211 4.68699 4.77856 4.95228 5.05672 5.12312 5.17702 5.28120 5.32378 5.35957 5.37696 5.58971 5.79779 5.84068 5.86567 5.99350 6.00663 6.05720 6.45844 6.68382 6.83426 7.09195 7.13570 7.63727 7.68885 7.83708 8.01825 8.43659 8.47186 9.06203 9.63316 11.13177 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039453 B = 0.002923 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.539246 B = 9578.261912 C = 9784.430191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.116 3.884 3 C -0.066 4.066 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.252 5.252 15 N -0.593 5.593 16 C 0.529 3.471 17 O -0.506 6.506 18 C -0.104 4.104 19 C -0.142 4.142 20 C -0.178 4.178 21 C -0.180 4.180 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.381 0.619 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 -21.691 5.586 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.077 4.077 3 C -0.106 4.106 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.560 4.560 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.056 5.056 15 N -0.336 5.336 16 C 0.315 3.685 17 O -0.377 6.377 18 C -0.146 4.146 19 C -0.161 4.161 20 C -0.215 4.215 21 C -0.217 4.217 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.220 0.780 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.290 -22.118 5.628 24.282 hybrid contribution -1.567 0.805 -0.931 1.993 sum -9.857 -21.314 4.696 23.947 Atomic orbital electron populations 1.21405 0.93284 1.04076 1.03336 1.25491 0.94431 0.94407 0.93403 1.20704 1.00076 0.88713 1.01090 1.21633 1.00632 0.98372 0.93499 1.19105 0.95452 0.89949 0.97100 1.21202 1.28468 1.03369 1.02920 0.92789 1.25019 0.95203 0.97563 0.96670 1.69951 1.31205 1.18018 1.34261 0.86668 0.78287 0.79034 0.84058 1.20282 1.21298 1.20271 1.74690 1.24227 0.91055 1.15615 1.47090 1.08345 1.03738 1.74456 1.20489 0.88456 0.83623 0.75930 1.90714 1.13897 1.86898 1.46228 1.21209 0.98234 0.90615 1.04523 1.22046 1.01003 0.89354 1.03656 1.23051 1.03012 1.03811 0.91581 1.23005 1.00915 0.96844 1.00889 0.89994 0.88815 0.92107 0.89693 0.90043 0.93120 0.92985 0.96374 0.96325 0.92937 0.78022 0.88267 0.88578 0.86173 0.88764 0.88585 0.88578 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.46 36.01 0.34 -1.34 16 2 C 0.12 1.69 6.55 -78.91 -0.52 1.18 16 3 C -0.07 -1.10 5.60 -27.89 -0.16 -1.25 16 4 C -0.10 -2.02 5.03 -26.73 -0.13 -2.16 16 5 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 6 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 7 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 N -0.25 -4.15 10.93 35.60 0.39 -3.76 16 15 N -0.59 -7.66 6.09 31.22 0.19 -7.47 16 16 C 0.53 7.07 7.95 -10.98 -0.09 6.98 16 17 O -0.51 -9.21 15.90 5.54 0.09 -9.12 16 18 C -0.10 -0.86 5.98 -27.88 -0.17 -1.03 16 19 C -0.14 -1.29 5.41 -90.62 -0.49 -1.78 16 20 C -0.18 -1.40 10.18 -26.73 -0.27 -1.67 16 21 C -0.18 -1.21 10.25 -26.74 -0.27 -1.48 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.09 0.99 6.91 -51.93 -0.36 0.63 16 24 H 0.06 0.53 6.31 -51.94 -0.33 0.20 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.95 7.01 -51.93 -0.36 0.59 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 3.45 6.38 -182.60 -1.17 2.28 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.60 7.87 -51.93 -0.41 0.19 16 35 H 0.12 1.35 7.30 -51.93 -0.38 0.97 16 36 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -34.40 330.28 -8.14 -42.54 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.19 Total: -2.01 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.31 Total: -15.61 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 1.32 Total: -37.41 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.40 -8.14 -42.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841640899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.164 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds