Wall clock time and date at job start Sun Mar 29 2020 23:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47588 * 2 1 4 4 N 1.46499 * 109.47752 * 179.97438 * 3 2 1 5 5 C 1.35308 * 125.86870 * 124.70831 * 4 3 2 6 6 C 1.35349 * 106.17778 * 179.90811 * 5 4 3 7 7 C 1.50699 * 126.75673 * 180.12819 * 6 5 4 8 8 N 1.46903 * 109.47061 * 95.24678 * 7 6 5 9 9 C 1.46903 * 111.00043 * 293.95592 * 8 7 6 10 10 C 1.53003 * 109.46876 * 164.02247 * 9 8 7 11 11 C 1.46897 * 111.00058 * 170.00227 * 8 7 6 12 12 C 1.50698 * 109.47316 * 284.31811 * 11 8 7 13 13 H 1.08000 * 119.99740 * 4.66204 * 12 11 8 14 14 C 1.37871 * 120.00166 * 184.66134 * 12 11 8 15 15 N 1.31520 * 120.00272 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00060 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47053 * 60.00581 * 16 14 12 18 18 H 1.48501 * 109.47263 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47429 * 300.00498 * 16 14 12 20 20 N 1.33774 * 106.49323 * 0.35600 * 6 5 4 21 21 N 1.28631 * 108.88395 * 359.77536 * 20 6 5 22 22 H 1.08997 * 109.47376 * 59.99889 * 1 2 3 23 23 H 1.08996 * 109.47129 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47219 * 299.99894 * 1 2 3 25 25 H 1.09007 * 109.47356 * 120.00153 * 2 1 3 26 26 H 1.09005 * 109.47219 * 240.00106 * 2 1 3 27 27 H 1.09007 * 109.46897 * 300.00434 * 3 2 1 28 28 H 1.09005 * 109.46754 * 59.99821 * 3 2 1 29 29 H 1.08001 * 126.91266 * 0.02993 * 5 4 3 30 30 H 1.08993 * 109.47159 * 215.24756 * 7 6 5 31 31 H 1.09002 * 109.46974 * 335.25075 * 7 6 5 32 32 H 1.08995 * 109.47207 * 284.02619 * 9 8 7 33 33 H 1.09001 * 109.46856 * 44.02719 * 9 8 7 34 34 H 1.08995 * 109.46859 * 59.36377 * 10 9 8 35 35 H 1.08998 * 109.46942 * 179.36124 * 10 9 8 36 36 H 1.08995 * 109.46850 * 299.35809 * 10 9 8 37 37 H 1.09001 * 109.47057 * 44.31696 * 11 8 7 38 38 H 1.08994 * 109.47250 * 164.31602 * 11 8 7 39 39 H 0.96995 * 120.00152 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2982 2.0667 -0.9005 6 6 5.5724 1.8089 -0.5239 7 6 6.8286 2.2860 -1.2061 8 7 7.3035 3.5139 -0.5545 9 6 6.3553 4.6176 -0.7564 10 6 6.6594 5.7397 0.2384 11 6 8.6444 3.8781 -1.0311 12 6 9.6666 2.9697 -0.3979 13 1 9.3464 2.1517 0.2305 14 6 11.0104 3.1827 -0.6207 15 7 11.4003 4.1791 -1.3854 16 14 12.2774 2.0571 0.1649 17 1 12.0541 0.6630 -0.2955 18 1 13.6406 2.4962 -0.2276 19 1 12.1447 2.1175 1.6427 20 7 5.4974 1.0429 0.5703 21 7 4.2589 0.8440 0.8551 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.9789 2.6544 -1.7485 30 1 7.5964 1.5158 -1.1335 31 1 6.6168 2.4902 -2.2557 32 1 6.4514 4.9978 -1.7734 33 1 5.3390 4.2571 -0.5978 34 1 7.6796 6.0924 0.0874 35 1 5.9631 6.5633 0.0810 36 1 6.5521 5.3624 1.2554 37 1 8.6860 3.7718 -2.1152 38 1 8.8586 4.9115 -0.7589 39 1 12.3457 4.3293 -1.5419 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876563376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:37 Heat of formation + Delta-G solvation = 92.888559 kcal Electronic energy + Delta-G solvation = -18523.124301 eV Core-core repulsion = 15695.997604 eV Total energy + Delta-G solvation = -2827.126697 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.98176 -37.08134 -36.01220 -32.72087 -32.50249 -31.47363 -29.83899 -27.40756 -26.91033 -24.82434 -22.86261 -22.52137 -21.53537 -20.78679 -19.52945 -17.19115 -16.50761 -16.22716 -15.40685 -14.88444 -14.69128 -14.50607 -13.95956 -13.81858 -13.45592 -13.24012 -12.78399 -12.52548 -12.11487 -11.88652 -11.73543 -11.54362 -11.28159 -11.19116 -11.04371 -10.94627 -10.72923 -10.57299 -10.32538 -10.19135 -9.83216 -9.58469 -9.21702 -8.82516 -8.32459 -7.18721 -5.93501 -3.93620 1.80931 2.44563 2.91201 3.43251 3.45563 3.51261 4.19102 4.39151 4.52725 4.62872 4.70451 4.90954 4.99085 5.04605 5.18404 5.22038 5.42656 5.45961 5.55135 5.59287 5.70708 5.74369 5.84005 5.95990 6.11333 6.26087 6.33922 6.38905 6.60024 6.69309 6.77263 6.86294 7.28977 7.37680 7.93011 8.18685 8.26211 8.62526 8.85866 9.15330 9.70434 11.17094 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.004526 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.661418 B = 6184.915667 C = 6766.425625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.118 3.882 4 N -0.298 5.298 5 C -0.062 4.062 6 C 0.012 3.988 7 C 0.143 3.857 8 N -0.528 5.528 9 C 0.050 3.950 10 C -0.142 4.142 11 C 0.193 3.807 12 C -0.502 4.502 13 H 0.065 0.935 14 C 0.055 3.945 15 N -0.903 5.903 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.276 1.276 20 N -0.247 5.247 21 N -0.095 5.095 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.183 0.817 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.022 0.978 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.055 0.945 37 H -0.010 1.010 38 H 0.039 0.961 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.401 -3.176 -1.236 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.004 4.004 4 N -0.093 5.093 5 C -0.212 4.212 6 C -0.126 4.126 7 C 0.013 3.987 8 N -0.254 5.254 9 C -0.079 4.079 10 C -0.200 4.200 11 C 0.068 3.932 12 C -0.541 4.541 13 H 0.084 0.916 14 C -0.146 4.146 15 N -0.543 5.543 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.202 1.202 20 N -0.114 5.114 21 N -0.074 5.074 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.200 0.800 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.007 0.993 38 H 0.057 0.943 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.178 -4.052 0.466 21.567 hybrid contribution 0.468 0.417 -1.482 1.609 sum -20.710 -3.635 -1.016 21.051 Atomic orbital electron populations 1.21699 0.94078 1.02691 1.02225 1.21821 0.96725 0.94790 1.04269 1.22102 0.73502 0.99872 1.04882 1.47325 1.08627 1.34257 1.19049 1.23364 0.91232 1.06363 1.00283 1.22203 0.95090 0.99800 0.95543 1.20235 0.91010 0.94902 0.92584 1.62086 1.03787 1.01159 1.58324 1.22018 0.96139 0.92886 0.96829 1.21729 1.01685 0.96759 0.99834 1.19795 0.82524 0.97591 0.93276 1.21195 0.90160 1.13557 1.29193 0.91642 1.24967 0.98536 0.95621 0.95479 1.69949 1.15852 1.30060 1.38444 0.86569 0.80048 0.80954 0.79914 1.20230 1.21548 1.20160 1.75129 1.08402 1.14789 1.13095 1.78248 0.96764 1.17506 1.14924 0.92338 0.91761 0.92141 0.89948 0.91108 0.88051 0.88626 0.79972 0.88179 0.94392 0.96015 0.92726 0.91873 0.93835 0.92570 0.99254 0.94325 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.15 0.37 -0.37 16 2 C -0.14 -1.01 6.06 -26.73 -0.16 -1.17 16 3 C 0.12 0.93 6.46 -4.04 -0.03 0.90 16 4 N -0.30 -3.94 3.44 -61.26 -0.21 -4.15 16 5 C -0.06 -0.85 10.14 -17.05 -0.17 -1.03 16 6 C 0.01 0.22 6.02 -82.78 -0.50 -0.27 16 7 C 0.14 2.84 5.35 -4.97 -0.03 2.81 16 8 N -0.53 -11.70 4.37 -237.52 -1.04 -12.74 16 9 C 0.05 0.92 5.55 -3.82 -0.02 0.90 16 10 C -0.14 -2.54 9.99 37.16 0.37 -2.16 16 11 C 0.19 5.04 4.59 -4.98 -0.02 5.01 16 12 C -0.50 -14.45 8.61 -34.44 -0.30 -14.74 16 13 H 0.07 1.91 7.66 -52.49 -0.40 1.51 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 16 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 N -0.25 -4.98 12.41 33.29 0.41 -4.57 16 21 N -0.10 -1.64 12.91 60.35 0.78 -0.86 16 22 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.52 8.07 -51.93 -0.42 0.10 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.10 2.21 7.32 -51.93 -0.38 1.83 16 31 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 33 H 0.05 0.90 5.86 -51.93 -0.30 0.59 16 34 H 0.06 1.24 6.52 -51.93 -0.34 0.91 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H -0.01 -0.28 8.00 -51.93 -0.42 -0.70 16 38 H 0.04 1.07 6.24 -51.93 -0.32 0.75 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -33.46 322.73 -6.42 -39.88 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -6.36 Total: -4.78 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -0.58 Total: -8.64 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.68 Total: -48.67 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.46 -6.42 -39.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876563376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.769 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds