Wall clock time and date at job start Sun Mar 29 2020 23:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95659 * 2 1 4 4 C 1.33241 * 109.82716 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47316 * 15.00149 * 5 4 3 7 7 C 1.52999 * 109.47320 * 254.99765 * 5 4 3 8 8 N 1.46906 * 109.47026 * 134.99756 * 5 4 3 9 9 C 1.46893 * 111.00055 * 205.00055 * 8 5 4 10 10 C 1.53003 * 109.47002 * 180.02562 * 9 8 5 11 11 H 1.08996 * 109.47501 * 54.99964 * 10 9 8 12 12 C 1.53008 * 109.46750 * 294.99502 * 10 9 8 13 13 C 1.53001 * 109.47003 * 175.00147 * 10 9 8 14 14 C 1.50703 * 109.47139 * 184.99434 * 13 10 9 15 15 H 1.07998 * 119.99899 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00017 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00116 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46948 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47311 * 119.99935 * 18 16 14 21 21 H 1.48495 * 109.47324 * 240.00237 * 18 16 14 22 22 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 23 23 N 1.34428 * 125.96307 * 179.97438 * 2 1 3 24 24 H 0.96998 * 126.82131 * 0.02562 * 23 2 1 25 25 H 1.09005 * 109.47279 * 90.00387 * 1 2 3 26 26 H 1.09000 * 109.47450 * 210.00065 * 1 2 3 27 27 H 1.08997 * 109.47789 * 330.00215 * 1 2 3 28 28 H 1.08999 * 109.46771 * 59.99642 * 7 5 4 29 29 H 1.08994 * 109.47116 * 179.97438 * 7 5 4 30 30 H 1.08997 * 109.47240 * 300.00430 * 7 5 4 31 31 H 1.00892 * 111.00336 * 328.95928 * 8 5 4 32 32 H 1.09006 * 109.47169 * 299.99792 * 9 8 5 33 33 H 1.08993 * 109.47364 * 60.00111 * 9 8 5 34 34 H 1.08999 * 109.47133 * 300.00095 * 12 10 9 35 35 H 1.08995 * 109.46562 * 60.00648 * 12 10 9 36 36 H 1.08997 * 109.46659 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47260 * 304.99459 * 13 10 9 38 38 H 1.08997 * 109.47502 * 64.99284 * 13 10 9 39 39 H 0.97000 * 120.00495 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0591 0.0000 4 6 3.5551 0.6889 0.0006 5 6 4.7371 1.6238 0.0002 6 1 4.4062 2.6279 0.2654 7 6 5.3691 1.6464 -1.3930 8 7 5.7284 1.1602 0.9802 9 6 6.5667 2.2722 1.4474 10 6 7.5849 1.7513 2.4638 11 1 8.1543 0.9339 2.0215 12 6 6.8511 1.2470 3.7081 13 6 8.5375 2.8822 2.8568 14 6 9.6137 2.3407 3.7623 15 1 9.6180 1.2945 4.0301 16 6 10.5933 3.1807 4.2477 17 7 10.5884 4.4546 3.9211 18 14 11.9276 2.5093 5.3694 19 1 11.7103 1.0558 5.5823 20 1 13.2562 2.7239 4.7418 21 1 11.8775 3.2143 6.6754 22 7 3.6194 -0.6167 0.0015 23 7 2.2964 -1.0881 0.0005 24 1 2.0093 -2.0146 0.0006 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 4.6335 1.9904 -2.1201 29 1 6.2237 2.3229 -1.3933 30 1 5.7000 0.6423 -1.6582 31 1 5.2805 0.6946 1.7551 32 1 7.0924 2.7121 0.5998 33 1 5.9382 3.0286 1.9173 34 1 6.2818 2.0645 4.1504 35 1 6.1725 0.4414 3.4280 36 1 7.5765 0.8764 4.4323 37 1 8.9940 3.3010 1.9600 38 1 7.9814 3.6609 3.3788 39 1 11.2778 5.0456 4.2623 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894774854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:30 Heat of formation + Delta-G solvation = 39.040116 kcal Electronic energy + Delta-G solvation = -18185.249289 eV Core-core repulsion = 15355.787548 eV Total energy + Delta-G solvation = -2829.461741 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.20225 -38.82209 -36.45172 -34.48487 -33.37595 -33.23430 -30.81715 -28.85355 -28.67082 -27.07833 -25.25037 -23.89355 -22.00915 -21.10513 -20.55627 -18.92681 -18.48335 -17.16805 -16.82646 -16.56046 -15.90838 -15.62581 -15.01587 -14.83047 -14.54289 -14.19405 -13.81830 -13.65994 -13.62635 -13.31719 -13.18067 -12.92493 -12.77637 -12.67537 -12.61575 -12.30431 -12.21501 -11.88892 -11.49341 -11.17133 -11.11168 -11.06631 -10.92939 -10.52152 -10.49883 -9.45369 -8.15820 -6.24546 0.57032 1.40656 1.41225 1.54272 1.71489 1.75435 2.43253 2.78711 3.17608 3.21593 3.64766 3.87970 4.15508 4.21379 4.25282 4.38622 4.46458 4.67437 4.70943 4.72986 4.76155 4.87049 4.91945 5.02223 5.05060 5.21008 5.23371 5.26242 5.34596 5.38007 5.46856 5.57062 5.80521 5.90944 5.99707 6.21895 6.31816 6.34421 6.91286 7.07516 7.43423 8.96475 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.045743 B = 0.003549 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.962623 B = 7887.122435 C = 8109.066884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.285 3.715 3 N -0.572 5.572 4 C 0.216 3.784 5 C 0.176 3.824 6 H 0.067 0.933 7 C -0.126 4.126 8 N -0.674 5.674 9 C 0.077 3.923 10 C -0.074 4.074 11 H 0.058 0.942 12 C -0.126 4.126 13 C 0.034 3.966 14 C -0.528 4.528 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.961 3.039 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.279 1.279 22 N -0.318 5.318 23 N -0.476 5.476 24 H 0.456 0.544 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.340 0.660 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.047 0.953 37 H -0.010 1.010 38 H -0.009 1.009 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.988 -10.756 -8.943 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 N -0.303 5.303 4 C -0.067 4.067 5 C 0.064 3.936 6 H 0.085 0.915 7 C -0.185 4.185 8 N -0.307 5.307 9 C -0.052 4.052 10 C -0.093 4.093 11 H 0.076 0.924 12 C -0.183 4.183 13 C -0.003 4.003 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.786 3.214 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.205 1.205 22 N -0.148 5.148 23 N -0.196 5.196 24 H 0.304 0.696 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.009 0.991 38 H 0.010 0.990 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.891 -10.850 -9.396 25.347 hybrid contribution 0.114 0.000 1.169 1.175 sum -20.777 -10.851 -8.227 24.842 Atomic orbital electron populations 1.20650 0.79901 1.06535 1.06150 1.25290 0.98308 0.81981 0.93651 1.70351 1.01377 1.31489 1.27121 1.24227 0.93326 0.90476 0.98717 1.19799 0.84931 0.93284 0.95575 0.91518 1.21699 1.00762 1.02722 0.93322 1.60627 1.23721 1.28153 1.18208 1.21968 0.94460 0.91308 0.97495 1.21008 0.95341 0.98221 0.94749 0.92390 1.21637 0.99308 0.99760 0.97605 1.18991 0.93372 0.93368 0.94619 1.21665 1.10613 0.95448 1.28863 0.92218 1.25937 1.00548 0.95136 0.98324 1.70105 1.35590 1.05182 1.46694 0.85460 0.78714 0.78853 0.78404 1.18695 1.20529 1.20509 1.78052 0.98068 1.12278 1.26372 1.48029 1.03405 1.11058 1.57141 0.69567 0.87111 0.86867 0.88270 0.91411 0.91270 0.92375 0.84029 0.91272 0.95547 0.94031 0.92401 0.93383 0.99114 0.99048 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.51 71.23 0.75 0.32 16 2 C 0.29 5.02 8.24 138.22 1.14 6.15 16 3 N -0.57 -14.90 11.19 -179.73 -2.01 -16.91 16 4 C 0.22 6.16 6.64 138.63 0.92 7.08 16 5 C 0.18 5.13 3.16 44.17 0.14 5.26 16 6 H 0.07 1.97 7.80 -2.39 -0.02 1.95 16 7 C -0.13 -3.32 9.40 71.98 0.68 -2.65 16 8 N -0.67 -21.75 6.29 -495.45 -3.11 -24.87 16 9 C 0.08 2.78 4.94 86.31 0.43 3.21 16 10 C -0.07 -3.17 2.55 -10.79 -0.03 -3.20 16 11 H 0.06 2.57 8.14 -2.39 -0.02 2.56 16 12 C -0.13 -4.87 8.78 71.98 0.63 -4.24 16 13 C 0.03 1.83 4.45 29.85 0.13 1.96 16 14 C -0.53 -30.43 8.41 25.60 0.22 -30.22 16 15 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 16 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 17 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 18 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 N -0.32 -8.67 12.78 -51.33 -0.66 -9.33 16 23 N -0.48 -8.45 7.45 -50.71 -0.38 -8.83 16 24 H 0.46 4.29 8.96 -213.10 -1.91 2.38 16 25 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.81 7.45 -2.39 -0.02 1.79 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.34 11.03 6.60 -89.70 -0.59 10.44 16 32 H 0.07 2.54 7.44 -2.38 -0.02 2.52 16 33 H 0.03 0.96 8.05 -2.39 -0.02 0.94 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.92 6.68 -2.39 -0.02 1.90 16 36 H 0.05 1.99 6.95 -2.39 -0.02 1.97 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -73.10 322.94 0.16 -72.93 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -1.45 Total: 13.26 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 5.46 Total: -15.99 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -5.87 Total: -117.50 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.10 0.16 -72.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894774854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.973 kcal (2) G-P(sol) polarization free energy of solvation -73.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds