Wall clock time and date at job start Sun Mar 29 2020 23:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00222 * 2 1 4 4 C 1.50699 * 109.46945 * 66.04905 * 3 2 1 5 5 O 1.21294 * 119.99986 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00013 * 180.02562 * 4 3 2 7 7 C 1.37099 * 119.99999 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00468 * 222.86564 * 7 6 4 9 9 C 1.38956 * 120.00018 * 42.87515 * 7 6 4 10 10 N 1.31413 * 119.99508 * 19.26553 * 9 7 6 11 11 Si 1.86797 * 120.00059 * 199.26322 * 9 7 6 12 12 H 1.48497 * 109.46955 * 59.99927 * 11 9 7 13 13 H 1.48505 * 109.46835 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47421 * 299.99841 * 11 9 7 15 15 C 1.46500 * 120.00007 * 359.97438 * 6 4 3 16 16 C 1.53003 * 117.49805 * 191.86747 * 15 6 4 17 17 C 1.53000 * 60.00009 * 252.51396 * 16 15 6 18 18 C 1.46903 * 110.99896 * 236.04547 * 2 1 3 19 19 C 1.53773 * 113.61685 * 286.37394 * 18 2 1 20 20 C 1.53960 * 87.02092 * 220.04731 * 19 18 2 21 21 C 1.53784 * 113.61316 * 188.76201 * 18 2 1 22 22 H 1.08994 * 109.47253 * 178.37348 * 1 2 3 23 23 H 1.08998 * 109.47261 * 58.37610 * 1 2 3 24 24 H 1.08997 * 109.47181 * 298.37658 * 1 2 3 25 25 H 1.09003 * 109.47375 * 186.04304 * 3 2 1 26 26 H 1.09002 * 109.47514 * 306.04524 * 3 2 1 27 27 H 0.97001 * 119.99425 * 184.96108 * 10 9 7 28 28 H 1.08999 * 115.55346 * 337.58065 * 15 6 4 29 29 H 1.08999 * 117.50172 * 0.02562 * 16 15 6 30 30 H 1.09004 * 117.49773 * 145.02514 * 16 15 6 31 31 H 1.09002 * 117.49980 * 252.50648 * 17 16 15 32 32 H 1.09005 * 117.51602 * 107.48644 * 17 16 15 33 33 H 1.09000 * 112.84788 * 57.57000 * 18 2 1 34 34 H 1.09004 * 113.61626 * 334.56622 * 19 18 2 35 35 H 1.09001 * 113.61428 * 105.47019 * 19 18 2 36 36 H 1.09003 * 113.53705 * 270.81197 * 20 19 18 37 37 H 1.09004 * 113.66688 * 139.93051 * 20 19 18 38 38 H 1.09000 * 113.61454 * 254.52691 * 21 18 2 39 39 H 1.08992 * 113.61531 * 25.35640 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0047 1.4454 2.1408 6 7 2.0181 3.3201 1.5234 7 6 1.6915 3.9349 2.7045 8 1 1.3382 4.9554 2.7024 9 6 1.8154 3.2451 3.9043 10 7 2.5781 2.1771 3.9724 11 14 0.8979 3.8358 5.4204 12 1 -0.5623 3.8264 5.1502 13 1 1.1955 2.9337 6.5618 14 1 1.3306 5.2166 5.7542 15 6 2.7813 4.0468 0.5058 16 6 3.4217 5.3742 0.9170 17 6 2.2001 5.3671 -0.0042 18 6 1.9954 -0.7660 -1.1376 19 6 1.8453 -2.2880 -0.9777 20 6 3.2498 -2.4107 -1.5964 21 6 3.5163 -0.9865 -1.0808 22 1 -0.3633 -1.0272 -0.0292 23 1 -0.3634 0.5388 -0.8750 24 1 -0.3633 0.4884 0.9042 25 1 3.0798 1.3444 -0.1082 26 1 1.5612 1.9274 -0.8309 27 1 2.6086 1.6542 4.7888 28 1 3.3228 3.4263 -0.2082 29 1 3.2755 5.7065 1.9448 30 1 4.3848 5.6270 0.4737 31 1 2.3595 5.6153 -1.0535 32 1 1.2497 5.6948 0.4172 33 1 1.6441 -0.3913 -2.0990 34 1 1.7957 -2.6152 0.0609 35 1 1.0561 -2.7163 -1.5956 36 1 3.2413 -2.4869 -2.6837 37 1 3.8719 -3.1701 -1.1226 38 1 4.0740 -0.3656 -1.7819 39 1 3.9245 -0.9558 -0.0707 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900360582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:43 Heat of formation + Delta-G solvation = 38.818446 kcal Electronic energy + Delta-G solvation = -19533.889193 eV Core-core repulsion = 16672.125088 eV Total energy + Delta-G solvation = -2861.764104 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.24974 -38.21994 -36.13669 -34.29917 -32.56706 -30.89742 -27.92928 -25.94157 -25.13322 -24.38782 -22.03368 -21.62661 -21.06113 -19.24700 -18.91421 -16.52455 -15.97655 -15.74444 -15.09497 -14.67574 -14.46974 -14.22691 -13.63799 -13.47791 -13.03924 -12.76699 -12.28118 -12.17809 -11.80215 -11.49538 -11.34699 -11.25460 -10.94569 -10.81324 -10.74665 -10.62221 -10.34867 -10.27671 -10.11074 -9.98421 -9.95020 -9.71250 -8.62199 -8.04805 -7.58862 -6.92988 -6.00683 -3.79787 3.35948 3.43231 3.46141 4.15722 4.24977 4.45657 4.76257 4.83521 4.88169 4.97719 5.04859 5.14177 5.35789 5.55988 5.62546 5.72376 5.78674 5.82672 5.86881 5.95670 5.99163 6.02859 6.09787 6.11237 6.16152 6.22674 6.25372 6.43553 6.48906 6.58187 6.75059 6.78156 6.98599 7.50693 7.67721 7.69894 8.35215 9.14168 9.26820 9.74404 10.39466 11.05268 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.007156 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.829542 B = 3911.714120 C = 4623.168932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.506 5.506 3 C 0.045 3.955 4 C 0.487 3.513 5 O -0.514 6.514 6 N -0.431 5.431 7 C -0.347 4.347 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.826 5.826 11 Si 0.906 3.094 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.279 1.279 15 C 0.075 3.925 16 C -0.177 4.177 17 C -0.208 4.208 18 C 0.051 3.949 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.130 4.130 22 H 0.056 0.944 23 H 0.010 0.990 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.264 0.736 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 -3.100 -11.274 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.230 5.230 3 C -0.087 4.087 4 C 0.274 3.726 5 O -0.390 6.390 6 N -0.153 5.153 7 C -0.474 4.474 8 H 0.093 0.907 9 C -0.137 4.137 10 N -0.459 5.459 11 Si 0.733 3.267 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.205 1.205 15 C -0.031 4.031 16 C -0.215 4.215 17 C -0.247 4.247 18 C -0.058 4.058 19 C -0.163 4.163 20 C -0.180 4.180 21 C -0.168 4.168 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.277 -3.796 -10.230 10.986 hybrid contribution -0.560 0.751 -0.127 0.945 sum 0.717 -3.045 -10.357 10.819 Atomic orbital electron populations 1.22464 0.87183 1.00935 1.01713 1.61868 1.08198 1.12891 1.40043 1.21971 1.00422 0.88846 0.97434 1.19625 0.82824 0.82670 0.87505 1.90476 1.40218 1.62518 1.45764 1.42806 1.47488 1.11065 1.13982 1.18764 1.46445 0.99828 0.82333 0.90731 1.25150 0.94204 0.96249 0.98090 1.69886 1.31804 1.16093 1.28150 0.86392 0.80714 0.77899 0.81703 1.20157 1.21275 1.20488 1.21704 0.98369 0.87703 0.95360 1.23072 0.95381 1.01960 1.01063 1.23276 0.98594 1.04682 0.98133 1.23183 0.95950 0.94333 0.92292 1.22954 0.96441 0.95081 1.01805 1.22744 0.97660 0.97632 0.99931 1.22975 0.95439 0.96191 1.02201 0.92505 0.97192 0.88727 0.89871 0.94228 0.92594 0.88053 0.87497 0.89970 0.89985 0.89073 0.92653 0.89098 0.92203 0.90695 0.91347 0.92034 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.15 60.06 0.55 1.01 16 2 N -0.51 -9.63 4.44 -235.36 -1.05 -10.68 16 3 C 0.04 0.90 3.87 -4.98 -0.02 0.88 16 4 C 0.49 12.42 6.71 -10.99 -0.07 12.34 16 5 O -0.51 -15.01 11.97 5.54 0.07 -14.95 16 6 N -0.43 -10.89 2.86 -107.73 -0.31 -11.20 16 7 C -0.35 -9.54 7.70 -14.93 -0.12 -9.66 16 8 H 0.08 1.99 7.57 -52.49 -0.40 1.60 16 9 C 0.07 2.10 4.35 -17.47 -0.08 2.03 16 10 N -0.83 -24.83 11.69 55.50 0.65 -24.18 16 11 Si 0.91 22.20 29.60 -169.99 -5.03 17.17 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.08 1.52 6.06 -67.93 -0.41 1.11 16 16 C -0.18 -3.26 9.83 -26.73 -0.26 -3.52 16 17 C -0.21 -3.62 10.19 -26.73 -0.27 -3.90 16 18 C 0.05 0.77 3.17 -66.90 -0.21 0.56 16 19 C -0.12 -1.65 7.28 -25.83 -0.19 -1.83 16 20 C -0.14 -1.63 8.09 -25.82 -0.21 -1.84 16 21 C -0.13 -1.79 6.76 -25.91 -0.18 -1.96 16 22 H 0.06 0.92 7.64 -51.93 -0.40 0.53 16 23 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 24 H 0.09 2.07 5.91 -51.93 -0.31 1.77 16 25 H 0.08 1.60 6.63 -51.93 -0.34 1.25 16 26 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.26 7.71 8.32 -40.82 -0.34 7.37 16 28 H 0.10 1.82 6.71 -51.93 -0.35 1.47 16 29 H 0.11 2.20 6.97 -51.93 -0.36 1.84 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 312.39 15.07 4.71 4.71 Total: -1.00 -31.97 312.39 -8.79 -40.76 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.36 Total: 3.15 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.47 Total: -4.78 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.71 Total: -46.06 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.07 Total: -14.95 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.97 -8.79 -40.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.580 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds