Wall clock time and date at job start Sun Mar 29 2020 23:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46984 * 2 1 4 4 N 1.46903 * 109.46684 * 120.00041 * 2 1 3 5 5 C 1.46905 * 110.99670 * 274.99739 * 4 2 1 6 6 C 1.52996 * 109.46881 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47157 * 299.99844 * 6 5 4 8 8 C 1.53001 * 109.47444 * 59.99802 * 6 5 4 9 9 C 1.50698 * 109.47097 * 179.97438 * 6 5 4 10 10 H 1.08006 * 119.99857 * 0.02562 * 9 6 5 11 11 C 1.37877 * 120.00177 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00029 * 0.02562 * 11 9 6 13 13 Si 1.86802 * 120.00040 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47307 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47053 * 120.00039 * 13 11 9 16 16 H 1.48506 * 109.47030 * 239.99681 * 13 11 9 17 17 C 1.50699 * 109.46885 * 239.99471 * 2 1 3 18 18 C 1.35355 * 126.74766 * 85.00715 * 17 2 1 19 19 N 1.35316 * 106.17300 * 180.02562 * 18 17 2 20 20 C 1.46501 * 125.86780 * 179.97438 * 19 18 17 21 21 N 1.28712 * 108.26421 * 359.97438 * 19 18 17 22 22 N 1.28635 * 110.17901 * 0.02562 * 21 19 18 23 23 H 1.09001 * 109.46648 * 60.00068 * 1 2 3 24 24 H 1.08995 * 109.46984 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46939 * 300.00422 * 1 2 3 26 26 H 1.00890 * 111.00436 * 38.95358 * 4 2 1 27 27 H 1.09002 * 109.46978 * 300.00092 * 5 4 2 28 28 H 1.08999 * 109.47084 * 60.00012 * 5 4 2 29 29 H 1.08997 * 109.47293 * 60.00387 * 7 6 5 30 30 H 1.09002 * 109.47613 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47141 * 300.00054 * 7 6 5 32 32 H 1.09006 * 109.46750 * 60.00096 * 8 6 5 33 33 H 1.09003 * 109.47228 * 179.97438 * 8 6 5 34 34 H 1.09002 * 109.47225 * 300.00240 * 8 6 5 35 35 H 0.97003 * 120.00599 * 180.02562 * 12 11 9 36 36 H 1.07996 * 126.91346 * 359.74595 * 18 17 2 37 37 H 1.08997 * 109.47028 * 89.99809 * 20 19 18 38 38 H 1.09000 * 109.46921 * 209.99714 * 20 19 18 39 39 H 1.09000 * 109.46674 * 329.99600 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 1.6470 -1.6891 3.8954 8 6 3.9933 -1.0851 3.2853 9 6 2.6611 0.4061 4.7511 10 1 2.3652 1.4384 4.6354 11 6 3.0973 -0.0528 5.9759 12 7 3.4571 -1.3098 6.1170 13 14 3.1772 1.1109 7.4350 14 1 2.7209 2.4608 7.0171 15 1 2.2980 0.6056 8.5199 16 1 4.5757 1.1911 7.9282 17 6 2.0323 -0.7105 -1.2304 18 6 2.2132 -0.1724 -2.4591 19 7 2.6739 -1.1732 -3.2448 20 6 3.0137 -1.0621 -4.6655 21 7 2.7624 -2.2395 -2.5294 22 7 2.3869 -1.9970 -1.3232 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.4496 -1.4979 1.4101 27 1 2.7589 1.0462 2.1182 28 1 1.0870 0.6164 2.5525 29 1 1.6004 -2.3681 3.0441 30 1 2.0132 -2.2276 4.7695 31 1 0.6516 -1.2956 4.1013 32 1 4.6695 -0.2613 3.0565 33 1 4.3594 -1.6230 4.1599 34 1 3.9468 -1.7642 2.4339 35 1 3.7637 -1.6329 6.9787 36 1 2.0233 0.8489 -2.7544 37 1 4.0633 -0.7866 -4.7676 38 1 2.8400 -2.0196 -5.1565 39 1 2.3905 -0.2975 -5.1293 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903017914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:11 Heat of formation + Delta-G solvation = 96.483296 kcal Electronic energy + Delta-G solvation = -18861.915037 eV Core-core repulsion = 16034.944219 eV Total energy + Delta-G solvation = -2826.970818 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.08177 -37.36658 -35.17693 -34.08150 -31.74243 -30.30906 -28.37771 -27.93385 -25.44175 -25.13810 -24.35912 -22.94597 -21.85891 -20.28244 -18.38718 -17.22038 -16.51973 -15.83593 -15.17978 -14.77645 -14.43454 -14.11851 -13.86758 -13.50819 -13.32232 -12.71307 -12.55544 -12.37463 -11.95177 -11.71808 -11.62774 -11.09200 -11.00932 -10.90507 -10.59316 -10.49953 -10.49354 -10.08587 -9.97431 -9.91365 -9.28284 -9.08496 -8.92009 -8.51139 -8.21225 -7.55134 -5.83136 -3.93609 1.67772 2.39018 2.78592 3.35000 3.43207 3.46326 4.27815 4.48863 4.57726 4.72370 4.79378 4.97320 4.99586 5.33871 5.41833 5.42086 5.48801 5.74227 5.86727 6.07707 6.20634 6.37632 6.42868 6.54150 6.62918 6.83758 7.00676 7.20991 7.28801 7.53782 7.60429 7.84027 7.86303 7.94066 8.12319 8.32490 8.45894 8.64922 8.72467 9.08397 9.70978 11.17195 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043879 B = 0.004403 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.972381 B = 6358.132770 C = 6520.443471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.165 3.835 3 H 0.089 0.911 4 N -0.671 5.671 5 C 0.076 3.924 6 C 0.069 3.931 7 C -0.132 4.132 8 C -0.119 4.119 9 C -0.505 4.505 10 H 0.052 0.948 11 C 0.065 3.935 12 N -0.883 5.883 13 Si 0.887 3.113 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.286 1.286 17 C 0.010 3.990 18 C -0.062 4.062 19 N -0.301 5.301 20 C 0.085 3.915 21 N -0.098 5.098 22 N -0.239 5.239 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.345 0.655 27 H 0.055 0.945 28 H 0.014 0.986 29 H 0.013 0.987 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.015 0.985 33 H 0.072 0.928 34 H 0.023 0.977 35 H 0.257 0.743 36 H 0.186 0.814 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 3.498 -19.361 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.051 3.949 3 H 0.107 0.893 4 N -0.303 5.303 5 C -0.052 4.052 6 C 0.068 3.932 7 C -0.190 4.190 8 C -0.176 4.176 9 C -0.544 4.544 10 H 0.070 0.930 11 C -0.136 4.136 12 N -0.522 5.522 13 Si 0.715 3.285 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.129 4.129 18 C -0.213 4.213 19 N -0.095 5.095 20 C -0.057 4.057 21 N -0.077 5.077 22 N -0.105 5.105 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.166 0.834 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.203 0.797 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.774 1.947 -19.394 19.688 hybrid contribution -1.082 2.004 0.759 2.401 sum -3.855 3.951 -18.636 19.436 Atomic orbital electron populations 1.22485 0.96557 1.02395 1.02034 1.19732 0.91891 0.96133 0.87096 0.89307 1.60475 1.56738 1.09880 1.03198 1.22196 0.97754 0.94778 0.90506 1.18086 0.92633 0.92656 0.89807 1.21823 0.97646 0.98813 1.00704 1.21630 0.97598 0.98625 0.99793 1.21154 1.43294 0.95848 0.94068 0.93003 1.24889 0.95345 0.94951 0.98438 1.69857 1.44693 1.13942 1.23732 0.86626 0.77510 0.81288 0.83039 1.19997 1.21238 1.21186 1.22087 1.03841 0.91745 0.95243 1.23237 1.09188 0.96765 0.92132 1.47194 1.43273 1.07718 1.11347 1.22163 1.02942 1.05304 0.75293 1.78347 1.20460 1.10127 0.98790 1.75130 1.12543 1.14911 1.07941 0.92689 0.92322 0.91624 0.83414 0.92678 0.96752 0.96802 0.89931 0.96308 0.96539 0.90885 0.95806 0.93317 0.79723 0.89394 0.88347 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 9.14 37.16 0.34 -1.95 16 2 C 0.16 2.50 3.07 -68.86 -0.21 2.29 16 3 H 0.09 1.26 7.80 -51.93 -0.40 0.85 16 4 N -0.67 -12.72 5.32 -107.95 -0.57 -13.29 16 5 C 0.08 1.60 4.38 -3.82 -0.02 1.58 16 6 C 0.07 1.71 0.57 -155.67 -0.09 1.62 16 7 C -0.13 -3.23 7.92 37.15 0.29 -2.94 16 8 C -0.12 -3.04 8.09 37.16 0.30 -2.74 16 9 C -0.50 -13.80 8.01 -34.44 -0.28 -14.07 16 10 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 11 C 0.06 1.78 5.15 -17.82 -0.09 1.69 16 12 N -0.88 -25.04 9.35 55.43 0.52 -24.52 16 13 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 C 0.01 0.15 6.18 -82.78 -0.51 -0.36 16 18 C -0.06 -0.72 11.55 -17.04 -0.20 -0.92 16 19 N -0.30 -3.48 3.74 -68.06 -0.25 -3.74 16 20 C 0.08 0.47 11.39 59.85 0.68 1.15 16 21 N -0.10 -1.56 13.16 60.35 0.79 -0.76 16 22 N -0.24 -4.31 12.24 33.29 0.41 -3.90 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 25 H 0.06 0.88 7.45 -51.93 -0.39 0.49 16 26 H 0.35 6.76 6.51 -39.30 -0.26 6.50 16 27 H 0.05 1.18 8.06 -51.93 -0.42 0.76 16 28 H 0.01 0.30 7.44 -51.93 -0.39 -0.09 16 29 H 0.01 0.30 6.57 -51.93 -0.34 -0.04 16 30 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 2.04 6.07 -51.93 -0.32 1.72 16 34 H 0.02 0.58 7.60 -51.93 -0.39 0.18 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -32.35 314.80 -5.30 -37.65 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.14 Total: 2.10 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 0.22 Total: -14.65 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.89 Total: -46.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.35 -5.30 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903017914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.137 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds