Wall clock time and date at job start Sun Mar 29 2020 23:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46984 * 2 1 4 4 N 1.46903 * 109.46684 * 120.00041 * 2 1 3 5 5 C 1.46905 * 110.99670 * 274.99739 * 4 2 1 6 6 C 1.52996 * 109.46881 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47157 * 299.99844 * 6 5 4 8 8 C 1.53001 * 109.47444 * 59.99802 * 6 5 4 9 9 C 1.50698 * 109.47097 * 179.97438 * 6 5 4 10 10 H 1.08006 * 119.99857 * 0.02562 * 9 6 5 11 11 C 1.37877 * 120.00177 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00029 * 0.02562 * 11 9 6 13 13 Si 1.86802 * 120.00040 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47307 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47053 * 120.00039 * 13 11 9 16 16 H 1.48506 * 109.47030 * 239.99681 * 13 11 9 17 17 C 1.50699 * 109.46885 * 239.99471 * 2 1 3 18 18 C 1.35355 * 126.74766 * 85.00715 * 17 2 1 19 19 N 1.35316 * 106.17300 * 180.02562 * 18 17 2 20 20 C 1.46501 * 125.86780 * 179.97438 * 19 18 17 21 21 N 1.28712 * 108.26421 * 359.97438 * 19 18 17 22 22 N 1.28635 * 110.17901 * 0.02562 * 21 19 18 23 23 H 1.09001 * 109.46648 * 60.00068 * 1 2 3 24 24 H 1.08995 * 109.46984 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46939 * 300.00422 * 1 2 3 26 26 H 1.00890 * 111.00436 * 38.95358 * 4 2 1 27 27 H 1.09002 * 109.46978 * 300.00092 * 5 4 2 28 28 H 1.08999 * 109.47084 * 60.00012 * 5 4 2 29 29 H 1.08997 * 109.47293 * 60.00387 * 7 6 5 30 30 H 1.09002 * 109.47613 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47141 * 300.00054 * 7 6 5 32 32 H 1.09006 * 109.46750 * 60.00096 * 8 6 5 33 33 H 1.09003 * 109.47228 * 179.97438 * 8 6 5 34 34 H 1.09002 * 109.47225 * 300.00240 * 8 6 5 35 35 H 0.97003 * 120.00599 * 180.02562 * 12 11 9 36 36 H 1.07996 * 126.91346 * 359.74595 * 18 17 2 37 37 H 1.08997 * 109.47028 * 89.99809 * 20 19 18 38 38 H 1.09000 * 109.46921 * 209.99714 * 20 19 18 39 39 H 1.09000 * 109.46674 * 329.99600 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 1.6470 -1.6891 3.8954 8 6 3.9933 -1.0851 3.2853 9 6 2.6611 0.4061 4.7511 10 1 2.3652 1.4384 4.6354 11 6 3.0973 -0.0528 5.9759 12 7 3.4571 -1.3098 6.1170 13 14 3.1772 1.1109 7.4350 14 1 2.7209 2.4608 7.0171 15 1 2.2980 0.6056 8.5199 16 1 4.5757 1.1911 7.9282 17 6 2.0323 -0.7105 -1.2304 18 6 2.2132 -0.1724 -2.4591 19 7 2.6739 -1.1732 -3.2448 20 6 3.0137 -1.0621 -4.6655 21 7 2.7624 -2.2395 -2.5294 22 7 2.3869 -1.9970 -1.3232 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.4496 -1.4979 1.4101 27 1 2.7589 1.0462 2.1182 28 1 1.0870 0.6164 2.5525 29 1 1.6004 -2.3681 3.0441 30 1 2.0132 -2.2276 4.7695 31 1 0.6516 -1.2956 4.1013 32 1 4.6695 -0.2613 3.0565 33 1 4.3594 -1.6230 4.1599 34 1 3.9468 -1.7642 2.4339 35 1 3.7637 -1.6329 6.9787 36 1 2.0233 0.8489 -2.7544 37 1 4.0633 -0.7866 -4.7676 38 1 2.8400 -2.0196 -5.1565 39 1 2.3905 -0.2975 -5.1293 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903017914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:11 Heat of formation + Delta-G solvation = 74.111865 kcal Electronic energy + Delta-G solvation = -18862.885135 eV Core-core repulsion = 16034.944219 eV Total energy + Delta-G solvation = -2827.940916 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.06636 -38.93806 -36.67607 -35.14035 -33.49437 -31.67914 -29.66305 -28.62506 -27.47700 -27.22114 -25.83514 -24.27505 -22.80539 -21.37075 -20.29990 -18.22863 -17.70067 -17.39824 -16.82315 -16.08465 -15.92370 -15.40195 -15.19764 -14.43008 -14.34942 -14.21230 -13.85694 -13.73779 -13.43356 -13.09409 -13.00996 -12.89072 -12.64803 -12.45989 -12.41640 -12.11014 -12.04080 -11.99762 -11.61572 -11.28494 -10.92545 -10.83605 -10.55290 -10.31849 -10.01787 -9.01557 -7.92407 -6.09856 0.76600 1.43893 1.46600 1.56457 1.67140 1.72001 2.49535 3.29543 3.41299 3.51046 4.01810 4.08113 4.26710 4.34169 4.38521 4.48588 4.62126 4.67078 4.69371 4.79824 4.91172 4.92656 5.02287 5.14153 5.19348 5.23043 5.33443 5.37212 5.48121 5.58080 5.73683 5.79803 5.82680 6.21197 6.34015 6.40680 6.54101 6.70048 7.00971 7.57800 7.69297 9.06109 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043879 B = 0.004403 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.972381 B = 6358.132770 C = 6520.443471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.165 3.835 3 H 0.102 0.898 4 N -0.682 5.682 5 C 0.093 3.907 6 C 0.059 3.941 7 C -0.119 4.119 8 C -0.103 4.103 9 C -0.521 4.521 10 H 0.050 0.950 11 C 0.018 3.982 12 N -0.906 5.906 13 Si 0.947 3.053 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.021 4.021 18 C -0.038 4.038 19 N -0.290 5.290 20 C 0.071 3.929 21 N -0.135 5.135 22 N -0.292 5.292 23 H 0.084 0.916 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.339 0.661 27 H 0.052 0.948 28 H 0.019 0.981 29 H 0.026 0.974 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.009 0.991 33 H 0.046 0.954 34 H 0.025 0.975 35 H 0.256 0.744 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 5.540 -21.344 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.053 3.947 3 H 0.120 0.880 4 N -0.314 5.314 5 C -0.036 4.036 6 C 0.058 3.942 7 C -0.177 4.177 8 C -0.160 4.160 9 C -0.560 4.560 10 H 0.068 0.932 11 C -0.180 4.180 12 N -0.546 5.546 13 Si 0.774 3.226 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.212 1.212 17 C -0.161 4.161 18 C -0.190 4.190 19 N -0.085 5.085 20 C -0.068 4.068 21 N -0.114 5.114 22 N -0.158 5.158 23 H 0.103 0.897 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.158 0.842 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.250 0.750 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.399 3.973 -21.419 22.048 hybrid contribution -0.858 1.387 1.236 2.046 sum -4.257 5.360 -20.184 21.313 Atomic orbital electron populations 1.22373 0.94980 1.01884 1.03231 1.19822 0.93173 0.96257 0.85445 0.88027 1.60376 1.57683 1.09655 1.03647 1.21839 0.97553 0.94322 0.89883 1.18149 0.92194 0.92758 0.91088 1.21639 0.97435 0.98728 0.99883 1.21444 0.98147 0.97990 0.98470 1.21475 1.43254 0.96151 0.95145 0.93181 1.25595 0.95198 0.96296 1.00923 1.70006 1.45139 1.15314 1.24122 0.85678 0.77290 0.79704 0.79929 1.19227 1.21027 1.21166 1.22241 1.05680 0.91502 0.96694 1.23860 1.06308 0.98211 0.90611 1.47664 1.41130 1.06677 1.12980 1.22693 1.04762 1.07109 0.72213 1.78237 1.22242 1.12050 0.98831 1.75048 1.14405 1.16866 1.09458 0.89713 0.93670 0.92081 0.84190 0.92966 0.96317 0.95506 0.92812 0.96087 0.97163 0.93538 0.95601 0.93483 0.74962 0.87877 0.87781 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 9.14 71.98 0.66 -3.34 16 2 C 0.17 4.75 3.07 44.17 0.14 4.88 16 3 H 0.10 2.61 7.80 -2.39 -0.02 2.59 16 4 N -0.68 -25.60 5.32 -495.44 -2.64 -28.24 16 5 C 0.09 3.87 4.38 86.30 0.38 4.24 16 6 C 0.06 2.94 0.57 -52.93 -0.03 2.91 16 7 C -0.12 -5.90 7.92 71.98 0.57 -5.33 16 8 C -0.10 -5.36 8.09 71.98 0.58 -4.78 16 9 C -0.52 -28.55 8.01 25.60 0.21 -28.34 16 10 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 11 C 0.02 1.02 5.15 84.66 0.44 1.46 16 12 N -0.91 -52.28 9.35 21.45 0.20 -52.08 16 13 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 C -0.02 -0.60 6.18 41.60 0.26 -0.34 16 18 C -0.04 -0.74 11.55 83.49 0.96 0.22 16 19 N -0.29 -5.97 3.74 -369.23 -1.38 -7.35 16 20 C 0.07 0.53 11.39 127.77 1.46 1.99 16 21 N -0.13 -4.20 13.16 37.02 0.49 -3.72 16 22 N -0.29 -10.54 12.24 -48.60 -0.59 -11.14 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.04 1.21 8.13 -2.39 -0.02 1.19 16 25 H 0.06 1.52 7.45 -2.39 -0.02 1.50 16 26 H 0.34 13.34 6.51 -89.70 -0.58 12.75 16 27 H 0.05 2.19 8.06 -2.39 -0.02 2.17 16 28 H 0.02 0.76 7.44 -2.39 -0.02 0.74 16 29 H 0.03 1.21 6.57 -2.39 -0.02 1.20 16 30 H 0.05 2.98 6.07 -2.39 -0.01 2.96 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.05 2.66 6.07 -2.39 -0.01 2.64 16 34 H 0.02 1.29 7.60 -2.39 -0.02 1.27 16 35 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.23 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 Total: -1.00 -72.00 314.80 4.16 -67.84 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.45 Total: 15.14 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 5.61 Total: -26.44 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -3.92 Total: -102.52 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -72.00 4.16 -67.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903017914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.950 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds