Wall clock time and date at job start Sun Mar 29 2020 23:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47047 * 2 1 4 4 N 1.46902 * 109.46555 * 240.00539 * 2 1 3 5 5 C 1.46898 * 111.00157 * 85.00220 * 4 2 1 6 6 C 1.52997 * 109.47123 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47164 * 299.99884 * 6 5 4 8 8 C 1.52999 * 109.47592 * 59.99590 * 6 5 4 9 9 C 1.50698 * 109.47342 * 179.97438 * 6 5 4 10 10 H 1.08003 * 120.00057 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00356 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99989 * 0.02562 * 11 9 6 13 13 Si 1.86798 * 120.00260 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.46926 * 60.00146 * 13 11 9 15 15 H 1.48500 * 109.47454 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 300.00528 * 13 11 9 17 17 C 1.50696 * 109.47394 * 120.00665 * 2 1 3 18 18 C 1.35350 * 126.74847 * 274.71218 * 17 2 1 19 19 N 1.35321 * 106.17353 * 179.84983 * 18 17 2 20 20 C 1.46502 * 125.86712 * 180.11437 * 19 18 17 21 21 N 1.28715 * 108.26123 * 0.41758 * 19 18 17 22 22 N 1.28633 * 110.18009 * 359.73018 * 21 19 18 23 23 H 1.08994 * 109.47047 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46780 * 299.99630 * 1 2 3 25 25 H 1.08998 * 109.46853 * 59.99382 * 1 2 3 26 26 H 1.00898 * 111.00159 * 321.04548 * 4 2 1 27 27 H 1.09001 * 109.47062 * 59.99599 * 5 4 2 28 28 H 1.09002 * 109.46774 * 299.99237 * 5 4 2 29 29 H 1.09001 * 109.46801 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.46998 * 299.99705 * 7 6 5 31 31 H 1.09000 * 109.47050 * 59.99996 * 7 6 5 32 32 H 1.09000 * 109.47160 * 300.00333 * 8 6 5 33 33 H 1.09002 * 109.46719 * 60.00054 * 8 6 5 34 34 H 1.08993 * 109.47839 * 179.97438 * 8 6 5 35 35 H 0.96996 * 119.99885 * 179.97438 * 12 11 9 36 36 H 1.07999 * 126.91405 * 359.97438 * 18 17 2 37 37 H 1.09001 * 109.46828 * 270.32285 * 20 19 18 38 38 H 1.08999 * 109.46970 * 30.32928 * 20 19 18 39 39 H 1.08997 * 109.46822 * 150.32721 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2227 -2.3469 6 6 2.5960 -0.5326 -3.5743 7 6 3.9934 -1.0849 -3.2854 8 6 1.6471 -1.6890 -3.8956 9 6 2.6599 0.4060 -4.7515 10 1 2.3641 1.4383 -4.6358 11 6 3.0969 -0.0527 -5.9761 12 7 3.4575 -1.3096 -6.1170 13 14 3.1767 1.1110 -7.4351 14 1 4.0975 2.2335 -7.1232 15 1 3.6751 0.3778 -8.6265 16 1 1.8204 1.6468 -7.7158 17 6 2.0325 -0.7105 1.2303 18 6 2.2184 -0.1712 2.4577 19 7 2.6744 -1.1733 3.2446 20 6 3.0152 -1.0619 4.6650 21 7 2.7633 -2.2394 2.5290 22 7 2.3877 -1.9969 1.3228 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.4495 -1.4978 -1.4102 27 1 2.7588 1.0463 -2.1182 28 1 1.0870 0.6164 -2.5525 29 1 4.3594 -1.6227 -4.1600 30 1 4.6695 -0.2611 -3.0566 31 1 3.9468 -1.7640 -2.4340 32 1 1.6005 -2.3681 -3.0442 33 1 0.6516 -1.2956 -4.1014 34 1 2.0127 -2.2269 -4.7702 35 1 3.7646 -1.6324 -6.9786 36 1 2.0372 0.8524 2.7507 37 1 4.0649 -0.7859 4.7662 38 1 2.3921 -0.2976 5.1294 39 1 2.8424 -2.0194 5.1562 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903017936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:15 Heat of formation + Delta-G solvation = 96.559139 kcal Electronic energy + Delta-G solvation = -18861.860705 eV Core-core repulsion = 16034.893176 eV Total energy + Delta-G solvation = -2826.967529 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.08060 -37.36551 -35.17501 -34.08041 -31.74033 -30.30807 -28.37768 -27.93312 -25.43902 -25.13594 -24.35746 -22.94493 -21.85890 -20.28103 -18.38474 -17.21867 -16.51993 -15.83161 -15.17639 -14.77616 -14.43770 -14.11750 -13.86966 -13.50775 -13.32213 -12.70875 -12.55420 -12.37139 -11.94991 -11.71720 -11.62555 -11.07631 -11.00115 -10.89242 -10.59972 -10.54584 -10.48997 -10.08164 -9.97154 -9.91276 -9.27916 -9.08489 -8.91695 -8.52428 -8.20389 -7.55062 -5.82675 -3.93325 1.67770 2.39085 2.78595 3.37410 3.42344 3.44474 4.27882 4.48999 4.57788 4.72390 4.79448 4.97417 4.99632 5.33744 5.41944 5.42238 5.48967 5.74306 5.86802 6.07750 6.20721 6.37667 6.42925 6.54207 6.62959 6.83873 7.00850 7.21161 7.28966 7.53808 7.60573 7.83923 7.86440 7.94168 8.12369 8.32682 8.46008 8.65040 8.72490 9.08281 9.71111 11.17603 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043867 B = 0.004403 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.133515 B = 6357.633313 C = 6519.799151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.165 3.835 3 H 0.089 0.911 4 N -0.671 5.671 5 C 0.076 3.924 6 C 0.070 3.930 7 C -0.119 4.119 8 C -0.132 4.132 9 C -0.506 4.506 10 H 0.051 0.949 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.289 1.289 16 H -0.279 1.279 17 C 0.010 3.990 18 C -0.062 4.062 19 N -0.301 5.301 20 C 0.085 3.915 21 N -0.098 5.098 22 N -0.239 5.239 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.345 0.655 27 H 0.055 0.945 28 H 0.014 0.986 29 H 0.072 0.928 30 H 0.015 0.985 31 H 0.023 0.977 32 H 0.013 0.987 33 H 0.018 0.982 34 H 0.082 0.918 35 H 0.258 0.742 36 H 0.186 0.814 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 3.477 19.330 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.051 3.949 3 H 0.107 0.893 4 N -0.303 5.303 5 C -0.052 4.052 6 C 0.069 3.931 7 C -0.177 4.177 8 C -0.190 4.190 9 C -0.545 4.545 10 H 0.069 0.931 11 C -0.136 4.136 12 N -0.522 5.522 13 Si 0.716 3.284 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.205 1.205 17 C -0.129 4.129 18 C -0.213 4.213 19 N -0.095 5.095 20 C -0.057 4.057 21 N -0.077 5.077 22 N -0.105 5.105 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.166 0.834 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.203 0.797 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.744 1.917 19.359 19.646 hybrid contribution -1.087 2.031 -0.748 2.423 sum -3.831 3.948 18.610 19.407 Atomic orbital electron populations 1.22484 0.96556 1.02395 1.02032 1.19731 0.91895 0.96130 0.87097 0.89311 1.60475 1.56737 1.09883 1.03195 1.22196 0.97750 0.94781 0.90512 1.18075 0.92624 0.92638 0.89770 1.21631 0.97605 0.98622 0.99793 1.21825 0.97652 0.98813 1.00695 1.21079 1.43530 0.95812 0.94108 0.93115 1.24885 0.95317 0.94957 0.98412 1.69839 1.44502 1.13961 1.23934 0.86741 0.78199 0.81103 0.82350 1.20473 1.21424 1.20525 1.22086 1.03837 0.91728 0.95268 1.23237 1.09253 0.96687 0.92137 1.47197 1.43354 1.07669 1.11322 1.22163 1.02923 1.05308 0.75307 1.78347 1.20427 1.10183 0.98764 1.75131 1.12505 1.14938 1.07945 0.92323 0.92689 0.91626 0.83412 0.92682 0.96754 0.90883 0.96544 0.95805 0.96803 0.96316 0.89931 0.93198 0.79721 0.89402 0.88683 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 9.14 37.16 0.34 -1.95 16 2 C 0.16 2.50 3.07 -68.86 -0.21 2.29 16 3 H 0.09 1.26 7.80 -51.93 -0.40 0.85 16 4 N -0.67 -12.72 5.32 -107.95 -0.57 -13.30 16 5 C 0.08 1.60 4.38 -3.83 -0.02 1.58 16 6 C 0.07 1.73 0.57 -155.66 -0.09 1.64 16 7 C -0.12 -3.05 8.09 37.16 0.30 -2.75 16 8 C -0.13 -3.23 7.92 37.16 0.29 -2.94 16 9 C -0.51 -13.85 8.01 -34.44 -0.28 -14.13 16 10 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 11 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 12 N -0.88 -25.06 9.35 55.43 0.52 -24.54 16 13 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.01 0.15 6.18 -82.78 -0.51 -0.36 16 18 C -0.06 -0.72 11.55 -17.04 -0.20 -0.92 16 19 N -0.30 -3.48 3.74 -68.06 -0.25 -3.74 16 20 C 0.08 0.47 11.39 59.85 0.68 1.15 16 21 N -0.10 -1.56 13.16 60.35 0.79 -0.76 16 22 N -0.24 -4.31 12.24 33.29 0.41 -3.90 16 23 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.88 7.45 -51.93 -0.39 0.49 16 26 H 0.35 6.76 6.51 -39.29 -0.26 6.51 16 27 H 0.05 1.18 8.06 -51.93 -0.42 0.76 16 28 H 0.01 0.30 7.44 -51.93 -0.39 -0.09 16 29 H 0.07 2.04 6.07 -51.93 -0.32 1.72 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.58 7.60 -51.93 -0.39 0.18 16 32 H 0.01 0.30 6.57 -51.93 -0.34 -0.04 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -32.31 314.80 -5.30 -37.61 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.14 Total: 2.17 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 0.22 Total: -14.67 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.89 Total: -46.24 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.31 -5.30 -37.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903017936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.173 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds