Wall clock time and date at job start Sun Mar 29 2020 23:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47047 * 2 1 4 4 N 1.46902 * 109.46555 * 240.00539 * 2 1 3 5 5 C 1.46898 * 111.00157 * 85.00220 * 4 2 1 6 6 C 1.52997 * 109.47123 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47164 * 299.99884 * 6 5 4 8 8 C 1.52999 * 109.47592 * 59.99590 * 6 5 4 9 9 C 1.50698 * 109.47342 * 179.97438 * 6 5 4 10 10 H 1.08003 * 120.00057 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00356 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99989 * 0.02562 * 11 9 6 13 13 Si 1.86798 * 120.00260 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.46926 * 60.00146 * 13 11 9 15 15 H 1.48500 * 109.47454 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 300.00528 * 13 11 9 17 17 C 1.50696 * 109.47394 * 120.00665 * 2 1 3 18 18 C 1.35350 * 126.74847 * 274.71218 * 17 2 1 19 19 N 1.35321 * 106.17353 * 179.84983 * 18 17 2 20 20 C 1.46502 * 125.86712 * 180.11437 * 19 18 17 21 21 N 1.28715 * 108.26123 * 0.41758 * 19 18 17 22 22 N 1.28633 * 110.18009 * 359.73018 * 21 19 18 23 23 H 1.08994 * 109.47047 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46780 * 299.99630 * 1 2 3 25 25 H 1.08998 * 109.46853 * 59.99382 * 1 2 3 26 26 H 1.00898 * 111.00159 * 321.04548 * 4 2 1 27 27 H 1.09001 * 109.47062 * 59.99599 * 5 4 2 28 28 H 1.09002 * 109.46774 * 299.99237 * 5 4 2 29 29 H 1.09001 * 109.46801 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.46998 * 299.99705 * 7 6 5 31 31 H 1.09000 * 109.47050 * 59.99996 * 7 6 5 32 32 H 1.09000 * 109.47160 * 300.00333 * 8 6 5 33 33 H 1.09002 * 109.46719 * 60.00054 * 8 6 5 34 34 H 1.08993 * 109.47839 * 179.97438 * 8 6 5 35 35 H 0.96996 * 119.99885 * 179.97438 * 12 11 9 36 36 H 1.07999 * 126.91405 * 359.97438 * 18 17 2 37 37 H 1.09001 * 109.46828 * 270.32285 * 20 19 18 38 38 H 1.08999 * 109.46970 * 30.32928 * 20 19 18 39 39 H 1.08997 * 109.46822 * 150.32721 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2227 -2.3469 6 6 2.5960 -0.5326 -3.5743 7 6 3.9934 -1.0849 -3.2854 8 6 1.6471 -1.6890 -3.8956 9 6 2.6599 0.4060 -4.7515 10 1 2.3641 1.4383 -4.6358 11 6 3.0969 -0.0527 -5.9761 12 7 3.4575 -1.3096 -6.1170 13 14 3.1767 1.1110 -7.4351 14 1 4.0975 2.2335 -7.1232 15 1 3.6751 0.3778 -8.6265 16 1 1.8204 1.6468 -7.7158 17 6 2.0325 -0.7105 1.2303 18 6 2.2184 -0.1712 2.4577 19 7 2.6744 -1.1733 3.2446 20 6 3.0152 -1.0619 4.6650 21 7 2.7633 -2.2394 2.5290 22 7 2.3877 -1.9969 1.3228 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.4495 -1.4978 -1.4102 27 1 2.7588 1.0463 -2.1182 28 1 1.0870 0.6164 -2.5525 29 1 4.3594 -1.6227 -4.1600 30 1 4.6695 -0.2611 -3.0566 31 1 3.9468 -1.7640 -2.4340 32 1 1.6005 -2.3681 -3.0442 33 1 0.6516 -1.2956 -4.1014 34 1 2.0127 -2.2269 -4.7702 35 1 3.7646 -1.6324 -6.9786 36 1 2.0372 0.8524 2.7507 37 1 4.0649 -0.7859 4.7662 38 1 2.3921 -0.2976 5.1294 39 1 2.8424 -2.0194 5.1562 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903017936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:14 Heat of formation + Delta-G solvation = 74.225241 kcal Electronic energy + Delta-G solvation = -18862.829176 eV Core-core repulsion = 16034.893176 eV Total energy + Delta-G solvation = -2827.936000 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.06581 -38.93735 -36.67466 -35.13989 -33.49251 -31.67866 -29.66428 -28.62488 -27.47559 -27.21809 -25.83413 -24.27483 -22.80603 -21.36986 -20.29773 -18.22686 -17.69386 -17.39920 -16.82215 -16.08768 -15.92470 -15.40219 -15.19777 -14.43236 -14.34122 -14.21015 -13.85620 -13.73766 -13.43354 -13.07746 -12.99386 -12.88191 -12.64662 -12.51405 -12.40893 -12.10674 -12.04774 -11.99408 -11.61531 -11.28093 -10.92542 -10.83453 -10.56596 -10.30701 -10.01851 -9.01567 -7.91983 -6.09628 0.76536 1.46418 1.46838 1.53971 1.67159 1.71923 2.49797 3.29744 3.41299 3.51038 4.01840 4.08065 4.26561 4.34140 4.38530 4.48619 4.62134 4.67068 4.69364 4.79835 4.91193 4.92694 5.02254 5.14109 5.19331 5.23087 5.33457 5.37182 5.48112 5.58047 5.73449 5.79828 5.82658 6.21341 6.34090 6.40721 6.54062 6.69959 7.00894 7.57914 7.69262 9.06172 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043867 B = 0.004403 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.133515 B = 6357.633313 C = 6519.799151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.165 3.835 3 H 0.102 0.898 4 N -0.682 5.682 5 C 0.093 3.907 6 C 0.059 3.941 7 C -0.103 4.103 8 C -0.119 4.119 9 C -0.524 4.524 10 H 0.050 0.950 11 C 0.019 3.981 12 N -0.906 5.906 13 Si 0.947 3.053 14 H -0.275 1.275 15 H -0.288 1.288 16 H -0.273 1.273 17 C -0.021 4.021 18 C -0.038 4.038 19 N -0.291 5.291 20 C 0.071 3.929 21 N -0.135 5.135 22 N -0.292 5.292 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.338 0.662 27 H 0.052 0.948 28 H 0.019 0.981 29 H 0.046 0.954 30 H 0.009 0.991 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.020 0.980 34 H 0.053 0.947 35 H 0.256 0.744 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.509 5.527 21.307 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.053 3.947 3 H 0.120 0.880 4 N -0.314 5.314 5 C -0.036 4.036 6 C 0.059 3.941 7 C -0.161 4.161 8 C -0.177 4.177 9 C -0.563 4.563 10 H 0.068 0.932 11 C -0.180 4.180 12 N -0.545 5.545 13 Si 0.774 3.226 14 H -0.200 1.200 15 H -0.214 1.214 16 H -0.199 1.199 17 C -0.161 4.161 18 C -0.190 4.190 19 N -0.085 5.085 20 C -0.068 4.068 21 N -0.114 5.114 22 N -0.158 5.158 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.158 0.842 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.250 0.750 37 H 0.121 0.879 38 H 0.151 0.849 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.366 3.951 21.377 21.998 hybrid contribution -0.866 1.413 -1.221 2.059 sum -4.232 5.364 20.156 21.283 Atomic orbital electron populations 1.22372 0.94983 1.01883 1.03224 1.19821 0.93174 0.96259 0.85446 0.88025 1.60376 1.57681 1.09657 1.03645 1.21839 0.97548 0.94327 0.89887 1.18140 0.92185 0.92744 0.91060 1.21444 0.98149 0.97982 0.98477 1.21641 0.97429 0.98731 0.99880 1.21421 1.43489 0.96182 0.95185 0.93180 1.25595 0.95157 0.96303 1.00906 1.69994 1.44966 1.15341 1.24242 0.85793 0.78349 0.79247 0.79240 1.20019 1.21413 1.19854 1.22239 1.05676 0.91485 0.96716 1.23860 1.06362 0.98148 0.90616 1.47667 1.41207 1.06631 1.12954 1.22693 1.04744 1.07110 0.72227 1.78237 1.22207 1.12104 0.98804 1.75049 1.14369 1.16892 1.09463 0.93672 0.89719 0.92084 0.84190 0.92966 0.96320 0.93523 0.97187 0.95597 0.95505 0.96118 0.92800 0.93462 0.74965 0.87879 0.84892 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 9.14 71.98 0.66 -3.34 16 2 C 0.17 4.75 3.07 44.17 0.14 4.88 16 3 H 0.10 2.61 7.80 -2.39 -0.02 2.60 16 4 N -0.68 -25.61 5.32 -495.45 -2.64 -28.25 16 5 C 0.09 3.87 4.38 86.30 0.38 4.24 16 6 C 0.06 2.97 0.57 -52.93 -0.03 2.94 16 7 C -0.10 -5.37 8.09 71.98 0.58 -4.79 16 8 C -0.12 -5.91 7.92 71.98 0.57 -5.34 16 9 C -0.52 -28.70 8.01 25.60 0.21 -28.50 16 10 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 11 C 0.02 1.06 5.15 84.65 0.44 1.49 16 12 N -0.91 -52.30 9.35 21.45 0.20 -52.10 16 13 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 15 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 17 C -0.02 -0.60 6.18 41.59 0.26 -0.35 16 18 C -0.04 -0.74 11.55 83.49 0.96 0.22 16 19 N -0.29 -5.97 3.74 -369.23 -1.38 -7.35 16 20 C 0.07 0.53 11.39 127.77 1.46 1.99 16 21 N -0.13 -4.20 13.16 37.02 0.49 -3.71 16 22 N -0.29 -10.54 12.24 -48.60 -0.59 -11.14 16 23 H 0.04 1.21 8.13 -2.39 -0.02 1.19 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.52 7.45 -2.39 -0.02 1.50 16 26 H 0.34 13.35 6.51 -89.70 -0.58 12.76 16 27 H 0.05 2.19 8.06 -2.39 -0.02 2.17 16 28 H 0.02 0.75 7.44 -2.39 -0.02 0.74 16 29 H 0.05 2.66 6.07 -2.39 -0.01 2.65 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.03 1.29 7.60 -2.39 -0.02 1.27 16 32 H 0.03 1.22 6.57 -2.39 -0.02 1.20 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 2.98 6.07 -2.39 -0.01 2.97 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.23 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -71.92 314.80 4.16 -67.76 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.45 Total: 15.38 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 5.61 Total: -26.54 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.92 Total: -102.55 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -71.92 4.16 -67.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903017936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.985 kcal (2) G-P(sol) polarization free energy of solvation -71.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds