Wall clock time and date at job start Sun Mar 29 2020 23:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00376 * 2 1 4 4 C 1.46897 * 111.00222 * 123.95652 * 2 1 3 5 5 H 1.09003 * 112.95139 * 210.72025 * 4 2 1 6 6 C 1.53955 * 113.65960 * 342.11922 * 4 2 1 7 7 C 1.53955 * 87.29601 * 139.20674 * 6 4 2 8 8 H 1.08998 * 113.74905 * 220.78737 * 7 6 4 9 9 N 1.46500 * 113.66318 * 89.73757 * 7 6 4 10 10 C 1.34769 * 119.99860 * 108.09146 * 9 7 6 11 11 O 1.21695 * 120.00350 * 359.72078 * 10 9 7 12 12 C 1.46377 * 120.00171 * 179.72532 * 10 9 7 13 13 H 1.07998 * 119.99587 * 6.11272 * 12 10 9 14 14 C 1.40047 * 120.00141 * 186.10833 * 12 10 9 15 15 N 1.30673 * 120.00301 * 353.78435 * 14 12 10 16 16 Si 1.86804 * 119.99990 * 173.77873 * 14 12 10 17 17 H 1.48496 * 109.47108 * 94.98667 * 16 14 12 18 18 H 1.48499 * 109.46925 * 214.98751 * 16 14 12 19 19 H 1.48497 * 109.47132 * 334.98727 * 16 14 12 20 20 C 1.52909 * 113.66418 * 79.30579 * 4 2 1 21 21 C 1.52907 * 121.13828 * 346.35098 * 20 4 2 22 22 C 1.53950 * 86.78006 * 100.81759 * 21 20 4 23 23 C 1.52910 * 121.13476 * 94.91302 * 20 4 2 24 24 H 1.09006 * 109.46550 * 296.04679 * 1 2 3 25 25 H 1.08996 * 109.46966 * 56.04314 * 1 2 3 26 26 H 1.08997 * 109.46885 * 176.04520 * 1 2 3 27 27 H 1.08998 * 109.47381 * 188.39164 * 3 2 1 28 28 H 1.09007 * 109.46636 * 308.39199 * 3 2 1 29 29 H 1.09004 * 109.47167 * 68.38878 * 3 2 1 30 30 H 1.09000 * 113.58098 * 24.60887 * 6 4 2 31 31 H 1.08995 * 113.58376 * 253.80612 * 6 4 2 32 32 H 0.97005 * 120.00017 * 287.81642 * 9 7 6 33 33 H 0.96993 * 120.00183 * 179.97438 * 15 14 12 34 34 H 1.08992 * 113.66465 * 215.29279 * 21 20 4 35 35 H 1.09005 * 113.65728 * 346.35119 * 21 20 4 36 36 H 1.09000 * 113.58294 * 270.12808 * 22 21 20 37 37 H 1.09003 * 113.65029 * 139.35306 * 22 21 20 38 38 H 1.08997 * 113.66493 * 13.65416 * 23 20 4 39 39 H 1.08998 * 113.66320 * 144.61878 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 2.9534 -0.3896 1.4965 6 6 0.9641 -0.9977 2.2567 7 6 1.5220 -2.4277 2.3750 8 1 0.7544 -3.1879 2.5196 9 7 2.6307 -2.5496 3.3249 10 6 2.4421 -3.1742 4.5041 11 8 1.3495 -3.6325 4.7821 12 6 3.5513 -3.3013 5.4507 13 1 4.4920 -2.8104 5.2492 14 6 3.3928 -4.0594 6.6175 15 7 2.2216 -4.5521 6.9225 16 14 4.8557 -4.3662 7.7379 17 1 4.8700 -3.3519 8.8224 18 1 4.7488 -5.7234 8.3310 19 1 6.1112 -4.2673 6.9511 20 6 1.9728 -2.2796 0.9213 21 6 1.1719 -2.9030 -0.2223 22 6 2.5076 -3.0193 -0.9788 23 6 3.2020 -3.0216 0.3952 24 1 -0.3632 0.4513 0.9234 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0749 1.3463 -0.1500 28 1 1.5299 1.9393 -0.8055 29 1 1.7724 1.8463 0.9555 30 1 -0.0693 -0.9601 1.9120 31 1 1.1376 -0.3874 3.1429 32 1 3.5016 -2.1842 3.1034 33 1 2.1119 -5.0775 7.7305 34 1 0.7265 -3.8654 0.0294 35 1 0.4646 -2.2157 -0.6865 36 1 2.7431 -2.1444 -1.5849 37 1 2.6203 -3.9553 -1.5259 38 1 4.1164 -2.4291 0.4243 39 1 3.3280 -4.0167 0.8216 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912601077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:09 Heat of formation + Delta-G solvation = 20.027154 kcal Electronic energy + Delta-G solvation = -19442.464830 eV Core-core repulsion = 16579.885874 eV Total energy + Delta-G solvation = -2862.578956 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78809 -36.94755 -36.25766 -34.01435 -32.43028 -30.82535 -27.90684 -26.46987 -25.42492 -24.88453 -24.27522 -21.82441 -20.40836 -19.45570 -17.65973 -17.04160 -15.90801 -15.66006 -15.40250 -15.15988 -14.61509 -13.95793 -13.92745 -13.21650 -12.89872 -12.62139 -12.29285 -12.21635 -12.00392 -11.93072 -11.76234 -11.62806 -11.31474 -11.16999 -10.99917 -10.83601 -10.54369 -10.45107 -10.22071 -9.86039 -9.64922 -9.43844 -8.83495 -8.12850 -7.59537 -7.43950 -6.18526 -4.62579 3.14003 3.21472 3.25398 4.00613 4.10848 4.57251 4.58874 4.75269 4.95589 5.10057 5.17213 5.17690 5.23048 5.34485 5.40952 5.49356 5.70118 5.70960 5.79078 5.83043 5.83906 5.94993 6.02789 6.12267 6.17280 6.23715 6.30992 6.36114 6.44682 6.64771 6.72212 6.84508 7.16017 7.19232 7.44544 7.95794 8.15943 8.36431 9.03675 9.56832 10.61359 10.80354 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.005414 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.745338 B = 5170.700610 C = 5324.554877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.531 5.531 3 C 0.024 3.976 4 C 0.088 3.912 5 H 0.096 0.904 6 C -0.189 4.189 7 C 0.157 3.843 8 H 0.090 0.910 9 N -0.744 5.744 10 C 0.557 3.443 11 O -0.580 6.580 12 C -0.546 4.546 13 H 0.067 0.933 14 C 0.089 3.911 15 N -0.768 5.768 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.264 1.264 20 C -0.103 4.103 21 C -0.113 4.113 22 C -0.131 4.131 23 C -0.120 4.120 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.379 0.621 33 H 0.268 0.732 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 7.627 -13.727 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.253 5.253 3 C -0.124 4.124 4 C -0.020 4.020 5 H 0.114 0.886 6 C -0.230 4.230 7 C 0.048 3.952 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.361 3.639 11 O -0.463 6.463 12 C -0.583 4.583 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.105 4.105 21 C -0.151 4.151 22 C -0.168 4.168 23 C -0.158 4.158 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.211 0.789 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.389 6.951 -13.806 15.462 hybrid contribution 0.899 0.547 1.263 1.644 sum 0.510 7.499 -12.543 14.622 Atomic orbital electron populations 1.22684 0.87948 1.02640 1.00050 1.61993 1.07679 1.13002 1.42659 1.22382 1.00635 0.89406 1.00010 1.22940 0.98138 0.92293 0.88670 0.88626 1.24215 0.99409 1.00649 0.98734 1.21105 0.91463 0.95324 0.87281 0.89231 1.45796 1.11023 1.63982 1.18791 1.18231 0.89226 0.76899 0.79577 1.90594 1.27029 1.51902 1.76793 1.20869 0.98661 1.33862 1.04904 0.91487 1.25691 0.95993 0.94013 0.97414 1.70026 1.22583 1.25295 1.21764 0.86389 0.82197 0.78104 0.80259 1.19881 1.20401 1.18849 1.23024 0.98098 0.94374 0.95016 1.22640 0.96769 1.00125 0.95540 1.22732 0.96714 1.01057 0.96302 1.22594 0.96483 1.00663 0.96030 0.94960 0.92136 0.90316 0.91596 0.91897 0.95686 0.89384 0.91522 0.78920 0.92152 0.90538 0.90449 0.90086 0.92537 0.92038 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 7.68 60.07 0.46 0.63 16 2 N -0.53 -6.54 4.66 -242.62 -1.13 -7.67 16 3 C 0.02 0.26 9.49 60.07 0.57 0.83 16 4 C 0.09 1.26 3.81 -67.26 -0.26 1.00 16 5 H 0.10 1.40 7.89 -51.93 -0.41 0.99 16 6 C -0.19 -3.16 6.67 -25.74 -0.17 -3.33 16 7 C 0.16 3.04 4.13 -67.48 -0.28 2.76 16 8 H 0.09 2.01 7.46 -51.93 -0.39 1.62 16 9 N -0.74 -16.59 5.04 -54.77 -0.28 -16.87 16 10 C 0.56 15.85 7.74 -12.99 -0.10 15.75 16 11 O -0.58 -18.87 14.64 5.19 0.08 -18.80 16 12 C -0.55 -15.47 9.53 -35.63 -0.34 -15.81 16 13 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 14 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 15 N -0.77 -23.17 11.85 55.55 0.66 -22.51 16 16 Si 0.91 20.22 29.56 -169.99 -5.03 15.19 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 20 C -0.10 -1.57 0.89 -154.71 -0.14 -1.71 16 21 C -0.11 -1.53 7.18 -26.28 -0.19 -1.72 16 22 C -0.13 -1.65 8.08 -25.75 -0.21 -1.86 16 23 C -0.12 -1.75 7.49 -26.28 -0.20 -1.94 16 24 H 0.03 0.38 6.62 -51.93 -0.34 0.03 16 25 H 0.06 0.58 8.07 -51.93 -0.42 0.17 16 26 H 0.08 0.91 4.97 -51.93 -0.26 0.65 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 29 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 30 H 0.09 1.36 5.35 -51.93 -0.28 1.08 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.38 7.60 8.60 -40.82 -0.35 7.25 16 33 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.97 4.90 -51.93 -0.25 0.72 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -32.88 308.45 -8.04 -40.92 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.05 Total: 8.10 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.94 Total: -3.01 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.75 Total: -47.05 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.08 Total: -18.80 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.88 -8.04 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912601077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.950 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds