Wall clock time and date at job start Sun Mar 29 2020 23:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46815 * 2 1 4 4 N 1.46899 * 109.46958 * 119.99958 * 2 1 3 5 5 C 1.46901 * 110.99876 * 274.99909 * 4 2 1 6 6 C 1.53004 * 109.47053 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47483 * 300.00442 * 6 5 4 8 8 C 1.52998 * 109.46721 * 60.00537 * 6 5 4 9 9 C 1.50702 * 109.47075 * 179.97438 * 6 5 4 10 10 H 1.08002 * 120.00115 * 1.31468 * 9 6 5 11 11 C 1.37876 * 119.99846 * 181.30401 * 9 6 5 12 12 N 1.31514 * 119.99788 * 194.40631 * 11 9 6 13 13 Si 1.86797 * 120.00219 * 14.40932 * 11 9 6 14 14 H 1.48504 * 109.46986 * 84.71702 * 13 11 9 15 15 H 1.48497 * 109.47332 * 204.71908 * 13 11 9 16 16 H 1.48503 * 109.47056 * 324.72020 * 13 11 9 17 17 C 1.50693 * 109.47228 * 239.99786 * 2 1 3 18 18 C 1.35353 * 126.91531 * 276.49912 * 17 2 1 19 19 N 1.33774 * 106.49769 * 179.97438 * 18 17 2 20 20 N 1.28634 * 108.88520 * 0.02562 * 19 18 17 21 21 N 1.28719 * 110.18033 * 359.75275 * 20 19 18 22 22 C 1.46500 * 125.86823 * 180.24247 * 21 20 19 23 23 H 1.08996 * 109.47229 * 305.00212 * 1 2 3 24 24 H 1.08996 * 109.46480 * 64.99792 * 1 2 3 25 25 H 1.09001 * 109.46749 * 184.99597 * 1 2 3 26 26 H 1.00893 * 111.00331 * 38.95335 * 4 2 1 27 27 H 1.09008 * 109.46989 * 60.00336 * 5 4 2 28 28 H 1.08996 * 109.47480 * 300.00044 * 5 4 2 29 29 H 1.08998 * 109.46938 * 69.37386 * 7 6 5 30 30 H 1.09002 * 109.47259 * 189.38062 * 7 6 5 31 31 H 1.09003 * 109.46625 * 309.37458 * 7 6 5 32 32 H 1.08996 * 109.47336 * 59.99991 * 8 6 5 33 33 H 1.09007 * 109.47025 * 179.97438 * 8 6 5 34 34 H 1.09003 * 109.47236 * 299.99615 * 8 6 5 35 35 H 0.97007 * 120.00124 * 180.02562 * 12 11 9 36 36 H 1.07996 * 126.75163 * 359.94836 * 18 17 2 37 37 H 1.08998 * 109.47139 * 274.84325 * 22 21 20 38 38 H 1.08992 * 109.47229 * 34.84487 * 22 21 20 39 39 H 1.09001 * 109.46759 * 154.84842 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 1.6452 -1.6889 3.8953 8 6 3.9921 -1.0861 3.2863 9 6 2.6600 0.4058 4.7515 10 1 2.3452 1.4330 4.6409 11 6 3.1212 -0.0465 5.9695 12 7 2.9191 0.6673 7.0554 13 14 4.0331 -1.6732 6.0774 14 1 5.4693 -1.4570 5.7677 15 1 3.9003 -2.2251 7.4496 16 1 3.4548 -2.6306 5.1006 17 6 2.0324 -0.7104 -1.2304 18 6 2.1879 -2.0452 -1.3919 19 7 2.6551 -2.2260 -2.6323 20 7 2.7810 -1.0790 -3.2009 21 7 2.4142 -0.1425 -2.3978 22 6 2.4130 1.2920 -2.6953 23 1 -0.3633 0.5894 0.8418 24 1 -0.3632 0.4343 -0.9314 25 1 -0.3633 -1.0238 0.0895 26 1 1.4496 -1.4978 1.4101 27 1 1.0870 0.6164 2.5525 28 1 2.7588 1.0462 2.1183 29 1 1.7242 -2.4501 3.1192 30 1 1.9132 -2.1228 4.8586 31 1 0.6214 -1.3169 3.9365 32 1 4.6688 -0.2628 3.0578 33 1 4.3575 -1.6242 4.1610 34 1 3.9456 -1.7652 2.4349 35 1 3.2439 0.3493 7.9124 36 1 1.9768 -2.8133 -0.6626 37 1 3.4020 1.7050 -2.4967 38 1 2.1592 1.4453 -3.7441 39 1 1.6771 1.7929 -2.0663 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926568064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:18 Heat of formation + Delta-G solvation = 112.281896 kcal Electronic energy + Delta-G solvation = -19208.858161 eV Core-core repulsion = 16382.572422 eV Total energy + Delta-G solvation = -2826.285739 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.19288 -37.86799 -35.43804 -34.53941 -31.99039 -30.60635 -28.91790 -27.99303 -26.24945 -25.33891 -24.58955 -23.42283 -21.98438 -20.38266 -18.92004 -17.31469 -16.60828 -16.12723 -15.60749 -15.16654 -14.72774 -14.47160 -13.83070 -13.48930 -13.18001 -13.08308 -12.97540 -12.78542 -12.51997 -12.40169 -11.99193 -11.87831 -11.66368 -11.42018 -11.08203 -10.72354 -10.36854 -10.13697 -10.07835 -10.02322 -9.92180 -9.07583 -8.99252 -8.59948 -8.40019 -8.08108 -6.12371 -4.08459 1.62485 2.33121 2.69257 3.30897 3.40519 3.44073 4.12752 4.41113 4.42423 4.59816 4.77859 4.88466 4.99411 5.04031 5.08920 5.21069 5.37776 5.55636 5.67233 5.82140 5.87031 5.96960 6.06990 6.24767 6.28691 6.40752 6.56715 6.58028 6.61546 6.77685 6.88836 6.97282 7.29122 7.33774 7.50863 7.65483 7.85444 8.49014 8.57199 8.91539 9.53902 11.00822 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.005279 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.890413 B = 5302.864746 C = 5554.720986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.155 3.845 3 H 0.088 0.912 4 N -0.679 5.679 5 C 0.087 3.913 6 C 0.041 3.959 7 C -0.144 4.144 8 C -0.137 4.137 9 C -0.514 4.514 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.896 5.896 13 Si 0.888 3.112 14 H -0.287 1.287 15 H -0.308 1.308 16 H -0.248 1.248 17 C 0.008 3.992 18 C -0.035 4.035 19 N -0.275 5.275 20 N -0.099 5.099 21 N -0.294 5.294 22 C 0.080 3.920 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.344 0.656 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.186 0.814 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 0.270 -15.496 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.042 3.958 3 H 0.106 0.894 4 N -0.311 5.311 5 C -0.041 4.041 6 C 0.040 3.960 7 C -0.202 4.202 8 C -0.193 4.193 9 C -0.552 4.552 10 H 0.089 0.911 11 C -0.128 4.128 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.215 1.215 15 H -0.237 1.237 16 H -0.174 1.174 17 C -0.125 4.125 18 C -0.192 4.192 19 N -0.140 5.140 20 N -0.078 5.078 21 N -0.088 5.088 22 C -0.061 4.061 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.164 0.836 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.203 0.797 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.243 0.071 -16.894 17.203 hybrid contribution -0.673 -0.233 1.531 1.689 sum -3.917 -0.162 -15.363 15.855 Atomic orbital electron populations 1.22497 0.95575 1.03106 1.02418 1.19792 0.92552 0.96761 0.86673 0.89442 1.60504 1.56659 1.10440 1.03483 1.22022 0.98874 0.94394 0.88832 1.18462 0.91561 0.93321 0.92629 1.22295 0.99509 0.98078 1.00296 1.22188 0.98872 0.99664 0.98619 1.20824 1.44203 0.97674 0.92507 0.91108 1.24972 0.95492 0.96974 0.95354 1.69964 1.45065 1.39659 0.98601 0.87258 0.80339 0.85388 0.74961 1.21523 1.23739 1.17368 1.22214 1.05856 0.94369 0.90082 1.23224 1.05542 0.94958 0.95484 1.75037 1.16027 1.15668 1.07297 1.78246 1.19685 0.91303 1.18608 1.47112 1.42586 1.09216 1.09910 1.22224 1.05039 0.74401 1.04475 0.91092 0.92570 0.91703 0.83615 0.95424 0.91724 0.95330 0.92758 0.94107 0.93709 0.95084 0.93716 0.92701 0.79655 0.89051 0.88297 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.15 37.16 0.34 -1.42 16 2 C 0.16 1.81 2.69 -68.87 -0.19 1.63 16 3 H 0.09 0.97 7.07 -51.93 -0.37 0.60 16 4 N -0.68 -9.74 5.17 -107.95 -0.56 -10.30 16 5 C 0.09 1.51 4.37 -3.82 -0.02 1.50 16 6 C 0.04 0.88 0.57 -155.66 -0.09 0.79 16 7 C -0.14 -2.89 7.25 37.16 0.27 -2.62 16 8 C -0.14 -2.90 7.52 37.16 0.28 -2.62 16 9 C -0.51 -13.55 8.62 -34.44 -0.30 -13.85 16 10 H 0.07 2.02 7.99 -52.49 -0.42 1.61 16 11 C 0.07 2.06 5.31 -17.82 -0.09 1.97 16 12 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 13 Si 0.89 21.63 22.81 -169.99 -3.88 17.76 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.31 -7.67 7.11 56.52 0.40 -7.27 16 16 H -0.25 -5.57 4.65 56.52 0.26 -5.31 16 17 C 0.01 0.10 6.02 -82.09 -0.49 -0.40 16 18 C -0.03 -0.49 11.64 -17.73 -0.21 -0.70 16 19 N -0.27 -4.42 12.41 30.23 0.38 -4.04 16 20 N -0.10 -1.50 13.17 60.35 0.79 -0.70 16 21 N -0.29 -3.57 3.74 -63.79 -0.24 -3.81 16 22 C 0.08 0.57 11.11 59.85 0.66 1.23 16 23 H 0.07 0.73 7.58 -51.93 -0.39 0.33 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 26 H 0.34 4.72 6.67 -39.30 -0.26 4.46 16 27 H 0.03 0.48 7.53 -51.92 -0.39 0.09 16 28 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 29 H 0.03 0.49 7.05 -51.93 -0.37 0.12 16 30 H 0.05 1.19 4.34 -51.93 -0.23 0.96 16 31 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.70 2.23 -51.93 -0.12 0.58 16 34 H 0.04 0.86 7.60 -51.93 -0.39 0.46 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.50 7.36 -51.93 -0.38 0.11 16 LS Contribution 302.95 15.07 4.57 4.57 Total: -1.00 -31.80 302.95 -3.96 -35.76 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.96 Total: 1.19 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 0.17 Total: -14.48 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 1.15 Total: -44.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -3.88 Total: 17.76 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.80 -3.96 -35.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926568064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.037 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds