Wall clock time and date at job start Sun Mar 29 2020 23:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46815 * 2 1 4 4 N 1.46899 * 109.46958 * 119.99958 * 2 1 3 5 5 C 1.46901 * 110.99876 * 274.99909 * 4 2 1 6 6 C 1.53004 * 109.47053 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47483 * 300.00442 * 6 5 4 8 8 C 1.52998 * 109.46721 * 60.00537 * 6 5 4 9 9 C 1.50702 * 109.47075 * 179.97438 * 6 5 4 10 10 H 1.08002 * 120.00115 * 1.31468 * 9 6 5 11 11 C 1.37876 * 119.99846 * 181.30401 * 9 6 5 12 12 N 1.31514 * 119.99788 * 194.40631 * 11 9 6 13 13 Si 1.86797 * 120.00219 * 14.40932 * 11 9 6 14 14 H 1.48504 * 109.46986 * 84.71702 * 13 11 9 15 15 H 1.48497 * 109.47332 * 204.71908 * 13 11 9 16 16 H 1.48503 * 109.47056 * 324.72020 * 13 11 9 17 17 C 1.50693 * 109.47228 * 239.99786 * 2 1 3 18 18 C 1.35353 * 126.91531 * 276.49912 * 17 2 1 19 19 N 1.33774 * 106.49769 * 179.97438 * 18 17 2 20 20 N 1.28634 * 108.88520 * 0.02562 * 19 18 17 21 21 N 1.28719 * 110.18033 * 359.75275 * 20 19 18 22 22 C 1.46500 * 125.86823 * 180.24247 * 21 20 19 23 23 H 1.08996 * 109.47229 * 305.00212 * 1 2 3 24 24 H 1.08996 * 109.46480 * 64.99792 * 1 2 3 25 25 H 1.09001 * 109.46749 * 184.99597 * 1 2 3 26 26 H 1.00893 * 111.00331 * 38.95335 * 4 2 1 27 27 H 1.09008 * 109.46989 * 60.00336 * 5 4 2 28 28 H 1.08996 * 109.47480 * 300.00044 * 5 4 2 29 29 H 1.08998 * 109.46938 * 69.37386 * 7 6 5 30 30 H 1.09002 * 109.47259 * 189.38062 * 7 6 5 31 31 H 1.09003 * 109.46625 * 309.37458 * 7 6 5 32 32 H 1.08996 * 109.47336 * 59.99991 * 8 6 5 33 33 H 1.09007 * 109.47025 * 179.97438 * 8 6 5 34 34 H 1.09003 * 109.47236 * 299.99615 * 8 6 5 35 35 H 0.97007 * 120.00124 * 180.02562 * 12 11 9 36 36 H 1.07996 * 126.75163 * 359.94836 * 18 17 2 37 37 H 1.08998 * 109.47139 * 274.84325 * 22 21 20 38 38 H 1.08992 * 109.47229 * 34.84487 * 22 21 20 39 39 H 1.09001 * 109.46759 * 154.84842 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 1.6452 -1.6889 3.8953 8 6 3.9921 -1.0861 3.2863 9 6 2.6600 0.4058 4.7515 10 1 2.3452 1.4330 4.6409 11 6 3.1212 -0.0465 5.9695 12 7 2.9191 0.6673 7.0554 13 14 4.0331 -1.6732 6.0774 14 1 5.4693 -1.4570 5.7677 15 1 3.9003 -2.2251 7.4496 16 1 3.4548 -2.6306 5.1006 17 6 2.0324 -0.7104 -1.2304 18 6 2.1879 -2.0452 -1.3919 19 7 2.6551 -2.2260 -2.6323 20 7 2.7810 -1.0790 -3.2009 21 7 2.4142 -0.1425 -2.3978 22 6 2.4130 1.2920 -2.6953 23 1 -0.3633 0.5894 0.8418 24 1 -0.3632 0.4343 -0.9314 25 1 -0.3633 -1.0238 0.0895 26 1 1.4496 -1.4978 1.4101 27 1 1.0870 0.6164 2.5525 28 1 2.7588 1.0462 2.1183 29 1 1.7242 -2.4501 3.1192 30 1 1.9132 -2.1228 4.8586 31 1 0.6214 -1.3169 3.9365 32 1 4.6688 -0.2628 3.0578 33 1 4.3575 -1.6242 4.1610 34 1 3.9456 -1.7652 2.4349 35 1 3.2439 0.3493 7.9124 36 1 1.9768 -2.8133 -0.6626 37 1 3.4020 1.7050 -2.4967 38 1 2.1592 1.4453 -3.7441 39 1 1.6771 1.7929 -2.0663 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926568064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:18 Heat of formation + Delta-G solvation = 88.594962 kcal Electronic energy + Delta-G solvation = -19209.885303 eV Core-core repulsion = 16382.572422 eV Total energy + Delta-G solvation = -2827.312882 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.18249 -39.22653 -36.80113 -35.47100 -33.90650 -31.86234 -29.91721 -28.72907 -27.88409 -27.06909 -26.11416 -24.49689 -23.02841 -21.34333 -20.58050 -18.33644 -17.98648 -17.51972 -17.29588 -16.34778 -15.86625 -15.64289 -14.97654 -14.74492 -14.64537 -14.30484 -14.09192 -13.89762 -13.68622 -13.66172 -13.65086 -13.21173 -12.69137 -12.54379 -12.39904 -12.25512 -11.91262 -11.83198 -11.69302 -11.57797 -10.97126 -10.90777 -10.54022 -10.29892 -10.04795 -9.25430 -8.26696 -6.24328 0.65329 1.37923 1.42074 1.51341 1.53210 1.64901 2.38055 3.10481 3.15513 3.59741 3.74294 4.00584 4.10260 4.16951 4.29928 4.32658 4.48841 4.51223 4.60202 4.63149 4.72407 4.85831 4.88896 4.94054 4.98472 5.06517 5.13270 5.22670 5.27614 5.30103 5.36010 5.64070 5.68686 5.79432 5.90160 6.16163 6.37603 6.57202 6.82961 7.41232 7.54853 8.90161 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.005279 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.890413 B = 5302.864746 C = 5554.720986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.161 3.839 3 H 0.097 0.903 4 N -0.680 5.680 5 C 0.103 3.897 6 C 0.035 3.965 7 C -0.142 4.142 8 C -0.133 4.133 9 C -0.507 4.507 10 H 0.035 0.965 11 C 0.019 3.981 12 N -0.947 5.947 13 Si 0.938 3.062 14 H -0.291 1.291 15 H -0.319 1.319 16 H -0.212 1.212 17 C 0.011 3.989 18 C -0.047 4.047 19 N -0.310 5.310 20 N -0.123 5.123 21 N -0.285 5.285 22 C 0.066 3.934 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.350 0.650 27 H 0.028 0.972 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.261 0.739 36 H 0.199 0.801 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 -0.456 -17.319 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.049 3.951 3 H 0.115 0.885 4 N -0.313 5.313 5 C -0.026 4.026 6 C 0.034 3.966 7 C -0.199 4.199 8 C -0.190 4.190 9 C -0.546 4.546 10 H 0.053 0.947 11 C -0.178 4.178 12 N -0.588 5.588 13 Si 0.769 3.231 14 H -0.219 1.219 15 H -0.249 1.249 16 H -0.135 1.135 17 C -0.123 4.123 18 C -0.205 4.205 19 N -0.175 5.175 20 N -0.102 5.102 21 N -0.080 5.080 22 C -0.074 4.074 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.171 0.829 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.216 0.784 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.793 -0.656 -18.779 19.169 hybrid contribution -0.540 0.138 2.040 2.115 sum -4.333 -0.518 -16.739 17.298 Atomic orbital electron populations 1.22430 0.93912 1.03451 1.03218 1.19803 0.93703 0.96701 0.84903 0.88456 1.60336 1.57645 1.10212 1.03063 1.21645 0.98418 0.94051 0.88499 1.18478 0.92617 0.93226 0.92287 1.22204 0.99265 0.98170 1.00300 1.22133 0.98163 0.99758 0.98946 1.21215 1.42046 0.97061 0.94261 0.94718 1.25726 0.96589 1.00349 0.95167 1.70105 1.47402 1.42001 0.99264 0.86439 0.78883 0.82649 0.75081 1.21947 1.24936 1.13544 1.22296 1.05500 0.94056 0.90484 1.23567 1.05620 0.96065 0.95265 1.74992 1.17423 1.16618 1.08427 1.78171 1.20801 0.91746 1.19447 1.47475 1.40803 1.10488 1.09247 1.22697 1.06573 0.71835 1.06287 0.91250 0.90985 0.91460 0.82904 0.95422 0.92518 0.91883 0.94729 0.93532 0.94471 0.96326 0.91214 0.92987 0.78426 0.87968 0.86612 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.15 71.98 0.66 -2.13 16 2 C 0.16 3.21 2.69 44.17 0.12 3.33 16 3 H 0.10 1.79 7.07 -2.39 -0.02 1.77 16 4 N -0.68 -17.17 5.17 -495.44 -2.56 -19.73 16 5 C 0.10 3.34 4.37 86.30 0.38 3.71 16 6 C 0.04 1.42 0.57 -52.93 -0.03 1.39 16 7 C -0.14 -5.24 7.25 71.98 0.52 -4.72 16 8 C -0.13 -5.29 7.52 71.98 0.54 -4.74 16 9 C -0.51 -26.84 8.62 25.60 0.22 -26.62 16 10 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 11 C 0.02 1.05 5.31 84.65 0.45 1.50 16 12 N -0.95 -58.13 13.96 21.45 0.30 -57.83 16 13 Si 0.94 44.29 22.81 68.60 1.56 45.85 16 14 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 15 H -0.32 -15.54 7.11 99.48 0.71 -14.83 16 16 H -0.21 -8.73 4.65 99.48 0.46 -8.27 16 17 C 0.01 0.24 6.02 41.35 0.25 0.49 16 18 C -0.05 -1.22 11.64 83.73 0.97 -0.24 16 19 N -0.31 -9.57 12.41 -58.26 -0.72 -10.30 16 20 N -0.12 -3.51 13.17 37.02 0.49 -3.02 16 21 N -0.29 -6.21 3.74 -355.74 -1.33 -7.54 16 22 C 0.07 0.72 11.11 127.77 1.42 2.14 16 23 H 0.07 1.19 7.58 -2.39 -0.02 1.17 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 1.09 8.04 -2.39 -0.02 1.07 16 26 H 0.35 8.18 6.67 -89.70 -0.60 7.59 16 27 H 0.03 0.90 7.53 -2.38 -0.02 0.88 16 28 H 0.06 1.93 8.05 -2.39 -0.02 1.92 16 29 H 0.06 1.89 7.05 -2.39 -0.02 1.87 16 30 H 0.03 1.40 4.34 -2.39 -0.01 1.39 16 31 H 0.05 1.64 8.12 -2.39 -0.02 1.62 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.02 0.78 2.23 -2.38 -0.01 0.78 16 34 H 0.07 2.41 7.60 -2.39 -0.02 2.39 16 35 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 36 H 0.20 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.12 0.76 7.36 -2.39 -0.02 0.74 16 Total: -1.00 -69.85 302.95 3.44 -66.41 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.20 Total: 12.06 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 5.50 Total: -25.89 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -3.83 Total: -98.43 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.56 Total: 45.85 kcal Total: -69.85 3.44 -66.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926568064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.002 kcal (2) G-P(sol) polarization free energy of solvation -69.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds