Wall clock time and date at job start Sun Mar 29 2020 23:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47384 * 2 1 4 4 C 1.35309 * 125.87116 * 125.32637 * 3 2 1 5 5 C 1.35349 * 106.17839 * 180.11797 * 4 3 2 6 6 C 1.50704 * 126.75253 * 179.85426 * 5 4 3 7 7 N 1.46893 * 109.47268 * 93.07852 * 6 5 4 8 8 C 1.46900 * 111.00348 * 199.11803 * 7 6 5 9 9 C 1.50701 * 109.47325 * 170.00296 * 8 7 6 10 10 H 1.08001 * 119.99696 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99683 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00168 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99759 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47270 * 59.99569 * 13 11 9 15 15 H 1.48493 * 109.47181 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47082 * 299.99760 * 13 11 9 17 17 C 1.46906 * 110.99996 * 75.16470 * 7 6 5 18 18 C 1.53004 * 109.46826 * 273.11038 * 17 7 6 19 19 C 1.52997 * 109.47069 * 33.10382 * 17 7 6 20 20 N 1.33764 * 106.49341 * 359.59329 * 5 4 3 21 21 N 1.28635 * 108.89172 * 0.25874 * 20 5 4 22 22 H 1.09002 * 109.46655 * 300.00159 * 1 2 3 23 23 H 1.09000 * 109.47258 * 59.99579 * 1 2 3 24 24 H 1.08995 * 109.47663 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46655 * 239.99841 * 2 1 3 26 26 H 1.08993 * 109.47125 * 120.00050 * 2 1 3 27 27 H 1.08005 * 126.91089 * 359.97375 * 4 3 2 28 28 H 1.09002 * 109.46816 * 333.07762 * 6 5 4 29 29 H 1.08992 * 109.46783 * 213.08289 * 6 5 4 30 30 H 1.08999 * 109.47040 * 290.00285 * 8 7 6 31 31 H 1.09005 * 109.46910 * 49.99868 * 8 7 6 32 32 H 0.97003 * 119.99989 * 179.97438 * 12 11 9 33 33 H 1.08990 * 109.47104 * 153.11231 * 17 7 6 34 34 H 1.09008 * 109.46868 * 172.07140 * 18 17 7 35 35 H 1.09003 * 109.46964 * 292.06821 * 18 17 7 36 36 H 1.09002 * 109.47391 * 52.06995 * 18 17 7 37 37 H 1.08996 * 109.47369 * 300.00903 * 19 17 7 38 38 H 1.09010 * 109.46498 * 60.00128 * 19 17 7 39 39 H 1.08998 * 109.47583 * 180.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8805 1.9173 0.8946 5 6 3.0546 3.2074 0.5240 6 6 3.9242 4.2320 1.2060 7 7 5.2525 4.2425 0.5788 8 6 6.2472 4.8651 1.4625 9 6 7.6278 4.6409 0.9015 10 1 7.7537 4.0906 -0.0192 11 6 8.7301 5.1375 1.5642 12 7 8.5767 5.8071 2.6856 13 14 10.4415 4.8590 0.8693 14 1 10.5318 5.4667 -0.4827 15 1 11.4470 5.4884 1.7625 16 1 10.7063 3.4008 0.7751 17 6 5.2131 4.9158 -0.7263 18 6 4.8306 3.9056 -1.8099 19 6 4.1764 6.0404 -0.6888 20 7 2.3075 3.3924 -0.5700 21 7 1.7061 2.2916 -0.8547 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.3360 1.4172 1.7365 28 1 4.0229 3.9798 2.2618 29 1 3.4687 5.2174 1.1090 30 1 6.0524 5.9353 1.5316 31 1 6.1813 4.4189 2.4549 32 1 9.3523 6.1562 3.1521 33 1 6.1947 5.3336 -0.9493 34 1 4.6638 4.4287 -2.7517 35 1 5.6370 3.1828 -1.9337 36 1 3.9185 3.3858 -1.5165 37 1 3.1948 5.6225 -0.4657 38 1 4.4489 6.7601 0.0833 39 1 4.1468 6.5398 -1.6573 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929773166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:51 Heat of formation + Delta-G solvation = 114.832094 kcal Electronic energy + Delta-G solvation = -19176.176886 eV Core-core repulsion = 16350.001732 eV Total energy + Delta-G solvation = -2826.175154 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.03963 -37.76906 -35.32682 -32.79054 -31.69129 -30.78784 -30.36526 -27.41030 -26.32586 -24.69123 -24.62406 -21.92446 -21.60061 -20.73698 -18.69123 -17.12444 -16.36088 -16.13275 -15.33072 -14.88977 -14.52713 -14.32268 -13.97330 -13.71131 -12.97665 -12.76905 -12.55908 -12.48581 -12.08253 -11.94858 -11.81924 -11.50844 -11.30140 -10.94235 -10.86742 -10.69101 -10.62422 -10.39045 -10.26446 -9.93808 -9.74459 -9.31244 -9.20872 -8.72062 -8.38861 -7.11946 -5.98897 -3.99255 1.84995 2.47652 2.84445 3.36349 3.39986 3.43617 4.29028 4.46670 4.57872 4.68317 4.83055 5.09843 5.23602 5.24413 5.36325 5.39984 5.45235 5.69381 5.82398 5.86983 5.97372 6.13106 6.22512 6.34770 6.42216 6.50998 6.56522 6.68394 6.73523 6.81460 7.05440 7.13729 7.38241 7.47159 7.87642 8.15468 8.31855 8.61901 8.80179 9.08746 9.64460 11.11784 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031840 B = 0.005120 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.179352 B = 5467.157192 C = 5700.033977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.300 5.300 4 C -0.042 4.042 5 C 0.009 3.991 6 C 0.121 3.879 7 N -0.526 5.526 8 C 0.194 3.806 9 C -0.504 4.504 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.085 3.915 18 C -0.148 4.148 19 C -0.180 4.180 20 N -0.256 5.256 21 N -0.099 5.099 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.187 0.813 28 H 0.080 0.920 29 H 0.059 0.941 30 H -0.007 1.007 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 -10.254 -2.848 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.095 5.095 4 C -0.192 4.192 5 C -0.128 4.128 6 C -0.009 4.009 7 N -0.251 5.251 8 C 0.069 3.931 9 C -0.543 4.543 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.024 4.024 18 C -0.206 4.206 19 C -0.239 4.239 20 N -0.124 5.124 21 N -0.078 5.078 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.204 0.796 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.011 0.989 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.646 -10.350 -4.025 18.380 hybrid contribution 1.473 0.219 0.825 1.702 sum -13.173 -10.131 -3.200 16.924 Atomic orbital electron populations 1.22064 0.93041 1.03329 1.03936 1.21981 0.96555 0.77127 1.04993 1.47305 1.31113 1.11679 1.19366 1.23365 0.99846 0.95742 1.00237 1.22057 1.00400 0.94880 0.95502 1.20484 0.89550 0.94550 0.96335 1.62237 1.03441 1.55530 1.03878 1.19754 0.89249 0.92390 0.91718 1.21122 0.90347 1.34024 1.08767 0.91970 1.24956 0.99194 0.95339 0.95012 1.69943 1.30343 1.37117 1.16514 0.86592 0.83792 0.78405 0.78804 1.20300 1.21412 1.20263 1.21535 0.98818 0.92064 0.89971 1.22134 1.02070 0.99411 0.97026 1.22463 1.01210 0.99328 1.00867 1.74932 1.08482 1.15883 1.13137 1.78184 1.21429 0.93188 1.15013 0.91835 0.90763 0.90221 0.88659 0.87893 0.79591 0.90118 0.92300 0.98881 0.95253 0.92942 0.89665 0.94242 0.93835 0.90940 0.91131 0.93317 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.04 37.16 0.37 -0.73 16 2 C 0.11 0.88 7.17 -4.04 -0.03 0.85 16 3 N -0.30 -3.84 3.44 -61.26 -0.21 -4.05 16 4 C -0.04 -0.58 11.50 -17.05 -0.20 -0.78 16 5 C 0.01 0.15 5.21 -82.78 -0.43 -0.28 16 6 C 0.12 2.23 5.06 -4.98 -0.03 2.21 16 7 N -0.53 -11.47 4.33 -229.52 -0.99 -12.46 16 8 C 0.19 4.98 4.66 -4.98 -0.02 4.96 16 9 C -0.50 -14.13 8.13 -34.44 -0.28 -14.41 16 10 H 0.06 1.75 7.49 -52.49 -0.39 1.36 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 13 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 C 0.08 1.78 2.61 -67.71 -0.18 1.60 16 18 C -0.15 -2.90 9.30 37.16 0.35 -2.55 16 19 C -0.18 -3.39 7.92 37.16 0.29 -3.10 16 20 N -0.26 -4.55 8.67 33.29 0.29 -4.26 16 21 N -0.10 -1.59 12.92 60.35 0.78 -0.81 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.19 2.05 8.06 -52.48 -0.42 1.62 16 28 H 0.08 1.40 7.75 -51.93 -0.40 0.99 16 29 H 0.06 1.09 5.26 -51.93 -0.27 0.82 16 30 H -0.01 -0.18 7.79 -51.93 -0.40 -0.59 16 31 H 0.03 0.79 7.83 -51.93 -0.41 0.38 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.09 2.00 6.64 -51.93 -0.34 1.65 16 34 H 0.04 0.71 8.13 -51.92 -0.42 0.28 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.42 3.58 -51.93 -0.19 1.23 16 37 H 0.07 1.30 4.93 -51.93 -0.26 1.04 16 38 H 0.05 0.94 7.71 -51.92 -0.40 0.54 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -32.12 310.92 -5.98 -38.10 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.00 Total: -1.40 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -0.25 Total: -10.73 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.60 Total: -47.40 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.12 -5.98 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929773166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.937 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds