Wall clock time and date at job start Sun Mar 29 2020 22:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 O 1.42901 * 109.46864 * 2 1 4 4 C 1.42898 * 113.99644 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.76676 * 333.20504 * 4 3 2 6 6 C 1.55147 * 110.70273 * 96.40229 * 4 3 2 7 7 C 1.54904 * 101.65282 * 154.03221 * 6 4 3 8 8 N 1.47845 * 104.79725 * 322.93580 * 7 6 4 9 9 C 1.46898 * 111.00210 * 146.36079 * 8 7 6 10 10 C 1.53001 * 109.47267 * 173.41891 * 9 8 7 11 11 H 1.09002 * 109.46771 * 56.13676 * 10 9 8 12 12 C 1.47199 * 109.47096 * 296.13901 * 10 9 8 13 13 N 7.94684 * 120.11441 * 6.22710 * 2 1 3 14 14 C 1.52997 * 109.47305 * 176.13822 * 10 9 8 15 15 C 1.50699 * 109.47142 * 185.00230 * 14 10 9 16 16 H 1.07998 * 120.00017 * 359.97438 * 15 14 10 17 17 C 1.37878 * 119.99715 * 179.97438 * 15 14 10 18 18 N 1.31517 * 119.99621 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00294 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46983 * 90.00169 * 19 17 15 21 21 H 1.48497 * 109.46790 * 209.99889 * 19 17 15 22 22 H 1.48498 * 109.46751 * 329.99887 * 19 17 15 23 23 C 1.47441 * 108.56891 * 24.08864 * 8 7 6 24 24 H 1.08996 * 109.46649 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46588 * 299.99612 * 1 2 3 26 26 H 1.08991 * 109.47081 * 59.99752 * 1 2 3 27 27 H 1.08994 * 109.46588 * 240.00388 * 2 1 3 28 28 H 1.08991 * 109.47081 * 120.00248 * 2 1 3 29 29 H 1.09001 * 110.98658 * 35.94589 * 6 4 3 30 30 H 1.08995 * 111.02588 * 272.14300 * 6 4 3 31 31 H 1.09002 * 110.37883 * 204.10431 * 7 6 4 32 32 H 1.09003 * 110.37116 * 81.75619 * 7 6 4 33 33 H 1.08999 * 109.46994 * 293.42024 * 9 8 7 34 34 H 1.09005 * 109.47200 * 53.42216 * 9 8 7 35 35 H 1.09007 * 109.46877 * 304.99949 * 14 10 9 36 36 H 1.08999 * 109.47374 * 64.99563 * 14 10 9 37 37 H 0.97005 * 119.99569 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.88623 * 118.41972 * 23 8 7 39 39 H 1.08994 * 109.88999 * 239.60649 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8878 0.5838 0.4603 6 6 3.9655 1.6645 -1.4415 7 6 5.2971 2.4110 -1.1786 8 7 5.0089 3.3072 -0.0386 9 6 6.1914 3.4658 0.8185 10 6 5.9078 4.5219 1.8885 11 1 5.0178 4.2394 2.4509 12 6 5.6872 5.8267 1.2438 13 7 5.5173 6.8337 0.7456 14 6 7.1027 4.6184 2.8392 15 6 6.7753 5.5679 3.9628 16 1 5.8116 6.0543 3.9952 17 6 7.7061 5.8157 4.9492 18 7 7.4206 6.6447 5.9294 19 14 9.3728 4.9738 4.8935 20 1 10.3270 5.8154 4.1277 21 1 9.8787 4.7856 6.2769 22 1 9.2375 3.6514 4.2317 23 6 3.8758 2.7495 0.7223 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2824 2.2793 -2.0276 30 1 4.1445 0.7075 -1.9315 31 1 5.5858 2.9921 -2.0545 32 1 6.0833 1.7033 -0.9155 33 1 6.4222 2.5149 1.2986 34 1 7.0401 3.7820 0.2118 35 1 7.3214 3.6323 3.2491 36 1 7.9719 4.9863 2.2942 37 1 8.0757 6.8193 6.6233 38 1 4.1914 2.5153 1.7390 39 1 3.0543 3.4656 0.7423 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932979649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:20 Heat of formation + Delta-G solvation = -25.449530 kcal Electronic energy + Delta-G solvation = -18419.699994 eV Core-core repulsion = 15555.149021 eV Total energy + Delta-G solvation = -2864.550973 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.63506 -37.61513 -36.03541 -33.82876 -32.47828 -31.47241 -30.08386 -28.45436 -26.77066 -23.42070 -23.07442 -21.65015 -21.11829 -20.72334 -17.32730 -16.91977 -16.63308 -16.20089 -15.69331 -14.92332 -14.44322 -14.07590 -13.97927 -13.48398 -13.39650 -12.86274 -12.74218 -12.63513 -12.39403 -12.26315 -11.96454 -11.79182 -11.57781 -11.42474 -11.33456 -11.27557 -11.13785 -10.82407 -10.75893 -10.25697 -9.97118 -9.74903 -9.65536 -9.31867 -8.61247 -8.28160 -6.10006 -4.10625 3.26755 3.33763 3.34652 3.39940 3.73067 3.82086 3.98595 4.38332 4.47701 4.58770 4.79233 4.80784 4.83567 5.00418 5.10428 5.11782 5.24343 5.25025 5.40430 5.47874 5.49916 5.62201 5.63985 5.66746 5.83120 5.84397 5.89369 5.96974 6.04707 6.21997 6.29347 6.92778 6.96198 7.04628 7.10922 7.11825 7.64107 8.41697 8.58819 8.94091 9.49675 11.03133 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.004471 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.339632 B = 6260.845357 C = 6472.795331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.374 6.374 4 C 0.069 3.931 5 H 0.069 0.931 6 C -0.149 4.149 7 C 0.044 3.956 8 N -0.526 5.526 9 C 0.054 3.946 10 C 0.020 3.980 11 H 0.105 0.895 12 C 0.253 3.747 13 N -0.471 5.471 14 C -0.005 4.005 15 C -0.527 4.527 16 H 0.075 0.925 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.040 3.960 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.021 0.979 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -17.614 -12.567 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.292 6.292 4 C 0.010 3.990 5 H 0.087 0.913 6 C -0.188 4.188 7 C -0.083 4.083 8 N -0.251 5.251 9 C -0.075 4.075 10 C -0.002 4.002 11 H 0.123 0.877 12 C -0.064 4.064 13 N -0.147 5.147 14 C -0.044 4.044 15 C -0.565 4.565 16 H 0.093 0.907 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.087 4.087 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.723 -15.355 -13.330 21.751 hybrid contribution 1.409 -1.731 0.673 2.331 sum -6.314 -17.087 -12.657 22.182 Atomic orbital electron populations 1.21744 0.93765 1.02110 1.03282 1.22499 0.95634 0.84020 0.99867 1.87955 1.20304 1.26106 1.94874 1.23384 0.81428 0.98570 0.95621 0.91343 1.23178 0.97516 1.00633 0.97432 1.22946 0.96187 0.94215 0.94998 1.63663 1.05954 1.46484 1.09018 1.22476 0.92679 0.98027 0.94338 1.19001 1.03108 0.84097 0.93986 0.87709 1.28659 0.91944 0.94134 0.91640 1.81000 1.10066 1.12098 1.11556 1.19647 0.91963 0.98631 0.94175 1.21030 1.03113 1.25866 1.06521 0.90739 1.24993 0.98374 0.94653 0.95086 1.69911 1.35508 1.35316 1.12743 0.86816 0.84620 0.80663 0.77426 1.20224 1.21269 1.18796 1.22940 0.94891 0.94570 0.96341 0.91252 0.91675 0.91879 0.93626 0.93372 0.89692 0.91047 0.89945 0.93257 0.92736 0.89975 0.94597 0.96058 0.92571 0.91093 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.48 6.50 37.16 0.24 0.73 16 3 O -0.37 -4.33 10.07 -35.23 -0.35 -4.68 16 4 C 0.07 0.74 3.44 -24.91 -0.09 0.65 16 5 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 6 C -0.15 -1.46 6.80 -24.59 -0.17 -1.63 16 7 C 0.04 0.47 6.71 -2.30 -0.02 0.45 16 8 N -0.53 -7.07 4.86 -231.25 -1.12 -8.19 16 9 C 0.05 0.76 3.90 -3.82 -0.01 0.74 16 10 C 0.02 0.36 2.12 -93.41 -0.20 0.16 16 11 H 0.11 1.83 6.78 -51.93 -0.35 1.48 16 12 C 0.25 5.38 13.64 -20.75 -0.28 5.10 16 13 N -0.47 -10.98 18.54 42.16 0.78 -10.20 16 14 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 15 C -0.53 -14.29 9.15 -34.44 -0.32 -14.61 16 16 H 0.07 2.23 7.84 -52.49 -0.41 1.81 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 19 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 23 C 0.04 0.51 5.89 -2.84 -0.02 0.50 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.47 7.81 -51.93 -0.41 0.06 16 33 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 35 H 0.04 0.72 7.20 -51.92 -0.37 0.35 16 36 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 0.87 6.73 -51.93 -0.35 0.52 16 39 H 0.09 1.28 8.06 -51.93 -0.42 0.87 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -31.88 322.46 -6.90 -38.78 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.50 Total: -3.20 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.67 Total: -6.95 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.43 Total: -44.77 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.35 Total: -4.68 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.88 -6.90 -38.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932979649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.334 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds