Wall clock time and date at job start Sun Mar 29 2020 22:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 O 1.42901 * 109.46864 * 2 1 4 4 C 1.42898 * 113.99644 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.76676 * 333.20504 * 4 3 2 6 6 C 1.55147 * 110.70273 * 96.40229 * 4 3 2 7 7 C 1.54904 * 101.65282 * 154.03221 * 6 4 3 8 8 N 1.47845 * 104.79725 * 322.93580 * 7 6 4 9 9 C 1.46898 * 111.00210 * 146.36079 * 8 7 6 10 10 C 1.53001 * 109.47267 * 173.41891 * 9 8 7 11 11 H 1.09002 * 109.46771 * 56.13676 * 10 9 8 12 12 C 1.47199 * 109.47096 * 296.13901 * 10 9 8 13 13 N 7.94684 * 120.11441 * 6.22710 * 2 1 3 14 14 C 1.52997 * 109.47305 * 176.13822 * 10 9 8 15 15 C 1.50699 * 109.47142 * 185.00230 * 14 10 9 16 16 H 1.07998 * 120.00017 * 359.97438 * 15 14 10 17 17 C 1.37878 * 119.99715 * 179.97438 * 15 14 10 18 18 N 1.31517 * 119.99621 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00294 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46983 * 90.00169 * 19 17 15 21 21 H 1.48497 * 109.46790 * 209.99889 * 19 17 15 22 22 H 1.48498 * 109.46751 * 329.99887 * 19 17 15 23 23 C 1.47441 * 108.56891 * 24.08864 * 8 7 6 24 24 H 1.08996 * 109.46649 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46588 * 299.99612 * 1 2 3 26 26 H 1.08991 * 109.47081 * 59.99752 * 1 2 3 27 27 H 1.08994 * 109.46588 * 240.00388 * 2 1 3 28 28 H 1.08991 * 109.47081 * 120.00248 * 2 1 3 29 29 H 1.09001 * 110.98658 * 35.94589 * 6 4 3 30 30 H 1.08995 * 111.02588 * 272.14300 * 6 4 3 31 31 H 1.09002 * 110.37883 * 204.10431 * 7 6 4 32 32 H 1.09003 * 110.37116 * 81.75619 * 7 6 4 33 33 H 1.08999 * 109.46994 * 293.42024 * 9 8 7 34 34 H 1.09005 * 109.47200 * 53.42216 * 9 8 7 35 35 H 1.09007 * 109.46877 * 304.99949 * 14 10 9 36 36 H 1.08999 * 109.47374 * 64.99563 * 14 10 9 37 37 H 0.97005 * 119.99569 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.88623 * 118.41972 * 23 8 7 39 39 H 1.08994 * 109.88999 * 239.60649 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8878 0.5838 0.4603 6 6 3.9655 1.6645 -1.4415 7 6 5.2971 2.4110 -1.1786 8 7 5.0089 3.3072 -0.0386 9 6 6.1914 3.4658 0.8185 10 6 5.9078 4.5219 1.8885 11 1 5.0178 4.2394 2.4509 12 6 5.6872 5.8267 1.2438 13 7 5.5173 6.8337 0.7456 14 6 7.1027 4.6184 2.8392 15 6 6.7753 5.5679 3.9628 16 1 5.8116 6.0543 3.9952 17 6 7.7061 5.8157 4.9492 18 7 7.4206 6.6447 5.9294 19 14 9.3728 4.9738 4.8935 20 1 10.3270 5.8154 4.1277 21 1 9.8787 4.7856 6.2769 22 1 9.2375 3.6514 4.2317 23 6 3.8758 2.7495 0.7223 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2824 2.2793 -2.0276 30 1 4.1445 0.7075 -1.9315 31 1 5.5858 2.9921 -2.0545 32 1 6.0833 1.7033 -0.9155 33 1 6.4222 2.5149 1.2986 34 1 7.0401 3.7820 0.2118 35 1 7.3214 3.6323 3.2491 36 1 7.9719 4.9863 2.2942 37 1 8.0757 6.8193 6.6233 38 1 4.1914 2.5153 1.7390 39 1 3.0543 3.4656 0.7423 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932979649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:19 Heat of formation + Delta-G solvation = -47.369866 kcal Electronic energy + Delta-G solvation = -18420.650531 eV Core-core repulsion = 15555.149021 eV Total energy + Delta-G solvation = -2865.501510 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54881 -38.67369 -37.42340 -35.57019 -34.16756 -32.39275 -31.21515 -29.33186 -28.35952 -24.70586 -23.70493 -23.30979 -22.07376 -21.71495 -18.92533 -18.22563 -18.00068 -17.25261 -16.43522 -16.19161 -15.80057 -15.35207 -15.11572 -14.94577 -14.43882 -14.31388 -13.83333 -13.78726 -13.68882 -13.32534 -13.21846 -13.13352 -12.91120 -12.65303 -12.46535 -12.38346 -12.15825 -11.98510 -11.81528 -11.69518 -11.57696 -11.48680 -11.26409 -10.73091 -10.40329 -9.22589 -8.23889 -6.30013 1.44104 1.45704 1.56651 2.04628 2.12225 2.41982 2.65280 3.03949 3.12713 3.32110 3.67103 3.75458 4.04504 4.15031 4.22563 4.31144 4.35571 4.40251 4.45379 4.53573 4.64144 4.65868 4.79886 4.85438 4.89323 4.95321 5.01349 5.07467 5.09611 5.19603 5.24446 5.31098 5.44021 5.63925 6.03203 6.09399 6.27696 6.37446 6.77492 6.90450 7.34366 8.93245 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.004471 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.339632 B = 6260.845357 C = 6472.795331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.400 6.400 4 C 0.072 3.928 5 H 0.089 0.911 6 C -0.142 4.142 7 C 0.045 3.955 8 N -0.549 5.549 9 C 0.064 3.936 10 C 0.024 3.976 11 H 0.108 0.892 12 C 0.263 3.737 13 N -0.517 5.517 14 C -0.002 4.002 15 C -0.533 4.533 16 H 0.025 0.975 17 C 0.002 3.998 18 N -0.955 5.955 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.220 1.220 23 C 0.038 3.962 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.265 0.735 38 H 0.075 0.925 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 -21.172 -13.898 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.320 6.320 4 C 0.013 3.987 5 H 0.107 0.893 6 C -0.180 4.180 7 C -0.082 4.082 8 N -0.275 5.275 9 C -0.065 4.065 10 C 0.002 3.998 11 H 0.126 0.874 12 C -0.053 4.053 13 N -0.194 5.194 14 C -0.041 4.041 15 C -0.571 4.571 16 H 0.044 0.956 17 C -0.195 4.195 18 N -0.596 5.596 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.142 1.142 23 C -0.090 4.090 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.231 -18.941 -14.694 24.769 hybrid contribution 0.797 -0.557 1.096 1.465 sum -5.433 -19.498 -13.598 24.384 Atomic orbital electron populations 1.21775 0.93353 1.03292 1.02452 1.22705 0.96080 0.82867 1.00964 1.87934 1.20892 1.28097 1.95030 1.23378 0.81301 0.98045 0.95946 0.89272 1.23131 0.96600 1.01435 0.96847 1.23007 0.97219 0.94217 0.93735 1.63534 1.05881 1.48296 1.09751 1.22364 0.93080 0.97554 0.93471 1.19137 1.02029 0.83811 0.94851 0.87410 1.29431 0.90720 0.94478 0.90647 1.80991 1.11481 1.13530 1.13442 1.19596 0.93302 0.98361 0.92825 1.21403 1.01103 1.26224 1.08333 0.95623 1.26078 1.03360 0.95510 0.94522 1.70102 1.37363 1.37935 1.14187 0.85671 0.78219 0.81254 0.77598 1.20209 1.21572 1.14244 1.22877 0.94071 0.95077 0.96953 0.89064 0.92724 0.92493 0.92186 0.92470 0.91396 0.88487 0.90129 0.90952 0.89648 0.89196 0.91540 0.95357 0.92657 0.90709 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.99 0.74 -1.30 16 2 C 0.05 0.75 6.50 71.99 0.47 1.22 16 3 O -0.40 -8.75 10.07 -148.98 -1.50 -10.25 16 4 C 0.07 1.37 3.44 31.78 0.11 1.48 16 5 H 0.09 1.32 7.83 -2.39 -0.02 1.31 16 6 C -0.14 -2.39 6.80 31.98 0.22 -2.17 16 7 C 0.04 0.82 6.71 86.77 0.58 1.40 16 8 N -0.55 -13.56 4.86 -885.55 -4.30 -17.86 16 9 C 0.06 1.59 3.90 86.30 0.34 1.93 16 10 C 0.02 0.82 2.12 -12.60 -0.03 0.79 16 11 H 0.11 3.69 6.78 -2.39 -0.02 3.68 16 12 C 0.26 11.23 13.64 89.44 1.22 12.45 16 13 N -0.52 -24.63 18.54 20.01 0.37 -24.26 16 14 C 0.00 -0.08 3.49 29.85 0.10 0.03 16 15 C -0.53 -29.10 9.15 25.60 0.23 -28.87 16 16 H 0.03 1.60 7.84 -2.91 -0.02 1.57 16 17 C 0.00 0.10 5.47 84.65 0.46 0.56 16 18 N -0.96 -59.64 13.96 21.45 0.30 -59.34 16 19 Si 0.95 41.28 27.47 68.60 1.88 43.16 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.22 -8.00 6.54 99.48 0.65 -7.35 16 23 C 0.04 0.92 5.89 86.65 0.51 1.43 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.75 8.11 -2.39 -0.02 0.73 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.01 7.81 -2.39 -0.02 0.99 16 33 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 34 H 0.09 2.12 8.12 -2.38 -0.02 2.10 16 35 H 0.07 2.35 7.20 -2.38 -0.02 2.33 16 36 H 0.03 1.12 7.57 -2.39 -0.02 1.11 16 37 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 38 H 0.07 1.69 6.73 -2.39 -0.02 1.67 16 39 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 Total: -1.00 -72.14 322.46 2.66 -69.48 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.95 Total: 10.11 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.96 Total: -11.05 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -3.63 Total: -101.46 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.50 Total: -10.25 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.88 Total: 43.16 kcal Total: -72.14 2.66 -69.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932979649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.109 kcal (2) G-P(sol) polarization free energy of solvation -72.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds