Wall clock time and date at job start Sun Mar 29 2020 23:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00122 * 2 1 4 4 H 1.08997 * 112.90341 * 18.75396 * 3 2 1 5 5 C 1.53774 * 113.61440 * 247.49808 * 3 2 1 6 6 C 1.53786 * 87.08092 * 220.01620 * 5 3 2 7 7 C 1.53779 * 113.61485 * 149.99737 * 3 2 1 8 8 H 1.08999 * 113.61377 * 25.35076 * 7 3 2 9 9 N 1.46898 * 113.61887 * 254.53312 * 7 3 2 10 10 C 1.46903 * 111.00012 * 56.04726 * 9 7 3 11 11 C 1.46904 * 111.00418 * 180.02562 * 9 7 3 12 12 C 1.53000 * 109.46833 * 76.23930 * 11 9 7 13 13 H 1.09000 * 109.46948 * 302.89167 * 12 11 9 14 14 C 1.47198 * 109.47187 * 62.89373 * 12 11 9 15 15 N 6.67280 * 116.33286 * 23.99844 * 2 1 3 16 16 C 1.52997 * 109.46942 * 182.89289 * 12 11 9 17 17 C 1.50701 * 109.47273 * 174.99636 * 16 12 11 18 18 H 1.08000 * 119.99792 * 0.02562 * 17 16 12 19 19 C 1.37877 * 120.00000 * 179.97438 * 17 16 12 20 20 N 1.31514 * 120.00196 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47352 * 270.00610 * 21 19 17 23 23 H 1.48510 * 109.46813 * 30.00170 * 21 19 17 24 24 H 1.48498 * 109.47223 * 150.00114 * 21 19 17 25 25 H 1.08998 * 109.47406 * 59.99789 * 1 2 3 26 26 H 1.08995 * 109.47236 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47190 * 300.00007 * 1 2 3 28 28 H 1.08996 * 113.61854 * 334.56187 * 5 3 2 29 29 H 1.08995 * 113.61355 * 105.39060 * 5 3 2 30 30 H 1.09001 * 113.61558 * 270.88751 * 6 5 3 31 31 H 1.08997 * 113.61358 * 139.97873 * 6 5 3 32 32 H 1.08999 * 109.47094 * 188.46926 * 10 9 7 33 33 H 1.09008 * 109.47040 * 308.46692 * 10 9 7 34 34 H 1.08993 * 109.47387 * 68.46669 * 10 9 7 35 35 H 1.08997 * 109.46834 * 316.24157 * 11 9 7 36 36 H 1.08992 * 109.47051 * 196.23967 * 11 9 7 37 37 H 1.09000 * 109.47239 * 54.99765 * 16 12 11 38 38 H 1.09001 * 109.47210 * 294.99990 * 16 12 11 39 39 H 0.96997 * 120.00441 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0797 0.3228 5 6 2.7534 1.6489 -1.3017 6 6 3.8227 2.3182 -0.4221 7 6 3.3755 1.3719 0.7046 8 1 3.9081 0.4210 0.7151 9 7 3.3255 2.0123 2.0257 10 6 2.3542 1.3409 2.8997 11 6 4.6570 2.0456 2.6454 12 6 5.4965 3.1449 1.9914 13 1 5.5538 2.9678 0.9174 14 6 4.8706 4.4538 2.2402 15 7 4.3889 5.4634 2.4323 16 6 6.9059 3.1322 2.5864 17 6 7.7678 4.1310 1.8579 18 1 7.3516 4.7166 1.0515 19 6 9.0872 4.2980 2.2217 20 7 9.5937 3.5853 3.2040 21 14 10.1552 5.5366 1.3191 22 1 10.8156 4.8735 0.1661 23 1 9.3099 6.6551 0.8293 24 1 11.1891 6.0659 2.2444 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1167 0.7741 -1.8409 29 1 2.2134 2.3466 -1.9417 30 1 3.6222 3.3694 -0.2148 31 1 4.8425 2.1400 -0.7630 32 1 2.2262 1.9209 3.8137 33 1 1.3972 1.2592 2.3842 34 1 2.7183 0.3445 3.1497 35 1 5.1471 1.0822 2.5053 36 1 4.5566 2.2506 3.7112 37 1 7.3359 2.1362 2.4810 38 1 6.8568 3.3968 3.6427 39 1 10.5220 3.7025 3.4597 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934124983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:31 Heat of formation + Delta-G solvation = -1.645351 kcal Electronic energy + Delta-G solvation = -18905.074583 eV Core-core repulsion = 16041.555837 eV Total energy + Delta-G solvation = -2863.518746 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.94880 -37.35999 -35.91997 -34.66009 -33.46715 -31.58590 -27.55327 -27.05929 -25.97056 -24.32380 -24.15103 -21.80396 -21.49232 -19.52031 -17.20593 -16.97536 -16.35885 -15.67513 -15.37409 -14.77274 -14.70875 -14.31578 -14.24594 -13.17682 -13.04613 -12.95293 -12.70960 -12.41208 -12.13106 -12.03954 -11.88836 -11.57534 -11.47853 -11.20528 -11.11329 -11.04341 -10.75744 -10.58692 -10.54431 -10.38355 -10.02115 -9.61303 -9.43100 -9.19793 -8.43570 -8.21805 -6.07490 -4.10431 3.30458 3.37410 3.42119 3.59065 3.78976 3.89455 4.16014 4.43422 4.53928 4.59180 4.85080 4.91420 4.98671 5.13633 5.20078 5.29602 5.30717 5.44108 5.48296 5.51856 5.63518 5.72906 5.80386 5.83981 5.95743 6.03445 6.08998 6.20754 6.32051 6.44130 6.54436 7.03092 7.17267 7.29396 7.45790 7.56397 7.87918 8.26004 8.63604 8.94405 9.54918 11.03506 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032013 B = 0.004921 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.438361 B = 5689.110835 C = 5894.983455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.068 3.932 4 H 0.093 0.907 5 C -0.155 4.155 6 C -0.129 4.129 7 C 0.061 3.939 8 H 0.078 0.922 9 N -0.537 5.537 10 C 0.029 3.971 11 C 0.062 3.938 12 C 0.007 3.993 13 H 0.104 0.896 14 C 0.260 3.740 15 N -0.484 5.484 16 C 0.030 3.970 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.279 1.279 23 H -0.273 1.273 24 H -0.286 1.286 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.025 0.975 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 -8.916 -5.803 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.010 3.990 4 H 0.111 0.889 5 C -0.193 4.193 6 C -0.167 4.167 7 C -0.048 4.048 8 H 0.096 0.904 9 N -0.261 5.261 10 C -0.119 4.119 11 C -0.066 4.066 12 C -0.015 4.015 13 H 0.122 0.878 14 C -0.057 4.057 15 N -0.161 5.161 16 C -0.008 4.008 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.205 1.205 23 H -0.198 1.198 24 H -0.212 1.212 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.744 -7.108 -5.462 18.117 hybrid contribution 0.951 -0.324 -0.333 1.058 sum -14.793 -7.432 -5.795 17.540 Atomic orbital electron populations 1.22750 0.81587 1.02412 0.99834 1.87946 1.19319 1.27964 1.94585 1.23960 0.93825 0.84869 0.96326 0.88912 1.23324 0.98288 1.01029 0.96686 1.22885 0.99289 0.99769 0.94709 1.23569 0.95584 0.96741 0.88890 0.90409 1.62305 1.08373 1.52769 1.02660 1.22292 0.95755 0.96863 0.97001 1.22259 0.87461 0.98040 0.98879 1.19326 0.96142 0.83281 1.02712 0.87827 1.28826 0.90730 0.94194 0.91962 1.80932 1.12487 1.12497 1.10166 1.19178 0.86356 0.98598 0.96701 1.21138 0.95407 1.21781 1.17919 0.92508 1.24946 0.98035 0.95951 0.95002 1.69937 1.14525 1.40461 1.28171 0.86608 0.80266 0.81713 0.79607 1.20479 1.19832 1.21177 0.94186 0.89956 0.94161 0.89321 0.91096 0.88919 0.89848 0.91562 0.92045 0.95426 0.92553 0.90399 0.94526 0.95679 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.39 10.71 -35.23 -0.38 -4.77 16 3 C 0.07 0.78 2.68 -25.92 -0.07 0.71 16 4 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 5 C -0.16 -1.67 7.91 -25.92 -0.21 -1.87 16 6 C -0.13 -1.61 5.64 -25.92 -0.15 -1.76 16 7 C 0.06 0.78 2.99 -66.90 -0.20 0.58 16 8 H 0.08 1.02 7.98 -51.93 -0.41 0.61 16 9 N -0.54 -7.48 4.33 -233.91 -1.01 -8.50 16 10 C 0.03 0.35 9.37 60.07 0.56 0.91 16 11 C 0.06 0.96 4.39 -3.82 -0.02 0.94 16 12 C 0.01 0.14 2.03 -93.41 -0.19 -0.05 16 13 H 0.10 1.84 5.34 -51.93 -0.28 1.56 16 14 C 0.26 5.47 13.61 -20.79 -0.28 5.19 16 15 N -0.48 -11.03 18.53 42.12 0.78 -10.24 16 16 C 0.03 0.71 4.42 -27.88 -0.12 0.58 16 17 C -0.52 -14.00 8.60 -34.44 -0.30 -14.30 16 18 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 21 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.08 1.04 7.56 -51.93 -0.39 0.65 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.68 6.77 -51.92 -0.35 0.33 16 34 H 0.03 0.32 8.13 -51.93 -0.42 -0.11 16 35 H 0.06 0.82 7.88 -51.93 -0.41 0.41 16 36 H 0.08 1.20 7.93 -51.93 -0.41 0.79 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -30.21 324.09 -6.39 -36.60 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.41 Total: -3.31 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 0.03 Total: -6.08 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.50 Total: -43.64 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.38 Total: -4.77 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.21 -6.39 -36.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934124983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.955 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds