Wall clock time and date at job start Sun Mar 29 2020 23:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00122 * 2 1 4 4 H 1.08997 * 112.90341 * 18.75396 * 3 2 1 5 5 C 1.53774 * 113.61440 * 247.49808 * 3 2 1 6 6 C 1.53786 * 87.08092 * 220.01620 * 5 3 2 7 7 C 1.53779 * 113.61485 * 149.99737 * 3 2 1 8 8 H 1.08999 * 113.61377 * 25.35076 * 7 3 2 9 9 N 1.46898 * 113.61887 * 254.53312 * 7 3 2 10 10 C 1.46903 * 111.00012 * 56.04726 * 9 7 3 11 11 C 1.46904 * 111.00418 * 180.02562 * 9 7 3 12 12 C 1.53000 * 109.46833 * 76.23930 * 11 9 7 13 13 H 1.09000 * 109.46948 * 302.89167 * 12 11 9 14 14 C 1.47198 * 109.47187 * 62.89373 * 12 11 9 15 15 N 6.67280 * 116.33286 * 23.99844 * 2 1 3 16 16 C 1.52997 * 109.46942 * 182.89289 * 12 11 9 17 17 C 1.50701 * 109.47273 * 174.99636 * 16 12 11 18 18 H 1.08000 * 119.99792 * 0.02562 * 17 16 12 19 19 C 1.37877 * 120.00000 * 179.97438 * 17 16 12 20 20 N 1.31514 * 120.00196 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47352 * 270.00610 * 21 19 17 23 23 H 1.48510 * 109.46813 * 30.00170 * 21 19 17 24 24 H 1.48498 * 109.47223 * 150.00114 * 21 19 17 25 25 H 1.08998 * 109.47406 * 59.99789 * 1 2 3 26 26 H 1.08995 * 109.47236 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47190 * 300.00007 * 1 2 3 28 28 H 1.08996 * 113.61854 * 334.56187 * 5 3 2 29 29 H 1.08995 * 113.61355 * 105.39060 * 5 3 2 30 30 H 1.09001 * 113.61558 * 270.88751 * 6 5 3 31 31 H 1.08997 * 113.61358 * 139.97873 * 6 5 3 32 32 H 1.08999 * 109.47094 * 188.46926 * 10 9 7 33 33 H 1.09008 * 109.47040 * 308.46692 * 10 9 7 34 34 H 1.08993 * 109.47387 * 68.46669 * 10 9 7 35 35 H 1.08997 * 109.46834 * 316.24157 * 11 9 7 36 36 H 1.08992 * 109.47051 * 196.23967 * 11 9 7 37 37 H 1.09000 * 109.47239 * 54.99765 * 16 12 11 38 38 H 1.09001 * 109.47210 * 294.99990 * 16 12 11 39 39 H 0.96997 * 120.00441 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0797 0.3228 5 6 2.7534 1.6489 -1.3017 6 6 3.8227 2.3182 -0.4221 7 6 3.3755 1.3719 0.7046 8 1 3.9081 0.4210 0.7151 9 7 3.3255 2.0123 2.0257 10 6 2.3542 1.3409 2.8997 11 6 4.6570 2.0456 2.6454 12 6 5.4965 3.1449 1.9914 13 1 5.5538 2.9678 0.9174 14 6 4.8706 4.4538 2.2402 15 7 4.3889 5.4634 2.4323 16 6 6.9059 3.1322 2.5864 17 6 7.7678 4.1310 1.8579 18 1 7.3516 4.7166 1.0515 19 6 9.0872 4.2980 2.2217 20 7 9.5937 3.5853 3.2040 21 14 10.1552 5.5366 1.3191 22 1 10.8156 4.8735 0.1661 23 1 9.3099 6.6551 0.8293 24 1 11.1891 6.0659 2.2444 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1167 0.7741 -1.8409 29 1 2.2134 2.3466 -1.9417 30 1 3.6222 3.3694 -0.2148 31 1 4.8425 2.1400 -0.7630 32 1 2.2262 1.9209 3.8137 33 1 1.3972 1.2592 2.3842 34 1 2.7183 0.3445 3.1497 35 1 5.1471 1.0822 2.5053 36 1 4.5566 2.2506 3.7112 37 1 7.3359 2.1362 2.4810 38 1 6.8568 3.3968 3.6427 39 1 10.5220 3.7025 3.4597 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934124983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:30 Heat of formation + Delta-G solvation = -20.456113 kcal Electronic energy + Delta-G solvation = -18905.890279 eV Core-core repulsion = 16041.555837 eV Total energy + Delta-G solvation = -2864.334442 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92552 -38.60986 -37.19680 -35.89683 -35.27999 -33.34501 -29.10050 -27.84332 -27.06483 -25.72408 -25.11688 -23.59522 -22.68516 -20.48229 -18.60877 -18.35198 -17.90495 -16.81015 -16.60522 -16.21149 -15.72592 -15.57371 -15.44384 -14.65812 -14.27305 -14.21472 -13.97504 -13.80587 -13.71683 -13.26069 -13.03778 -12.96542 -12.85724 -12.65545 -12.52364 -12.44447 -12.32083 -12.13175 -11.79362 -11.56725 -11.45843 -11.12357 -11.06619 -10.53476 -10.39534 -9.30233 -8.18125 -6.26413 1.41195 1.43101 1.52432 2.09573 2.17133 2.42586 2.72005 3.15625 3.17717 3.38092 3.62306 3.69881 3.91672 4.00595 4.14740 4.32142 4.43691 4.54183 4.58283 4.62477 4.66365 4.74418 4.78123 4.84990 4.88032 4.94368 5.00341 5.03882 5.11705 5.27544 5.36487 5.47588 5.62486 5.80079 6.02962 6.11378 6.23365 6.38806 6.84560 6.95603 7.42207 8.92970 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032013 B = 0.004921 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.438361 B = 5689.110835 C = 5894.983455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.076 3.924 4 H 0.094 0.906 5 C -0.144 4.144 6 C -0.134 4.134 7 C 0.056 3.944 8 H 0.076 0.924 9 N -0.546 5.546 10 C 0.031 3.969 11 C 0.071 3.929 12 C 0.019 3.981 13 H 0.118 0.882 14 C 0.270 3.730 15 N -0.514 5.514 16 C 0.037 3.963 17 C -0.537 4.537 18 H 0.054 0.946 19 C 0.012 3.988 20 N -0.924 5.924 21 Si 0.948 3.052 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.285 1.285 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.000 1.000 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.004 -9.489 -6.850 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.018 3.982 4 H 0.112 0.888 5 C -0.183 4.183 6 C -0.172 4.172 7 C -0.053 4.053 8 H 0.094 0.906 9 N -0.270 5.270 10 C -0.117 4.117 11 C -0.058 4.058 12 C -0.002 4.002 13 H 0.135 0.865 14 C -0.046 4.046 15 N -0.192 5.192 16 C -0.002 4.002 17 C -0.575 4.575 18 H 0.072 0.928 19 C -0.187 4.187 20 N -0.564 5.564 21 Si 0.774 3.226 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.210 1.210 25 H 0.067 0.933 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.019 0.981 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.645 -7.689 -6.519 19.460 hybrid contribution 1.178 -0.173 -0.001 1.191 sum -15.467 -7.862 -6.519 18.535 Atomic orbital electron populations 1.22939 0.79976 1.03645 1.00574 1.87919 1.21105 1.27797 1.94662 1.23837 0.93207 0.85054 0.96130 0.88846 1.23267 0.97371 1.01146 0.96472 1.22847 0.99854 0.98927 0.95524 1.23651 0.96870 0.96506 0.88264 0.90581 1.62244 1.07594 1.53786 1.03411 1.22307 0.95628 0.96937 0.96780 1.22089 0.88207 0.97063 0.98472 1.19247 0.94106 0.83430 1.03455 0.86491 1.29230 0.90090 0.94284 0.91027 1.80927 1.13585 1.13399 1.11282 1.19004 0.88645 0.97437 0.95125 1.21529 0.96024 1.22126 1.17852 0.92778 1.25704 0.99476 0.97674 0.95800 1.70033 1.14928 1.41943 1.29511 0.85696 0.78592 0.79491 0.78819 1.19100 1.20023 1.21034 0.93296 0.88560 0.93572 0.88791 0.89924 0.90492 0.90025 0.91553 0.90990 0.94819 0.91329 0.90536 0.94885 0.98122 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.85 113.37 1.23 1.58 16 2 O -0.40 -8.27 10.71 -148.98 -1.60 -9.87 16 3 C 0.08 1.58 2.68 31.12 0.08 1.67 16 4 H 0.09 1.94 7.66 -2.39 -0.02 1.92 16 5 C -0.14 -2.83 7.91 31.12 0.25 -2.58 16 6 C -0.13 -3.19 5.64 31.12 0.18 -3.01 16 7 C 0.06 1.33 2.99 45.44 0.14 1.47 16 8 H 0.08 1.87 7.98 -2.39 -0.02 1.86 16 9 N -0.55 -14.46 4.33 -893.95 -3.87 -18.33 16 10 C 0.03 0.69 9.37 127.69 1.20 1.89 16 11 C 0.07 2.11 4.39 86.30 0.38 2.49 16 12 C 0.02 0.72 2.03 -12.60 -0.03 0.69 16 13 H 0.12 4.05 5.34 -2.39 -0.01 4.04 16 14 C 0.27 11.29 13.61 89.45 1.22 12.51 16 15 N -0.51 -23.36 18.53 19.99 0.37 -22.99 16 16 C 0.04 1.72 4.42 29.85 0.13 1.85 16 17 C -0.54 -28.68 8.60 25.60 0.22 -28.46 16 18 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 19 C 0.01 0.68 5.46 84.65 0.46 1.14 16 20 N -0.92 -53.35 13.29 21.45 0.28 -53.07 16 21 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 1.94 7.56 -2.39 -0.02 1.93 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.45 6.77 -2.38 -0.02 1.43 16 34 H 0.03 0.71 8.13 -2.39 -0.02 0.69 16 35 H 0.07 1.89 7.88 -2.39 -0.02 1.87 16 36 H 0.08 2.31 7.93 -2.39 -0.02 2.29 16 37 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -63.10 324.09 3.68 -59.42 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.01 Total: 8.01 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.45 Total: -8.75 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -3.22 Total: -94.39 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.60 Total: -9.87 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -63.10 3.68 -59.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934124983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.968 kcal (2) G-P(sol) polarization free energy of solvation -63.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds