Wall clock time and date at job start Sun Mar 29 2020 23:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36943 * 119.99682 * 2 1 4 4 H 1.08002 * 119.99718 * 203.29355 * 3 2 1 5 5 C 1.38815 * 119.99866 * 23.29680 * 3 2 1 6 6 N 1.31617 * 120.00394 * 13.96915 * 5 3 2 7 7 Si 1.86798 * 119.99601 * 193.96625 * 5 3 2 8 8 H 1.48503 * 109.47263 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46918 * 119.99920 * 7 5 3 10 10 H 1.48500 * 109.47315 * 239.99889 * 7 5 3 11 11 C 1.46500 * 120.00242 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.88396 * 182.42821 * 11 2 1 13 13 C 1.55156 * 111.00287 * 58.54719 * 11 2 1 14 14 C 1.54318 * 102.94502 * 206.38535 * 13 11 2 15 15 N 1.47029 * 107.26935 * 22.19523 * 14 13 11 16 16 C 1.34776 * 125.64864 * 181.02554 * 15 14 13 17 17 O 1.21285 * 120.00021 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00075 * 0.02562 * 16 15 14 19 19 C 1.53780 * 113.61536 * 180.02562 * 18 16 15 20 20 C 1.53774 * 87.17305 * 270.75685 * 19 18 16 21 21 C 1.53785 * 113.69299 * 82.46476 * 18 16 15 22 22 C 1.47424 * 108.70403 * 1.28497 * 15 14 13 23 23 H 1.09000 * 109.47327 * 275.16443 * 1 2 3 24 24 H 1.08995 * 109.47372 * 35.16598 * 1 2 3 25 25 H 1.09000 * 109.46884 * 155.16683 * 1 2 3 26 26 H 0.96993 * 120.00091 * 180.02562 * 6 5 3 27 27 H 1.09004 * 110.71849 * 88.02156 * 13 11 2 28 28 H 1.09004 * 110.87128 * 324.82334 * 13 11 2 29 29 H 1.09002 * 109.88509 * 262.77894 * 14 13 11 30 30 H 1.09000 * 110.01433 * 141.67988 * 14 13 11 31 31 H 1.09003 * 112.84995 * 311.20169 * 18 16 15 32 32 H 1.09002 * 113.61529 * 25.34710 * 19 18 16 33 33 H 1.09001 * 113.61693 * 156.16572 * 19 18 16 34 34 H 1.08996 * 113.61694 * 89.15717 * 20 19 18 35 35 H 1.08999 * 113.61898 * 220.06232 * 20 19 18 36 36 H 1.08997 * 113.61725 * 203.67660 * 21 18 16 37 37 H 1.08996 * 113.61257 * 334.49576 * 21 18 16 38 38 H 1.09003 * 110.36611 * 94.48040 * 22 15 14 39 39 H 1.08994 * 110.37011 * 216.81122 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1636 1.2241 -0.3699 5 6 1.5404 2.3391 0.4755 6 7 0.4269 2.2558 1.1723 7 14 2.3009 4.0092 0.1263 8 1 3.5407 3.8315 -0.6716 9 1 1.3369 4.8422 -0.6368 10 1 2.6292 4.6816 1.4090 11 6 2.1976 -1.2687 0.0006 12 1 3.2729 -1.0964 0.0436 13 6 1.8211 -2.1288 -1.2347 14 6 2.0906 -3.5684 -0.7487 15 7 2.0434 -3.5490 0.7207 16 6 2.2486 -4.6091 1.5273 17 8 2.1843 -4.4767 2.7311 18 6 2.5580 -5.9591 0.9333 19 6 2.7645 -7.0621 1.9847 20 6 4.2515 -6.6703 1.9927 21 6 4.0382 -6.1457 0.5604 22 6 1.7283 -2.1793 1.1656 23 1 -0.3634 0.0925 1.0235 24 1 -0.3634 0.8400 -0.5918 25 1 -0.3633 -0.9327 -0.4316 26 1 0.0010 3.0615 1.5042 27 1 2.4582 -1.8830 -2.0844 28 1 0.7699 -1.9991 -1.4924 29 1 3.0752 -3.8946 -1.0837 30 1 1.3257 -4.2420 -1.1352 31 1 1.8685 -6.2391 0.1367 32 1 2.2562 -6.8661 2.9288 33 1 2.5799 -8.0671 1.6054 34 1 4.4931 -5.8883 2.7126 35 1 4.9276 -7.5233 2.0501 36 1 4.2031 -6.9004 -0.2085 37 1 4.5576 -5.2101 0.3535 38 1 0.6559 -2.0702 1.3271 39 1 2.2763 -1.9409 2.0771 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970932381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:34 Heat of formation + Delta-G solvation = 11.314850 kcal Electronic energy + Delta-G solvation = -19161.431243 eV Core-core repulsion = 16298.474493 eV Total energy + Delta-G solvation = -2862.956750 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36303 -38.20437 -36.58108 -34.79163 -31.65738 -29.77599 -28.30686 -26.28705 -26.01329 -25.67616 -23.47611 -22.34751 -20.60302 -19.30692 -18.21213 -17.12460 -16.86552 -15.91432 -15.56068 -15.30842 -14.49309 -14.17920 -13.70507 -13.34814 -13.24066 -12.66669 -12.54411 -12.46964 -12.31982 -12.00210 -11.90265 -11.47800 -11.00865 -10.93126 -10.80316 -10.52251 -10.49907 -10.47017 -10.44974 -10.25405 -9.89949 -9.83212 -9.49698 -8.61234 -8.28434 -6.81571 -5.77831 -3.25827 2.82738 3.23365 3.35828 3.43263 3.45201 4.44328 4.47203 4.55165 4.58517 4.76763 5.01919 5.04802 5.26305 5.35609 5.49672 5.50572 5.53870 5.64351 5.68314 5.80432 5.81787 5.89923 6.00019 6.01985 6.04475 6.29963 6.31076 6.39205 6.55963 6.64567 6.76572 6.87478 7.30437 7.68364 7.76710 7.85574 8.33304 8.44134 9.16914 9.79431 10.28430 11.26523 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041900 B = 0.004690 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.094605 B = 5968.331882 C = 6006.957283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.106 3.894 15 N -0.612 5.612 16 C 0.541 3.459 17 O -0.545 6.545 18 C -0.136 4.136 19 C -0.123 4.123 20 C -0.140 4.140 21 C -0.124 4.124 22 C 0.087 3.913 23 H 0.033 0.967 24 H 0.042 0.958 25 H 0.003 0.997 26 H 0.253 0.747 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.238 -16.137 -4.757 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.018 4.018 15 N -0.345 5.345 16 C 0.329 3.671 17 O -0.422 6.422 18 C -0.157 4.157 19 C -0.160 4.160 20 C -0.178 4.178 21 C -0.162 4.162 22 C -0.038 4.038 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.090 -15.933 -3.998 16.928 hybrid contribution 0.166 0.947 -0.220 0.986 sum 4.256 -14.986 -4.218 16.140 Atomic orbital electron populations 1.20811 0.82492 0.95599 0.99693 1.43868 1.01870 0.99892 1.84846 1.19257 0.98816 0.85198 1.35865 0.91168 1.25060 0.97942 0.98687 0.97648 1.70080 1.20133 1.27357 1.37113 0.86169 0.78539 0.84129 0.77585 1.20233 1.21551 1.21657 1.21500 0.96337 0.85726 0.90165 0.90408 1.23217 1.02822 0.92883 1.00514 1.22015 1.00677 0.98940 0.80165 1.48503 1.69094 1.09729 1.07220 1.19685 0.76677 0.84557 0.86177 1.90678 1.52242 1.84831 1.14491 1.22378 0.99277 0.93651 1.00384 1.22748 0.97041 0.96763 0.99488 1.22905 0.96714 1.01194 0.96961 1.22844 0.93747 1.01815 0.97816 1.23134 1.00965 0.79356 1.00316 0.94864 0.93952 0.97904 0.93645 0.90616 0.90536 0.91871 0.92216 0.88646 0.90075 0.89737 0.89716 0.91430 0.89299 0.91054 0.91450 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.60 59.85 0.45 4.25 16 2 N -0.58 -14.21 2.96 -170.90 -0.51 -14.72 16 3 C -0.26 -7.03 9.60 -15.06 -0.14 -7.18 16 4 H 0.07 1.84 7.86 -52.49 -0.41 1.42 16 5 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 6 N -0.90 -26.07 10.78 55.49 0.60 -25.47 16 7 Si 0.91 21.53 29.58 -169.99 -5.03 16.50 16 8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 C 0.17 3.45 3.55 -65.66 -0.23 3.21 16 12 H 0.08 1.57 7.95 -51.93 -0.41 1.15 16 13 C -0.15 -2.41 6.48 -24.90 -0.16 -2.58 16 14 C 0.11 1.40 6.45 -3.06 -0.02 1.38 16 15 N -0.61 -10.09 3.32 -170.38 -0.57 -10.65 16 16 C 0.54 8.94 7.12 -10.99 -0.08 8.86 16 17 O -0.54 -11.08 16.02 5.55 0.09 -10.99 16 18 C -0.14 -1.61 3.55 -90.96 -0.32 -1.93 16 19 C -0.12 -1.34 7.45 -25.92 -0.19 -1.54 16 20 C -0.14 -1.50 7.75 -25.80 -0.20 -1.70 16 21 C -0.12 -1.24 7.67 -25.79 -0.20 -1.44 16 22 C 0.09 1.71 6.47 -2.41 -0.02 1.69 16 23 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 24 H 0.04 1.08 7.39 -51.93 -0.38 0.70 16 25 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.25 6.38 -51.93 -0.33 0.92 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.08 1.05 7.43 -51.93 -0.39 0.67 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.07 1.42 7.06 -51.93 -0.37 1.06 16 39 H 0.07 1.56 8.03 -51.93 -0.42 1.15 16 LS Contribution 309.96 15.07 4.67 4.67 Total: -1.00 -30.78 309.96 -8.29 -39.07 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.35 Total: -1.51 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.20 Total: 3.10 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.47 Total: -50.84 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.78 -8.29 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970932381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.385 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds