Wall clock time and date at job start Sun Mar 29 2020 23:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00343 * 2 1 4 4 H 1.08001 * 120.00282 * 203.27451 * 3 2 1 5 5 C 1.38817 * 119.99662 * 23.26549 * 3 2 1 6 6 N 1.31619 * 119.99756 * 14.03556 * 5 3 2 7 7 Si 1.86804 * 120.00035 * 194.03171 * 5 3 2 8 8 H 1.48501 * 109.46876 * 90.00100 * 7 5 3 9 9 H 1.48495 * 109.46829 * 210.00249 * 7 5 3 10 10 H 1.48500 * 109.46733 * 330.00388 * 7 5 3 11 11 C 1.46503 * 120.00293 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.78429 * 183.24206 * 11 2 1 13 13 C 1.55163 * 110.71928 * 306.48024 * 11 2 1 14 14 C 1.54902 * 101.58180 * 153.86313 * 13 11 2 15 15 N 1.47423 * 104.83591 * 322.98994 * 14 13 11 16 16 C 1.34776 * 125.65377 * 204.16682 * 15 14 13 17 17 O 1.21276 * 120.00297 * 179.97438 * 16 15 14 18 18 C 1.50708 * 119.99624 * 359.95570 * 16 15 14 19 19 C 1.53775 * 113.61466 * 277.49884 * 18 16 15 20 20 C 1.53780 * 87.08158 * 220.02336 * 19 18 16 21 21 C 1.53779 * 113.61080 * 179.97438 * 18 16 15 22 22 C 1.47022 * 108.70254 * 24.12688 * 15 14 13 23 23 H 1.09003 * 109.46784 * 275.17122 * 1 2 3 24 24 H 1.08992 * 109.46873 * 35.17268 * 1 2 3 25 25 H 1.08998 * 109.47040 * 155.17762 * 1 2 3 26 26 H 0.97001 * 119.99647 * 179.97438 * 6 5 3 27 27 H 1.08996 * 111.00489 * 35.78534 * 13 11 2 28 28 H 1.09003 * 111.00333 * 271.93906 * 13 11 2 29 29 H 1.08999 * 110.36806 * 204.15097 * 14 13 11 30 30 H 1.08999 * 110.46048 * 81.87535 * 14 13 11 31 31 H 1.09001 * 112.84628 * 48.80643 * 18 16 15 32 32 H 1.09005 * 113.61373 * 334.56502 * 19 18 16 33 33 H 1.09000 * 113.61757 * 105.46877 * 19 18 16 34 34 H 1.09007 * 113.60981 * 270.88022 * 20 19 18 35 35 H 1.09002 * 113.69421 * 139.99290 * 20 19 18 36 36 H 1.08999 * 113.61790 * 254.52790 * 21 18 16 37 37 H 1.08999 * 113.61707 * 25.34861 * 21 18 16 38 38 H 1.08997 * 109.88661 * 118.35808 * 22 15 14 39 39 H 1.08994 * 109.88533 * 239.52963 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1638 1.2239 -0.3696 5 6 1.5403 2.3392 0.4749 6 7 0.4272 2.2559 1.1723 7 14 2.3001 4.0093 0.1241 8 1 1.7547 4.5435 -1.1497 9 1 1.9754 4.9432 1.2320 10 1 3.7741 3.8686 0.0111 11 6 2.1976 -1.2687 0.0006 12 1 3.2721 -1.0949 0.0581 13 6 1.7249 -2.1750 1.1679 14 6 2.0499 -3.5860 0.6174 15 7 1.7502 -3.5072 -0.8238 16 6 1.4394 -4.5495 -1.6197 17 8 1.2100 -4.3667 -2.7965 18 6 1.3773 -5.9423 -1.0474 19 6 2.7505 -6.6260 -0.9401 20 6 2.0560 -7.9175 -1.4033 21 6 1.0096 -7.0179 -2.0830 22 6 1.8455 -2.1031 -1.2491 23 1 -0.3633 0.0926 1.0235 24 1 -0.3633 0.8400 -0.5919 25 1 -0.3633 -0.9327 -0.4314 26 1 0.0016 3.0617 1.5045 27 1 0.6551 -2.0608 1.3427 28 1 2.2916 -1.9698 2.0761 29 1 1.4185 -4.3346 1.0958 30 1 3.1024 -3.8227 0.7736 31 1 0.7876 -5.9979 -0.1323 32 1 3.4842 -6.2458 -1.6510 33 1 3.1341 -6.6777 0.0788 34 1 1.6529 -8.5141 -0.5849 35 1 2.6478 -8.5058 -2.1045 36 1 -0.0118 -7.3861 -1.9865 37 1 1.2658 -6.7443 -3.1066 38 1 2.6288 -1.9953 -1.9994 39 1 0.8902 -1.7737 -1.6576 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970932382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:38 Heat of formation + Delta-G solvation = 10.173234 kcal Electronic energy + Delta-G solvation = -19083.540912 eV Core-core repulsion = 16220.534658 eV Total energy + Delta-G solvation = -2863.006254 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.25175 -38.24336 -36.76370 -34.76811 -31.62966 -29.76736 -28.38733 -26.41885 -25.99876 -25.71885 -23.36512 -22.29949 -20.23017 -19.21619 -18.76819 -17.15869 -16.99978 -15.94302 -15.57959 -15.29338 -14.59535 -14.10949 -13.57469 -13.33761 -13.13991 -12.74514 -12.60368 -12.44510 -12.28056 -12.02255 -11.71446 -11.35398 -11.23077 -10.96086 -10.80744 -10.67161 -10.58378 -10.52011 -10.48283 -10.23821 -9.88571 -9.87264 -9.44365 -8.58980 -8.28683 -6.81921 -5.77282 -3.24806 2.84223 3.27628 3.37092 3.43955 3.44632 4.40944 4.45853 4.49251 4.58182 4.68895 4.95590 5.06052 5.25474 5.37342 5.43002 5.51699 5.57650 5.60349 5.65009 5.71087 5.78850 5.83433 5.91570 5.98114 6.02512 6.28308 6.33374 6.40924 6.58416 6.67776 6.78566 6.87814 7.33008 7.68150 7.77080 7.85309 8.33965 8.44026 9.17780 9.80407 10.29522 11.27361 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.052148 B = 0.004472 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.800928 B = 6260.345940 C = 6331.443409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.102 3.898 15 N -0.610 5.610 16 C 0.531 3.469 17 O -0.549 6.549 18 C -0.134 4.134 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.119 4.119 22 C 0.085 3.915 23 H 0.034 0.966 24 H 0.040 0.960 25 H 0.001 0.999 26 H 0.253 0.747 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 -17.089 -0.124 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.307 5.307 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.191 4.191 14 C -0.022 4.022 15 N -0.344 5.344 16 C 0.320 3.680 17 O -0.428 6.428 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.179 4.179 21 C -0.156 4.156 22 C -0.039 4.039 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.721 -16.853 -0.721 17.087 hybrid contribution 0.244 1.046 0.031 1.075 sum 2.965 -15.807 -0.690 16.097 Atomic orbital electron populations 1.20781 0.82507 0.95590 0.99574 1.43865 1.01836 0.99925 1.85025 1.19231 0.98714 0.85368 1.35816 0.91229 1.25023 0.97947 0.98584 0.97759 1.70073 1.20215 1.27368 1.37169 0.86233 0.78749 0.83949 0.77463 1.21424 1.21734 1.20409 1.21306 0.96387 0.86018 0.90040 0.90340 1.23364 1.02756 0.92883 1.00117 1.22335 1.00001 0.99213 0.80604 1.48546 1.68007 1.07726 1.10104 1.20141 0.76473 0.85556 0.85850 1.90665 1.50404 1.85344 1.16344 1.22746 1.00189 0.91539 1.01076 1.22789 0.95041 0.95876 1.02218 1.22836 0.98315 0.96206 1.00555 1.22812 0.99337 0.94307 0.99174 1.22799 1.01959 0.79475 0.99689 0.94802 0.94091 0.98020 0.93670 0.90600 0.90348 0.91468 0.91682 0.87252 0.89774 0.90758 0.90003 0.91119 0.91187 0.88763 0.92303 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.46 59.85 0.45 4.35 16 2 N -0.59 -14.37 2.93 -171.38 -0.50 -14.87 16 3 C -0.26 -7.06 9.59 -15.06 -0.14 -7.20 16 4 H 0.07 1.83 7.87 -52.49 -0.41 1.42 16 5 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 6 N -0.90 -25.94 10.78 55.49 0.60 -25.34 16 7 Si 0.91 21.61 29.58 -169.99 -5.03 16.58 16 8 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.17 3.43 3.43 -66.09 -0.23 3.20 16 12 H 0.08 1.53 7.95 -51.93 -0.41 1.12 16 13 C -0.15 -2.51 6.62 -24.58 -0.16 -2.67 16 14 C 0.10 1.36 6.69 -2.53 -0.02 1.35 16 15 N -0.61 -9.93 3.33 -170.53 -0.57 -10.50 16 16 C 0.53 8.66 7.37 -10.98 -0.08 8.58 16 17 O -0.55 -11.05 16.22 5.56 0.09 -10.96 16 18 C -0.13 -1.57 3.31 -90.96 -0.30 -1.87 16 19 C -0.12 -1.16 7.63 -25.92 -0.20 -1.36 16 20 C -0.14 -1.18 8.08 -25.90 -0.21 -1.39 16 21 C -0.12 -1.27 7.41 -25.90 -0.19 -1.46 16 22 C 0.09 1.62 6.39 -3.06 -0.02 1.60 16 23 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 24 H 0.04 1.08 7.39 -51.93 -0.38 0.70 16 25 H 0.00 0.03 6.59 -51.93 -0.34 -0.31 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.08 1.37 7.07 -51.93 -0.37 1.01 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 0.75 7.24 -51.93 -0.38 0.38 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 1.11 7.47 -51.93 -0.39 0.72 16 32 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.18 7.43 -51.93 -0.39 0.80 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 1.50 6.47 -51.93 -0.34 1.17 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -30.91 309.44 -8.24 -39.15 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.30 Total: -1.92 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.19 Total: 3.19 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.47 Total: -50.71 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.91 -8.24 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970932382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.320 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds