Wall clock time and date at job start Sun Mar 29 2020 23:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36934 * 119.99628 * 2 1 4 4 H 1.08003 * 120.00099 * 160.57172 * 3 2 1 5 5 C 1.38813 * 120.00468 * 340.29277 * 3 2 1 6 6 N 1.31620 * 119.99633 * 347.10268 * 5 3 2 7 7 Si 1.86793 * 120.00207 * 167.09693 * 5 3 2 8 8 H 1.48503 * 109.47298 * 60.00767 * 7 5 3 9 9 H 1.48502 * 109.47270 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47389 * 300.00572 * 7 5 3 11 11 C 1.46496 * 120.00086 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64062 * 179.29816 * 11 2 1 13 13 C 1.55157 * 110.72000 * 56.15860 * 11 2 1 14 14 C 1.54914 * 101.57985 * 206.13473 * 13 11 2 15 15 N 1.47424 * 104.83306 * 37.00775 * 14 13 11 16 16 C 1.34777 * 125.64783 * 155.90931 * 15 14 13 17 17 O 1.21278 * 119.99657 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.00037 * 359.97053 * 16 15 14 19 19 C 1.52999 * 109.47057 * 180.02562 * 18 16 15 20 20 C 1.53002 * 117.49986 * 243.74896 * 19 18 16 21 21 C 1.53000 * 117.49870 * 175.09044 * 19 18 16 22 22 C 1.47322 * 108.73332 * 335.71517 * 15 14 13 23 23 H 1.08998 * 109.47335 * 84.81779 * 1 2 3 24 24 H 1.09005 * 109.47268 * 204.81650 * 1 2 3 25 25 H 1.09003 * 109.47666 * 324.81693 * 1 2 3 26 26 H 0.97002 * 119.99778 * 179.97438 * 6 5 3 27 27 H 1.09000 * 111.00453 * 324.20283 * 13 11 2 28 28 H 1.08999 * 111.00402 * 88.06396 * 13 11 2 29 29 H 1.08994 * 110.36751 * 155.84812 * 14 13 11 30 30 H 1.09007 * 110.36345 * 278.06027 * 14 13 11 31 31 H 1.09000 * 109.47544 * 300.00581 * 18 16 15 32 32 H 1.09004 * 109.46883 * 60.00202 * 18 16 15 33 33 H 1.08995 * 115.54961 * 29.41648 * 19 18 16 34 34 H 1.09005 * 117.49361 * 359.97438 * 20 19 18 35 35 H 1.08997 * 117.50459 * 145.01758 * 20 19 18 36 36 H 1.08996 * 117.49724 * 214.97819 * 21 19 18 37 37 H 1.08998 * 117.50125 * 359.97438 * 21 19 18 38 38 H 1.09000 * 110.06529 * 241.86833 * 22 15 14 39 39 H 1.09004 * 109.84793 * 120.61634 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1835 1.2126 0.3111 5 6 1.5165 2.3529 -0.4054 6 7 0.3566 2.2914 -1.0244 7 14 2.3106 4.0105 -0.0722 8 1 3.6342 4.0690 -0.7429 9 1 1.4398 5.0916 -0.5996 10 1 2.4889 4.1888 1.3913 11 6 2.1975 -1.2687 -0.0006 12 1 3.2729 -1.0914 -0.0130 13 6 1.7720 -2.1476 -1.2063 14 6 2.0756 -3.5711 -0.6759 15 7 1.7186 -3.5253 0.7538 16 6 1.3782 -4.5857 1.5128 17 8 1.1028 -4.4299 2.6836 18 6 1.3397 -5.9648 0.9067 19 6 0.9266 -6.9798 1.9744 20 6 1.9459 -8.0536 2.3604 21 6 0.7167 -8.4283 1.5286 22 6 1.8000 -2.1292 1.2172 23 1 -0.3634 0.0928 -1.0234 24 1 -0.3634 -0.9328 0.4313 25 1 -0.3634 0.8399 0.5921 26 1 -0.0860 3.1068 -1.3074 27 1 0.7100 -2.0290 -1.4209 28 1 2.3745 -1.9219 -2.0862 29 1 1.4640 -4.3082 -1.1961 30 1 3.1337 -3.8035 -0.7972 31 1 0.6179 -5.9829 0.0901 32 1 2.3276 -6.2212 0.5240 33 1 0.2773 -6.5963 2.7613 34 1 2.9107 -8.0371 1.8532 35 1 1.9669 -8.3768 3.4011 36 1 -0.0705 -8.9978 2.0225 37 1 0.8725 -8.6581 0.4746 38 1 2.5550 -2.0378 1.9980 39 1 0.8301 -1.8083 1.5972 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970938974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:41 Heat of formation + Delta-G solvation = 15.525666 kcal Electronic energy + Delta-G solvation = -18778.123822 eV Core-core repulsion = 15915.349666 eV Total energy + Delta-G solvation = -2862.774155 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.84361 -37.86700 -36.76304 -34.78518 -31.74263 -30.04780 -29.43887 -27.48306 -26.05322 -23.61432 -22.53051 -22.29963 -20.88827 -19.24936 -18.93504 -17.06003 -16.92365 -16.16061 -15.59081 -15.01164 -14.65155 -14.25501 -13.89914 -13.38507 -13.25656 -13.01783 -12.50278 -12.29421 -12.21359 -11.72884 -11.66154 -11.55460 -11.35900 -10.95432 -10.78228 -10.60185 -10.48451 -10.44884 -10.27485 -10.13466 -9.90326 -9.85803 -9.55119 -8.57968 -8.30753 -6.86163 -5.76453 -3.21197 2.86313 3.20236 3.37562 3.43341 3.44549 3.69055 4.45940 4.52860 4.60725 4.78259 4.97318 5.03692 5.23902 5.28912 5.34836 5.42254 5.46931 5.55618 5.57386 5.60196 5.71969 5.81578 5.90210 5.94787 6.00710 6.20442 6.31670 6.39623 6.56254 6.65692 6.80010 6.86505 7.38641 7.68347 7.78281 7.82881 8.32706 8.41864 9.18497 9.81171 10.28523 11.28475 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.054858 B = 0.004113 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.283217 B = 6805.962535 C = 6885.981608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.588 5.588 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.099 3.901 15 N -0.614 5.614 16 C 0.525 3.475 17 O -0.547 6.547 18 C -0.105 4.105 19 C -0.138 4.138 20 C -0.179 4.179 21 C -0.182 4.182 22 C 0.087 3.913 23 H 0.031 0.969 24 H 0.000 1.000 25 H 0.046 0.954 26 H 0.253 0.747 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 -17.243 0.055 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.308 5.308 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.191 4.191 14 C -0.024 4.024 15 N -0.349 5.349 16 C 0.313 3.687 17 O -0.425 6.425 18 C -0.145 4.145 19 C -0.157 4.157 20 C -0.216 4.216 21 C -0.219 4.219 22 C -0.038 4.038 23 H 0.049 0.951 24 H 0.018 0.982 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.169 -17.019 0.660 17.169 hybrid contribution 0.371 0.933 -0.009 1.004 sum 2.541 -16.086 0.651 16.298 Atomic orbital electron populations 1.20802 0.82265 0.95638 0.99508 1.43893 1.01984 0.99889 1.85077 1.19218 0.96528 0.84815 1.38384 0.91126 1.24966 0.97549 0.98423 0.98598 1.70085 1.17005 1.26897 1.41241 0.86288 0.78370 0.83495 0.78090 1.20921 1.21624 1.21024 1.21290 0.96333 0.85995 0.90192 0.90374 1.23373 1.02851 0.92725 1.00184 1.22355 0.99679 0.99396 0.80959 1.48623 1.67184 1.07853 1.11205 1.20185 0.76828 0.85550 0.86094 1.90672 1.49567 1.85752 1.16500 1.21186 1.03329 0.91490 0.98504 1.22072 1.03490 0.89056 1.01037 1.23032 0.94150 1.03703 1.00721 1.23002 1.00511 0.97961 1.00430 1.22826 1.02176 0.79511 0.99253 0.95119 0.98200 0.93500 0.93635 0.90583 0.90360 0.91370 0.91670 0.88696 0.89085 0.86419 0.88909 0.88839 0.88776 0.88820 0.92180 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 7.54 59.84 0.45 4.42 16 2 N -0.59 -14.35 2.94 -171.39 -0.50 -14.85 16 3 C -0.26 -6.99 9.65 -15.06 -0.15 -7.13 16 4 H 0.07 1.84 7.82 -52.48 -0.41 1.43 16 5 C 0.00 0.08 5.11 -17.43 -0.09 -0.01 16 6 N -0.91 -26.00 10.51 55.49 0.58 -25.41 16 7 Si 0.91 21.58 29.57 -169.99 -5.03 16.56 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 C 0.17 3.38 3.43 -66.10 -0.23 3.15 16 12 H 0.08 1.51 7.91 -51.93 -0.41 1.09 16 13 C -0.15 -2.47 6.64 -24.58 -0.16 -2.63 16 14 C 0.10 1.29 6.69 -2.53 -0.02 1.28 16 15 N -0.61 -9.81 3.33 -170.28 -0.57 -10.38 16 16 C 0.52 8.37 7.85 -10.99 -0.09 8.28 16 17 O -0.55 -10.82 15.89 5.56 0.09 -10.73 16 18 C -0.11 -1.19 4.99 -27.89 -0.14 -1.32 16 19 C -0.14 -1.55 5.41 -90.62 -0.49 -2.04 16 20 C -0.18 -1.70 10.18 -26.69 -0.27 -1.97 16 21 C -0.18 -1.58 10.25 -26.69 -0.27 -1.85 16 22 C 0.09 1.63 6.41 -2.90 -0.02 1.61 16 23 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 24 H 0.00 -0.01 6.45 -51.93 -0.34 -0.34 16 25 H 0.05 1.25 7.11 -51.93 -0.37 0.88 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.08 1.36 7.19 -51.93 -0.37 0.99 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 32 H 0.09 0.86 7.88 -51.93 -0.41 0.45 16 33 H 0.12 1.57 7.31 -51.93 -0.38 1.19 16 34 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.52 6.30 -51.93 -0.33 1.19 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -30.84 313.64 -8.45 -39.29 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.28 Total: -0.98 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.47 Total: 1.78 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.49 Total: -50.64 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.84 -8.45 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970938974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.819 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds